XLOC_030978 (camk2b1)


Basic Information

Item Value
gene id XLOC_030978
gene name camk2b1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 20931252 ~ 21030996 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060198
CGATTGGAGCACAGCGCGGGGGTGAGGACGCCCGCCGTCAGCATACACGCTACGCTACTCACCATTAACCTGTCATTTCAAGACATATCTGGCTTTTTTTTGAGCTCAACGTCGAGGCGAATATCCCTGACGCTCCAGCTCGCCGAATCAAGGACGTTTTGTTATTCTTAAAGCGTGTCCGAGTCCGAGACGGGAAGACATGGCCACGACTACATGTACGCGCTTCACGGACGAATATCAGCTGTACGAGGAGCTGGGCAAGGGAGCCTTTTCAGTGGTGCGACGATGTGTAAAGTTGAGCACAGGACAAGAATATGCCGCCAAAATCATCAACACCAAAAAACTGTCCGCAAGAGATCATCAGAAGCTGGAACGAGAAGCTCGAATCTGTCGTTTGCTGAAACACCCTAACATCGTCCGTCTGCATGACAGTATATCAGAGGAGGGCTTCCACTACCTACTCTTTGATTTGGTAACTGGAGGGGAACTGTTTGAGGACATCGTGGCCAGAGAGTATTACAGTGAAGCAGACGCCAGTCACTGCATCCAGCAGATCCTGGAGGCGGTGCTTCACTGCCATCAAATGGGTGTGGTGCACCGAGACCTGAAGCCAGAGAATCTGCTCTTGGCCAGTAAATGCAAGAACGCTGCTGTGAAGCTGGCCGACTTTGGACTGGCCATTGAGGTGCAGGGAGACCAGCAGGCATGGTTTGGATTTGCCGGGACACCAGGTTACCTGTCCCCCGAGGTGCTGAGAAAGGAGGCATATGGCAAACCAGTGGACATCTGGGCCTGTGGTGTGATTCTGTACATTCTGCTGGTTGGATATCCACCTTTCTGGGACGAGGATCAGCACAAACTTTACCAACAGATCAAAGCTGGAGCTTACGATTTTCCATCTCCAGAATGGGACACAGTTACTCCTGAAGCCAAAAACCTCATCAATCAAATGCTGACCATCAACCCTGCCAAGAGAATTACTGCACAGGAAGCTCTCAAACACCCATGGGTCTGCcaacGCTCCACTGTGGCCTCCATGATGCACAGACAGGAGACAGTGGAATGCCTGAAGAAGTTTAACGCCAGGAGGAAACTCAAGGGCGCCATCCTCACCACCATGCTTGTGTCACGAAACTTCTCTGTGGGTAGCAGGCAGACCACGGCTCCCGCCTCGGTCACTGCGGCTGCGGCTGCAGTAGCCGCGGCTGCAGGCACCACAGCAGGGCTGGTGGAACAAGCCAAGactttgttgaacaaaaaagcaGACGTAAAGCCCCAGACAAACAGCACCAAAAACAGCATAGTCACCAGTCCCAAGGGAAACCTCCCCTCTCCTGCACTGGAGTCGTCGGACAGCAGTAATGCCACAGTGGAGGATGAGGAAATGAAAGCACGCAAACAGGAGATCATCAAAATCACTGAACAGCTTATTGAGGCCATCAACAATGGCGACTTTGAAGCCTATGCTAAAATCTGCGACCCTGGACTCACCTGCTTTGAACCTGAGGCCTTGGGAAACCTGGTGGAGGGGATGGACTTCCACAGATTTTACTTTGAGAACCTGCTCTCCAAGAACAGTAAGCCCATCCACACCACCATCCTCAACCCTCACGTGCACCTGATTGGAGAAGAGGCCGCCTGCATTGCCTACATCCGCCTCACACAGTATGTGGATGGCCAGGGCCGACCgcgcagcagccaatcagaggagaCGAGGGTGTGGCATCGCCGGGACTCCAAATGGCAGAATGTCCATTTCCACTGTTCGGGAGCTCCTGCTGCCCCTCTGCAGTGAAGGTTGAGCTCATTGTAGCAACATCTATCAAGAGAGCCCAGCCAGAAATGGAGAGTGCAGgagtgaaaaagagagagagagtgagggaggggggaagttggagagagagggaGGAAGGAAAGCGAGCCCAGTGCTGGCCAGTGCCTGACCCTCTCACACTGGGCCCCGCCCCCTCACCTGTCAATCACCTCACCTGCCAATCACTTATGTGCATCGTCTTCTGTCTTACCTTCAACTTGCCCTCCTCCctccttaaaaaaaacaacaacccacCCCTCCCCGTGTCTTTCCACCCGTGCAGAGACTCCCCTTGTCGTGCACATGTGCTGTGTGGAGTTGGACAGTCTTTGATTAAATACGGATAAATAAGGCCTCAGCGAGTCGTCTGTGAAACGCCATGCTTTCCGTCGCACCTTCCCAGTGTCAATAACGTTACACTGAATCACCGTCCTCTCTTACAAgtgttttcaatattattatgattatgattattgatTAATATTGTTCTTACTGTTGTTATATTAGTATTAAATACAAAAGCAATTGTACGTGTCACTTATACCACTCACGTTCTGGATGCCAATGATTTTACATCTATCTAAGACTTTTTGTCGTTTCCAAATGATATTTTGGAAGAGCATGACTTTTTTCAATATTATCCACTGTGGCTGTCCTTTCCTTGGTGGTTTCGGAGAAATAATGGCCGCCGTTTATGTACAGGCTTCTCAATGTGATTCACATCTAACCGACGCGTCCGTCCATGTGTGTTCAGACATAAGTGGATGATGTGTGTTAGCGCGCGCCCGTGTGACTGTTTTGAGGCAGATTTTACCAGAGCCTGGTCAAGAACGACGTGACGTTCGGGGTCTTCCAGCTTTTAGACGTTGTGTTTTTCCACACGTTTGGAATAATTCAGATTTCCTGGCAGTTTGGCGAACAATTCCTGGTTTTTCGGAAAGCCACAGTCGTGCTTTATATGTAACCCGTGACACCGATTGCAACCTTAGTATTAGATGTTGCGTTTTTTTCCTCTCGTTATTTTCAGTCTTCAGCTGAGCCAGTGGTGTTAAGAGAGCACCAGACTTGATTAAACCTGAATAAAAGCCATACCTCCGCAGGCAAATCAGGTGGCCTTCTCATATAAACAAAGATATCTAATGACTTTGTGTTTCTACACTAGTCATAGTAAAGGTCTAAAGCGTTTAGAGGCCAACCAATCGAAGGAATCAACTCAATTTGGCAGCGCTGAAGATTTTGGTGGtgtttagcttattaaatttGCTCTTCATCTCTTCTTTTGACATTTGTACTTTACTCAACATGGTGTTCAGCTGAGCCAGTGGTGTTAAAAGAGCGCCCAGACTTGATTAAACCTGAGTAAAAGCCACACCTAAGGTGACCTCTTCATATAAACAAAGATATCTAATGACTTTGTGTTTCTACACTAGTCATTGTGAAGGTTTAAAGCATTTGTAGGCCAACCAATCGAAGGAATAAACAGAATTTGTCAGTGCTGAAGATTTTGGTGGTGATTAGCTTCAAACATTTGCTCTTCTCCTCTTCTTTTGACATTTATATTCTACTCAACATGGTGTTCAGCTGAGCCAGTGGTGTTAAGAAAGCGCCCAGACTCGATTAAACCTTGATAAAAGCCATACCTCAGCAGGCAAATCAGGTGACCTCCTCATATAAACAAAGATATATAATGACTTTGTGTTTCTACACTAGTCATTGTGAAGGGTTAAAGCCTTTGGAGGCCAACCAATTGAAGGAATCAACTAAATTTGGCAGCACTGAAGATTTTGGTGCTGTGTAGCTTATTAAATTTGCTCTTCTCCTCTTCTTTTGACATTTGTATTTTACTCAACATGGTGTTCAGCTGAGCCAGTGGTGTTAAGAGAGCGCCCAGACTCAATTAAACCTTAATAAAAGCCATACCTCAGCAGGCAATCAGGTGACCTCCTCATATAAAACATTGTGTTTCTACACTAGTTATAGTGAAAGTTTAAAGCGTTTAGAGGCCAACCAATTGAAGAAATCAACTAAATTTGGCAGCGCTGAAGATTTTGTGGGTGTTTAGCTAATTAAATTTGCTCTTCTCCTCTTCTTTTGACATTTGTATTGTACGCAACATAGTGTTGACTATATTACTCATTCTATTTTTgagagtttatatatattttgtttgttgtctgcGTGCAAAACTTTTACGAAGAGTGAACTATTTGTAACCCTGGATCCTTTTTAAACACGTGTTTACCTTTTGGATGGGCAAAGTGCAAGGTGTGTTTGGAAGAATCAAGTGACGAGTCGCAATCGGCAGCAATAGTTTTATATTTCAGATGGCGACAATTTTGAAGTGTGCGTCACACCTTGTGCAACTTTACGCTGGTTTTCCATCTACGTTAGAAGGGTTTGTTTGATCAGAGTGACATCATGTGACTATTTTATTGACTGATTGTGTCCTcaggttgtatttatttatttgatattatcGCAACTTCTTAAGTTTGAACACTCATTAGCGTTGAGCCACGTCATATCAATGATGACTACTGAtcgttgttttttttgttgttgttgttattgaaaCAATCGCCTTTCACATGGATAAAAAGAGGGAATCTTGTGAAGTCAACTCAAAGAAAGCGACCCCGTGAgccacgtgtgtgtgtttgtgctccgGTGTTCTGCTTCGGATACAGTTGCGTCTCATTCTTGGATGCTTAATCTCATCCCTGTGTTTATGCGAGTGATCCACAGCTGTTCCTTCCCttgaaaaaatgacaaaatgacaaaaaaacccTATAAAACAGCATGTAAAAAGTGTactgttctctctgtgtttagCAACCTAAATCTCATGTTAACGAGTGAAAGTGCTCATCACTATTAAAACAGGACACACAGTGCGTTTACTTGCATTTCAGCTGGAATTTCTTTGCATGACAGTCACTTGAACACTAGGGTTTGGTGTTATTTCTCTTTTTGatttctcgtttttttttttctattgaatgcTGGTTTTGCCTAAACCTTTCTCTTATCTGTTTACCAgctttgttaagtgcaaatatatatatatacacacatctatatatataatatttttgtccCAAAATGATGGCAGTGTAAATGACGAAGACTATAGCTATGAAATGGTGGTATTAAATGATGGAAATGGTGATATTTCTACGGCATGCTTTTGTATTAAGCCTCATTGTTGTCGATGCAGGGTGActgatatttatataaatgactaTAAGATTACTCAATAGTATGAGACTGCTTGACTTCAGAGAAGCACTTGCAATATATGCTAAATATGCATGGGGTTTTCCAAATCTCTTTAAGCTCAATTGGACactgtcttgctgtttgtgcttTACGGATGCTCACCAGACCTGAGTGGCCAATAAAATCTGACTTTTATCAGTATTTGAAGACTATTAATGACAATTATAGCTCGGTAGATGACAGTATTTCCACCTGCGCCATCCGTCTTTTAAGCTCAGGACTGTTTCCGTTCAACTCGTCGTATCATTTCTGACTGGAAACGGTTCCGGATAGTTTCTCTGAAGTTGAGTTATCTCACAGTAGCCCtctgttagttttgttttttcgGTATAAGATAATATTCTCTTTGATTTCTGATGATTCTTACTCTTGTTATTGCTCTGTTCTCCGACATGCTCTGTGTATTCCCTGACTTAAGCAAATGTGTTCAAAAAGATATAAATAAACGAGATGATTTAAATACTAAACAA
>TCONS_00060199
CATTAACCTGTCATTTCAAGACATATCTGGCTTTTTTTTGAGCTCAACGTCGAGGCGAATATCCCTGACGCTCCAGCTCGCCGAATCAAGGACGTTTTGTTATTCTTAAAGCGTGTCCGAGTCCGAGACGGGAAGACATGGCCACGACTACATGTACGCGCTTCACGGACGAATATCAGCTGTACGAGGAGCTGGGCAAGGGAGCCTTTTCAGTGGTGCGACGATGTGTAAAGTTGAGCACAGGACAAGAATATGCCGCCAAAATCATCAACACCAAAAAACTGTCCGCAAGAGATCATCAGAAGCTGGAACGAGAAGCTCGAATCTGTCGTTTGCTGAAACACCCTAACATCGTCCGTCTGCATGACAGTATATCAGAGGAGGGCTTCCACTACCTACTCTTTGATTTGGTAACTGGAGGGGAACTGTTTGAGGACATCGTGGCCAGAGAGTATTACAGTGAAGCAGACGCCAGTCACTGCATCCAGCAGATCCTGGAGGCGGTGCTTCACTGCCATCAAATGGGTGTGGTGCACCGAGACCTGAAGCCAGAGAATCTGCTCTTGGCCAGTAAATGCAAGAACGCTGCTGTGAAGCTGGCCGACTTTGGACTGGCCATTGAGGTGCAGGGAGACCAGCAGGCATGGTTTGGATTTGCCGGGACACCAGGTTACCTGTCCCCCGAGGTGCTGAGAAAGGAGGCATATGGCAAACCAGTGGACATCTGGGCCTGTGGTGTGATTCTGTACATTCTGCTGGTTGGATATCCACCTTTCTGGGACGAGGATCAGCACAAACTTTACCAACAGATCAAAGCTGGAGCTTACGATTTTCCATCTCCAGAATGGGACACAGTTACTCCTGAAGCCAAAAACCTCATCAATCAAATGCTGACCATCAACCCTGCCAAGAGAATTACTGCACAGGAAGCTCTCAAACACCCATGGGTCTGCcaacGCTCCACTGTGGCCTCCATGATGCACAGACAGGAGACAGTGGAATGCCTGAAGAAGTTTAACGCCAGGAGGAAACTCAAGGGCGCCATCCTCACCACCATGCTTGTGTCACGAAACTTCTCTGCAGCCAAGactttgttgaacaaaaaagcaGACGTAAAGCCCCAGACAAACAGCACCAAAAACAGCATAGTCACCAGTCCCAAGGGAAACCTCCCCTCTCCTGCACTGGAGGCACAGACCACTGTCATCCATAATGCAGTGGATGGGATTAAGGAGTCGTCGGACAGCAGTAATGCCACAGTGGAGGATGAGGAAATGAAAGCTGCCACAAAGTTCACTGATCTGCTGGGTGTGGTGCGTCGGGGCTCTGTGCCCACATCTGACGCTGAGGGGGGAACCACTACCACTCCAGCTGTTGTTGCTGCCCCCTCTACTCCCCAGACCCCCAGCATCCCCACACAGATGTCACGTTTGACCGATCTAGTGAGCAGTGTGCGCAGACCCACAGTCCCGCAGACAGACAGTGAGCCATCAGCTGCCAGCAGAGCCCTTTCCCCCCCAGTATCTGTCCCATCACACCCCTCCCCTTCCCCTGCCCAAGTGTCCTCCAGCCCCCTGCCGTCAGCACATTCACGCAAACAGGAGATCATCAAAATCACTGAACAGCTTATTGAGGCCATCAACAATGGCGACTTTGAAGCCTATGCTAAAATCTGCGACCCTGGACTCACCTGCTTTGAACCTGAGGCCTTGGGAAACCTGGTGGAGGGGATGGACTTCCACAGATTTTACTTTGAGAACCTGCTCTCCAAGAACAGTAAGCCCATCCACACCACCATCCTCAACCCTCACGTGCACCTGATTGGAGAAGAGGCCGCCTGCATTGCCTACATCCGCCTCACACAGTATGTGGATGGCCAGGGCCGACCgcgcagcagccaatcagaggagaCGAGGGTGTGGCATCGCCGGGACTCCAAATGGCAGAATGTCCATTTCCACTGTTCGGGAGCTCCTGCTGCCCCTCTGCAGTGAAGGTTGAGCTCATTGTAGCAACATCTATCAAGAGAGCCCAGCCAGAAATGGAGAGTGCAGgagtgaaaaagagagagagagtgagggaggggggaagttggagagagagggaGGAAGGAAAGCGAGCCCAGTGCTGGCCAGTGCCTGACCCTCTCACACTGGGCCCCGCCCCCTCACCTGTCAATCACCTCACCTGCCAATCACTTATGTGCATCGTCTTCTGTCTTACCTTCAACTTGCCCTCCTCCctccttaaaaaaaacaacaacccacCCCTCCCCGTGTCTTTCCACCCGTGCAGAGACTCCCCTTGTCGTGCACATGTGCTGTGTGGAGTTGGACAGTCTTTGATTAAATACGGATAAATAAGGCCTCAGCGAGTCGTCTGTGAAACGCCATGCTTTCCGTCGCACCTTCCCAGTGTCAATAACGTTACACTGAATCACCGTCCTCTCTTACAAgtgttttcaatattattatgattatgattattgatTAATATTGTTCTTACTGTTGTTATATTAGTATTAAATACAAAAGCAATTGTACGTGTCACTTATACCACTCACGTTCTGGATGCCAATGATTTTACATCTATCTAAGACTTTTTGTCGTTTCCAAATGATATTTTGGAAGAGCATGACTTTTTTCAATATTATCCACTGTGGCTGTCCTTTCCTTGGTGGTTTCGGAGAAATAATGGCCGCCGTTTATGTACAGGCTTCTCAATGTGATTCACATCTAACCGACGCGTCCGTCCATGTGTGTTCAGACATAAGTGGATGATGTGTGTTAGCGCGCGCCCGTGTGACTGTTTTGAGGCAGATTTTACCAGAGCCTGGTCAAGAACGACGTGACGTTCGGGGTCTTCCAGCTTTTAGACGTTGTGTTTTTCCACACGTTTGGAATAATTCAGATTTCCTGGCAGTTTGGCGAACAATTCCTGGTTTTTCGGAAAGCCACAGTCGTGCTTTATATGTAACCCGTGACACCGATTGCAACCTTAGTATTAGATGTTGCGTTTTTTTCCTCTCGTTATTTTCAGTCTTCAGCTGAGCCAGTGGTGTTAAGAGAGCACCAGACTTGATTAAAC

Function

symbol description
camk2b1 Enables kinase activity. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and neuron projection. Is expressed in several structures, including brain; gut; hatching gland; retina; and trunk. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 54. Orthologous to human CAMK2B (calcium/calmodulin dependent protein kinase II beta).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0043005 neuron projection cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005516 calmodulin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004683 calmodulin-dependent protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9588 Enables kinase activity. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and neuron projection. Is expressed in several structures, including brain; gut; hatching gland; retina; and trunk. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 54. Orthologous to human CAMK2B (calcium/calmodulin dependent protein kinase II beta).

Ensembl:

ensembl_id ENSDARG00000011065

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060198 False 5562 mRNA 0.44 20 20931252 21030996
TCONS_00060199 True 3087 mRNA 0.50 22 20933926 21030934
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Neighbor

gene id symbol gene type direction distance location
XLOC_030977 si:ch211-225b11.4 coding downstream 9575 20886282 ~ 20921677 (-)
XLOC_030976 pik3ip1 coding downstream 51725 20866572 ~ 20879527 (-)
XLOC_030975 si:ch211-225b11.1 coding downstream 116664 20786772 ~ 20814588 (-)
XLOC_030974 wscd2 coding downstream 252952 20627200 ~ 20678300 (-)
XLOC_030973 NA coding downstream 311913 20616071 ~ 20619339 (-)
XLOC_030979 si:dkey-13n15.2 coding upstream 2775 21033771 ~ 21044693 (-)
XLOC_030980 si:dkey-13n15.2 coding upstream 28463 21059459 ~ 21065094 (-)
XLOC_030981 NA coding upstream 208337 21239333 ~ 21242084 (-)
XLOC_030982 BX470224.4 coding upstream 262134 21293130 ~ 21293245 (-)
XLOC_030983 tenm1 coding upstream 264751 21295747 ~ 21524251 (-)
XLOC_030972 NA non-coding downstream 316632 20600387 ~ 20614620 (-)
XLOC_030969 NA non-coding downstream 510881 20416722 ~ 20420371 (-)
XLOC_030968 AL845326.1 non-coding downstream 522300 20408836 ~ 20408952 (-)
XLOC_030967 NA non-coding downstream 633813 20289359 ~ 20297439 (-)
XLOC_030984 NA non-coding upstream 578362 21609358 ~ 21852227 (-)
XLOC_030985 CR848717.1 non-coding upstream 705363 21736359 ~ 21737345 (-)
XLOC_030987 NA non-coding upstream 895826 21926822 ~ 21934278 (-)

Expression

Expression of XLOC_030978(camk2b1) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.

Expression of XLOC_030978(camk2b1) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_00416204_00453589 CAMK2G, NEWGENE_621802, CAMK2B coding CI01000339 null 415451 ~ 453589 (-)
bowfin (Amia calva) AMCG00020844 NA coding CM030127.1 CM030127.1 34919818 ~ 34927630 (+)