XLOC_030967


Basic Information

Item Value
gene id XLOC_030967
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 20289359 ~ 20297439 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061976
CTTCTGTAATGTAAAGCTTTATTACATAGTTCTGCCTCATGGAAAAACCTTCCCATCTTACAAAAAGTCTTTCCCATGTATACAAAAAATGCAttgttatttaagttttatttttttacaagcaTACATCTGAACTTAGTGTAATATATTTGTCTGGTTTAAAATGATAACGCAACACATTAAATGTTATAAACAGTAAAAGCATTTACACTTTCTGTGTCCAGAGATGTTAGCAGAGCACATCCAAGCACTATTTGTTTGCGGATACCTTCACATATACCCAAAGTAAAGACATTCATATATTTtcaaatgactttttaaatattttgcatcaCTAAATGTCTGTATAGTAGTTATgaaatccaaaataaaaacacGCGTCTCTGCTCTCCAGTCATAAATAAGAAACAAATCCACTATCATAACTTTCCTTTCTGCACAAAAGCTGCATTTCATCCCTGAATGAAGTGTGCCGAGCGATCATGTGCACTTATTCTGGGAAGACTTGATAGATTAATCACCCTGTCTTTCCTCAAAGCCTGCAGTAAAACCActgacgtcacacacacacacacactcacggagATCCAGTCAGAAGTTGCATAAGCACAACCAGGCCAAAATACACAGCACAGATGGCACACTATCATGACATAATAACATACTAGAGTCAAAAAAAAGCAACAGATGCAAGCACTTCACCTGTAAAAAGACAAGAAAACCGTCCAAGCCgaatgaaaaaaaagtttattctcataataaacacatacagtacatcatCTCAACAAAATGTACAAAGTGCAATATGCGTTGAAACTACAGCAAATCTGCAGTACACAAAAACAATTACTGCATACTTAATAGCGACGACAACGGTGACAAGATGTTTTTGCAATTAAACCGCATTGCTAATTCGCAAAAAGACCCTCGATATCCACCTACAGGAAAGTCTAAGGATGTTTTGGGAGCAGGAAAACCAGTGTCacattctgaaataaaaaaacaaaagccactTCTCACCAGTCTCCAGTTCTCCCAAGCAAACAGCTTACATCTATGGCAGCTCCACAAGCAACAGCATCAACAGGTAATGTggcctttatttattaattattgatttaatGCTAAGCTTTGGTTATCACTTCATACAGTGTATTGCTGAGTGTAGAGGTGGAGATGGTCTGTATATGATGAGCCTGCTCATGTTTTTTACATAAAAGCAAACACTCTGACAGGGTCTCCTGTTCATAAATAGTTCACAGTTATGGTGTAACCGCTGTACAAGGCACCACTCACTCGCAAACTTCACATTCGTGTTGCTCCAACTCAGCGTGAGAGCATATATGCGTGTATAAAATGGCGTTTATAAAACATTGGTAAAGTATGCTGCATAATATTAAACGTCAAGTACTTCAACTCAAGCTGTAATTGGCCAGCTGATGGTAAATAAAGGCATGTTGACACCAGAACATGATCAAAGATATAACAGTTGGACTGATGCATTAACAAAGCTTTTTGCTTCTTATCAAAGGTTCTGTGATCATGTCATCTGGTCAAGTTTCCACGGACACACACAGAGATGAATCTCACTGTCAAAAACATGTCTAGGAGGTTTTTTCACTCTTAAATATCACATAAAATGTATCAaatcaaatattatattttgCCTAAATGCTTCAAATTGATCCAATGTTTTTAATTCCTACttcttaatgaaaaataaaaaaaaaaaatcacaaaaaaataataattttatgaatTTATGATCATTTCCGGTTACTaccgtacactgtaaaaaaatggctgtgatttcaatggtaaagaactgtaaaaatgctactgtcaaaatctgtaacctggtcaacagtatgtttccttaatatatacggcaaataaccgtaaattgactttcctaGAATTCCCTgtatggcacataactttttatgcattttgttgacattactatggatctttttagttgtttccccatcagttatgtacaatagaggtttatattacatttaatgttgataaacaatgtttattgcatgacttttaattttatgtgtgttaccatactggtgtttagtagctgtgtgaatgactcTAAGCACCttctatatattaatttaattttctgCTTGTGgtaaaagttgattgtgatgtggtttggttcattatgtaacttccttaTAACCACCTGCATATGGGTGTGCTTATGTGTCTAATTGTGTAACAAAAGATAtgtagatgttggtcattcaaaatacagacatattacctctataaatgaATGAACTACGGTAGTTTACCGTGAAAATGAGAAATTATTTTTTACGGTTTGACCGTGTTTTTAACCTTAAAGTACtgtcaaccacagctgccgtttttttaaccgtaaattttacggatttattttttacagtgtatattacaACGAGAAaatatacaaatgcacacacatcactttaaatgggtgCGCAGCCAAACAGCAAACAGTGCAAATATATGTATtcaaaaaggcggcaacaccaaagctccaaaaataccaatttattcaattaaaaagacTGATACAAGGCGTGTAACATTTCAAGCACACCGCCTCTCACTAGCTacgttttcatccacctatttttatgtgcattttggagatGCGCATTAAAAAACGGTTGATTGAAACACTGAGATGCGCATACATTTGGAAAAAGCGCATAAGAACATATGTGCAacactgagtaggataaactttttatccgatAAGAAATGATGAGAAAAAactgtgatggaaacacttttaccgaacaaattccagtatacgCATTAAAAAAAGCCATGTGATTTTGTTACAAGAGATCAAGTGACGATAAATATGTGTGtgatggacaaaccagcaggctgagcgcattgtaaaacatctgaaatgttgttttagtcatcgCAAAACGCCTTACTGTTTAAGTGTTAgcgttattatattattagtaacCTCCAGAACTGTCTGTACTTCGTGTCTcgtgccttcaaacgccaccacatgTTCAGTGCAtgtcggcattgtcttctgaggtgaaagtaatttattaaataaggaaaagattcacacagtttctcctaccgcagcaaattcagtttttcctGTCGATATTtgccgccagttaatcaggaattacgtttaatgtgatatttaatgtgataatccagttttgtgcataaagtttattcgcatttttagatgaaaacatagctactgtccAATGAAGAGCTGGTGTGCTCAAAATGTTACACGTTCTGTATCAGccttttaattgaataaattggcatttttggagctttggtgttgccgccatTATGATGAATATATACTGttattatattacaaaacaatatattatttatttaataaaatcttgCATGCGCCAATCTAAACCTcccttttttactgtatttttcagtACATTGCACTGAATTTATAAGATTTATAAGAGTAAGGGCGTGTGTCCACCAAAGCATTTTTTCAGCTGCAGGAATGTAAACGCTGTTCTGAAAATGCTGAGCTGCAAGCACTTCTCGAAAGCTGTCGAAGCTTTTAAACAATGCAAACTCCATGCCTCGCTACGCTGccatcacttaaaaaaaaaactttcaataacttctaatgaaaacaacagaaaaagaaCAGCACATACGTTTCTGTGCACTTTGGTGAACAGGAGCCctcatgggaaaaaaaaaacaatattccaGTAAAACTCTGttggcaccaatagcctagtgcagtggttctcaaactctgTTCTGGCGGTCCGATGTCCTAAAGAtttttcctcaacacacctgcaaggatgtttctataaatcctagtaagagcttgattagctagcccaggcgTGTCTAACTgtggttggagctgaaatctgcaggacaccagacctccaggaccaaaaaaaatcagttcctaaatacaaaacattatttatcataTTTCATAAAACTTCCTTGTGGTTTTTGGGAAAATGTGACCTAGACATGCTCTTGTGAGATTCACTCATGCAGATACACACACTCATAGTGCAAACCATGCCACAACTTTACCTTGTAAGTGTTGTTCAATCTTTTGATGTAGATTTAATCCAAAAGGCCATTCCACCttgctttaatttctttatgAAAAACTTAATGCAAATGCAATAATGTGATGGAAATCATCAGCGAACTGCAATCAGCCTCAGCTCAGTTTGGCCCAAACAAGCCACTGCATCAGAATCAAGTGTAATGAGTCTTAAAAATAACAGTCGCGTTTTACCTTGGTGAATGACTGATTTGTATCGCATTTGGAGACACAGTACAGCTCTTTTGCTAGAGAAAAAATCCAATGTTAGAGCTCCTGTCGATATAAAATCTCTTGAAAACACACATATGTGCTACTAGAGACTGTAACAGTAACAATGACCCAAGCATTTCCCACTCTTTCACTATTCGAACAGCAACATGGACAGTTACATTCGTAAGAACAGCAACTGCATTTATGAGCATTTCATTGGAAACGGAGCAGCTTGAAGTTGCCTTCGCTTTTCTTTATTCTTCAAAATGATTGTCTTTCATCACCGTCACTAAGTACTAGAAAGATGGAAGAATCCCAAACAAATCTCCTCTTGGTGGTCCGGCACCAGCTTTCCCAATGAGCCTCCACACACCAAAGTGCTGCCAGTCTTCCTGTTTTGATTTCTGCCTGGCCTAACAAACAGTAATGAACTGATATGAGGTATCTGTTTGAAACCTGTGAGTGAATCATCAGTGCTCAATGAATGATAAGAGTCCATCAGCACACAAAGAACTTTCCTAATCGTGATAAAGAGTCCATTTCCTTTCGCCGTCCAGCCAGGAAGTGAGAGCGCAGGAGGgtgaatgattttaaaatgtgTGACCATGTCCAAAGGAATCTGTGACTCATAGCAGGCCACAACTAAGCGATTTATGCTGCGATAAATGGGTGGACTGATGGAAACATTACACAATGGTCTATTTTGATGTGTTCAAGTAATGGTCTCTGGGATGGCGAGTGTTTGAGAACAGCAGTGAGGAAGAGCAGGGAAAACCTCATGAACCGTTCATCAGTCAGTGCAATACACATCCATTTGGGTTTCATGCATTGAAAGTCTGTCCGATAGATTTTGGAAACCTATTCATTGAATgcacaaaaacagaaaacactCTTAATCCAACTTGCAAGATCTGTTCACCACAACACCAAAGTTCCCAAGTGGCTGAAATGATTAAAAAgtatctataaatataaatatctcaGTAACGTGTTGCAGAACTCCAGATGAAGCTGAAAATAAAAGTAGTGTTGCGTTAAAATCTCCTGCTGTCAGCTCTTGGACTCTTCACATCCTGCTTCGCCTTGGCTGAAGACCTCCATGTTGTCTGGTTTTGCCCATTCTGGGCTGAGCGAGTGCTCGGGTTCTGGGGACAATGAGAGCATGAGAAGGGTCCCTGCGTCAGAGGAGCAGGCCGAGCACAAGTCCTCAGATGAAAAGGTGAGACTGCCTAGTTTGGCGAGAGAGTTAGAGCGCTTGAGTCGTGAAGGAACAGTCAGTCCCGCTAATCGCATTCGTGCTTCAATTTCTTGTGTACGCTGACGCACAAGGCCTGGTTTGCCTCGGACACTGCGAAGACTGTCACTGCTGGAGCTGCGGGTGAGCGTAGAGCCGTGTGGAGATGAGACTGGAGTCAATCCTCCTGATCCGAGGACTGCCAACAAAGCCTCATTGGTCAGTGGCACTGCCGATTCAGTTCCAAAATCATTCCGTGTTCCAAAAGACCTGTGAAAGGGGTCAGCTGGATCACTGGAACTGTTCATTGCATCTTCTGTTTTACTAGAACCAGCTTCCCGTTGTTCATTTGCGCGTGCACGCTCCTGGAAGAGACCGGAGAGTTTTTCCAATCGTTCTTTTCGACGTCGAACTAAACCGGAGCGTTGGAGCTGAATCAGAGCCTCTTGTTGTTGAGGAGAACAAGACGCCTCTGCCTTCTCTAAACCTTTCAGCTCTCTCTCATTCCGGGGAAGAGCAGAGGAACCCTGTAGATCAGTCTCTTCCTGCCTGAAATCTCCTTCTCCTTTGGCCTCAGGCAGAGTTGTCTGGGTTTCAGTTTCCTGGTCAAGAGATTTGCTTTCTGGCATATCGTTATTCCCTAAGGACATTGCATTGGCATCAAGGCACGGATCTGAGACAGTTCTGCCACACTTGGCTGTCATGGACAAGTTGGCACAGGATAGCATCTGAATGGAGATACAGGGCGCACTGTTGAGGGGTAAAGGGGCAAGGCCTCGTCTGTTAGCCTCCGAAAGAGCACTTTGGATGGGCTTGGAAGCAAGCGATGAACCAGGAGCAAGCCTTGTCTTTACTTGGGCACTTTCCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061976 True 6427 lncRNA 0.39 2 20289359 20297439
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_030966 dao.3 coding downstream 84284 20197138 ~ 20205075 (-)
XLOC_030965 dao.1 coding downstream 94009 20188438 ~ 20195350 (-)
XLOC_030964 dao.2 coding downstream 103694 20170960 ~ 20185665 (-)
XLOC_030963 usp30 coding downstream 153680 20125934 ~ 20135679 (-)
XLOC_030962 pxmp2 coding downstream 166357 20115774 ~ 20123002 (-)
XLOC_030968 AL845326.1 coding upstream 111397 20408836 ~ 20408952 (-)
XLOC_030969 NA coding upstream 119283 20416722 ~ 20420371 (-)
XLOC_030970 ISCU coding upstream 146449 20443888 ~ 20446082 (-)
XLOC_030971 ficd coding upstream 188185 20485624 ~ 20491272 (-)
XLOC_030972 NA coding upstream 302948 20600387 ~ 20614620 (-)
XLOC_030961 NA non-coding downstream 180094 20105008 ~ 20109265 (-)
XLOC_030959 NA non-coding downstream 325803 19960680 ~ 19963556 (-)
XLOC_030952 NA non-coding downstream 952832 19334206 ~ 19336527 (-)
XLOC_030951 NA non-coding downstream 973711 19312775 ~ 19315648 (-)
XLOC_030949 NA non-coding downstream 1280585 19008646 ~ 19008774 (-)
XLOC_030973 NA non-coding upstream 318632 20616071 ~ 20619339 (-)
XLOC_030981 NA non-coding upstream 941894 21239333 ~ 21242084 (-)

Expression

Expression of XLOC_030967 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 0.8.
End of interactive chart.

Expression of XLOC_030967 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 0.75.
End of interactive chart.

Co-expression Network