XLOC_030981


Basic Information

Item Value
gene id XLOC_030981
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 21239333 ~ 21242084 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061981
CAGCGCTGAACAGTGGGGGGAagacaaatatatttttctttttccttcatttttaaGGGTCGTCCTCCATGTGTGTGAGCAGACCTTGGAGAAGTCTCTGATTTGACTCCAGCAAGAGGCCATGAAGAAATCTAAGGAAAAGATCCAGATGTCCATTATCACTCTTCAGTGCTTCATCCACCACACCATTCAGAAACACATCCAGCGAAACCTCATCAGACTGCAGTTTGACCTTTCTTCTCCCTTTCTTCTTTTGGAATATCTTCAGGACATCACTGCTCTTGTTCAGATAGCTGGAAAACACAAAAAGTGCTGCAAAAAACTCTTGAAAGCTCAAATGAACAAAGCAGTAGACCTTCCTTGACTTGATCACAGATTCCTCATCAAAGAACTCAGTGCAAAACCCGGAGTGCACACAGGCCTCATTGACATCTATGCCACACGCTTTCAGGTCCTCATCATAAAACAGGACATGACCATTCATCAGACCTTTGAAAGCCAGTTCAGCAAGTTTCAATATCAAATCTCTGCTTGCCTCCAGCAGCAATTTTAGATCTTTCTCAATTCCCTCGACATTCTGATCAAACTTCTGCCTCTTCACATCCGTCTGGATGATCAGAAAATGTATGTACATCTCTGTTAATGTTTTAGGGATTTCTGCACTGAGATCCTGTTCCAGGATGTTCTGAAGCACAGTGGCTGTGATACAGCAGAAGACCGGTATATGGCACATTATGTGAAGGCTTCTTGCTGCTCTAATGtgtgagatgattctgctggcctGATCCTGGTTGCTGAtcctcttcctgaaatattcctccttttGAGGGTCACTGAATCCTTGCACTTCTGTCACACGGCTGATGTAATGTGAGGGGATATGGCTGGCTGCTGCGGGTCTGgatgtgatccagatgagagcagagggcaGCAACTCCCCCTTGATGAGATTTGACAACAACATGCTCACAGATGAGCTTGTGGACACATCAGAAATCTTCTCACAGTGTGAAAATGTCAGGGTAATTCtactttcatccagaccatcaaagacaAACAAGACTTTACATAAATCATAAATCCTAGTGTTTATCTCCAAAAGTTCTGGATGAAAGTCAAGCAGAAGTTTGTGAAGACTGTATTGGTCATCTTTAACTAAGTTAAGTTCCCGAAATGGAAGAACAAAGAGAAAATCGACATCCTGATTTGCTTTTCCCTCAGCCCAatccagaatgaacttctgcacagagacggtttttccAATTCCAGCAATTCCTTTGGTGAGAACAGTCCTCACTTTGTCTTTCTCATCACTTCTTCCATAACATGGATCATGTACGGGCTGAAAAATGTCATTGCAGTTAATTGGAGTGCCTTGTAAGCGTTCAGTCTTGGCCTTTTCAATTTGCacaacctcatgttcttcattcaccccttctctctctccctctattATATAAAGCTGTGTGTAAATCTTATTCAGGAgggttttgttttcttgtttgttgAATCCTTCGCATAAACTCTCATACTTCTGCTTTATGCTGGTTTTGTGATGCTCTTTGATACGCTGAGAGATTTCATCTACTGATTGGAAAATGTTGAGCTGCTCTCCAGCAGAACTGGACCCTGGCTGTGGGCACTCAGGCTGATCTTGAACTACCCTGTggctaaaaaaaagacaaaagagatcaaaaacaaatagaagaatgAAATCAATTGAAATAATATTGCTATGTAGAACTTCATATTGAGAAAATGCTATAGGCTACACTGAACACCCACAGACTGCTTTGTCTTGTTTGAATGTGACAACACATAAATTGCATTCTGTCCTCTACGTGTACAGAGCCATGGCAGTGTTTACATtgacaaatgcaaattaaattcagTTTGAAAAGAAACTAAATTTACATAACGGCGTTTGGCTTCTTTTGTAGCTTTagaaaaaaatacagttgaagtcagaattattagcccccctttgattttttttttttttttttttagatatttcttaaatgatgtttaacagagcaagaaagtttACACAgtttttctgataatatttttttgttctggagaaagtcttatttgttttgatttcggctaagataaaagcagttttttaattttttaaaaacattttaaggtcaaaactattagctcctttaagctatatttttcgatagtctacagaacaaaccatcattatacaatgacttgcctaattaccctaacctacctagttaacctaactaacatcgttaagcctttaaatgttactttaagctgtatagaagtgtcttgaaaaatatcttgtcaaatattatttactgtcaaaatagcaaagataaaacaaatcagtcattagaaatgggtaattaaaactattatgttcagaaatgtgttgaagaaatcttatCCCTTCAACTGTGGGTTGCTTTTCTTTCTGTCCTTGGTCAGTCACATACTGTACTCTCACATTATTGGGCATTATCTAAATTTTCAtagatataaaataatgtaaattaaatagattgttgcatgttttacaATATGCAGTAATAAATGTGAACACGCATTGAATTTCTCATTATTTACCGCACACTTTG

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0045934 negative regulation of nucleobase-containing compound metabolic process biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061981 True 2615 lncRNA 0.38 2 21239333 21242084
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_030980 si:dkey-13n15.2 coding downstream 174239 21059459 ~ 21065094 (-)
XLOC_030979 si:dkey-13n15.2 coding downstream 194640 21033771 ~ 21044693 (-)
XLOC_030978 camk2b1 coding downstream 208337 20931252 ~ 21030996 (-)
XLOC_030977 si:ch211-225b11.4 coding downstream 317656 20886282 ~ 20921677 (-)
XLOC_030976 pik3ip1 coding downstream 359806 20866572 ~ 20879527 (-)
XLOC_030982 BX470224.4 coding upstream 51046 21293130 ~ 21293245 (-)
XLOC_030983 tenm1 coding upstream 53663 21295747 ~ 21524251 (-)
XLOC_030984 NA coding upstream 367274 21609358 ~ 21852227 (-)
XLOC_030985 CR848717.1 coding upstream 494275 21736359 ~ 21737345 (-)
XLOC_030986 smarca1 coding upstream 610630 21852714 ~ 21888368 (-)
XLOC_030973 NA non-coding downstream 619994 20616071 ~ 20619339 (-)
XLOC_030972 NA non-coding downstream 624713 20600387 ~ 20614620 (-)
XLOC_030969 NA non-coding downstream 818962 20416722 ~ 20420371 (-)
XLOC_030968 AL845326.1 non-coding downstream 830381 20408836 ~ 20408952 (-)
XLOC_030967 NA non-coding downstream 941894 20289359 ~ 20297439 (-)
XLOC_030987 NA non-coding upstream 684738 21926822 ~ 21934278 (-)
XLOC_030993 CR812469.1 non-coding upstream 845572 22087656 ~ 22096908 (-)

Expression

Expression of XLOC_030981 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4.
End of interactive chart.

Co-expression Network