XLOC_030980 (si:dkey-13n15.2)


Basic Information

Item Value
gene id XLOC_030980
gene name si:dkey-13n15.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 21059459 ~ 21065094 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060201
AACGGTGTGATGCGGACAATCAGCTGATCATCACTGCTGCTGCCAGTATGATAGATATGTAACGTTAACTTTAGATTGAATTGGTCATAAAATGGAGGTTCCTGCAGTAAACCAGAGCCATTCGCAGCCACCACAGGAGACATGGGCCGAACAGAGCCACTACAGGAACCCAGCCATGCCTTCTTTAAGCTGTCCAGCTCCTCCACATCACTATCCAAACCTGACCCCGGATCAGCAGAGAGCAGCATTCAGTGTGACCACAGTGAACCACATGACTGTACCACGTCCACCGTCACTGTACTGGGACCCGTCACAGCAATCACACCCAGatgcaTTTAGAGCTGTTCCTGAGATCACAAACATGTCAGCTCAAGGGATGCCACAGAAAAGCTACTCATTACCAACGAGCCCAGTGTCTAAATTAGAGTCCCGGTATGGCCTGGATCCTCAGCTTCTTCCTAGTGGTGCAGGTGATTAAAGAGGACAAGATGCAGTGGGAAGGGAAAGTGTTTGCTTCAGAGTCCAAATCTTCAGTTCCTCCTCTTTCCTCAACCTTGTGCACCCTGGAGGACAGAGGTACTGC

Function

symbol description
si:dkey-13n15.2 Predicted to enable SNARE binding activity and zinc ion binding activity. Predicted to be involved in COPII-coated vesicle cargo loading. Predicted to act upstream of or within endoplasmic reticulum to Golgi vesicle-mediated transport and intracellular protein transport. Predicted to be located in cytoplasmic vesicle and endoplasmic reticulum membrane. Predicted to be part of COPII vesicle coat. Predicted to be active in endoplasmic reticulum exit site.

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0090110 COPII-coated vesicle cargo loading biological_process
GO:0015031 protein transport biological_process
GO:0030127 COPII vesicle coat cellular_component
GO:0070971 endoplasmic reticulum exit site cellular_component
GO:0000149 SNARE binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-209 Predicted to enable SNARE binding activity and zinc ion binding activity. Predicted to be involved in COPII-coated vesicle cargo loading. Predicted to act upstream of or within endoplasmic reticulum to Golgi vesicle-mediated transport and intracellular protein transport. Predicted to be located in cytoplasmic vesicle and endoplasmic reticulum membrane. Predicted to be part of COPII vesicle coat. Predicted to be active in endoplasmic reticulum exit site.

Ensembl:

ensembl_id ENSDARG00000094417

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060201 True 583 mRNA 0.50 5 21059459 21065094
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_030979 si:dkey-13n15.2 coding downstream 14766 21033771 ~ 21044693 (-)
XLOC_030978 camk2b1 coding downstream 28463 20931252 ~ 21030996 (-)
XLOC_030977 si:ch211-225b11.4 coding downstream 137782 20886282 ~ 20921677 (-)
XLOC_030976 pik3ip1 coding downstream 179932 20866572 ~ 20879527 (-)
XLOC_030975 si:ch211-225b11.1 coding downstream 244871 20786772 ~ 20814588 (-)
XLOC_030981 NA coding upstream 174239 21239333 ~ 21242084 (-)
XLOC_030982 BX470224.4 coding upstream 228036 21293130 ~ 21293245 (-)
XLOC_030983 tenm1 coding upstream 230653 21295747 ~ 21524251 (-)
XLOC_030984 NA coding upstream 544264 21609358 ~ 21852227 (-)
XLOC_030985 CR848717.1 coding upstream 671265 21736359 ~ 21737345 (-)
XLOC_030973 NA non-coding downstream 440120 20616071 ~ 20619339 (-)
XLOC_030972 NA non-coding downstream 444839 20600387 ~ 20614620 (-)
XLOC_030969 NA non-coding downstream 639088 20416722 ~ 20420371 (-)
XLOC_030968 AL845326.1 non-coding downstream 650507 20408836 ~ 20408952 (-)
XLOC_030967 NA non-coding downstream 762020 20289359 ~ 20297439 (-)
XLOC_030987 NA non-coding upstream 861728 21926822 ~ 21934278 (-)

Expression

Expression of XLOC_030980(si:dkey-13n15.2) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.

Expression of XLOC_030980(si:dkey-13n15.2) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.

Co-expression Network