XLOC_030984


Basic Information

Item Value
gene id XLOC_030984
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 21609358 ~ 21852227 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061982
CGCGTTTCTGGCCACGTGGGCGCGCTGTTGTACTTTGCTCGTTCCCGCCAGCGCGCGACACCTCATTCTCCCAGTCTGGCTGTTTAGTGTGTAACACGCGCCCTCACACTTTCTGTCACACACTCCAACAACGTGAGTACAGAAACCGGTTGTCTTAAATGCACGAAGAAACACATGAGCGAGCAGAGATAAGTCTGCTGGCCGGTATCTGACTCAGGTTTCACTCTGAGCACATCATTGGTTCTGGTGACATCCGTTACTTTGCCGCGCTGATGACATCTTATTTAAGCGCGCAGGCAGATGACAAGACGAGAAACCTTTACTATCAGGCTTGTCTCTTCCTGCATGGATGATCAATAAATCAGCAGCCTCACTGGCCGAACACAAGAAAGAAATAGACAATCCTCTCAAGACGAGCTATACTATAGCAATGTATGGGAAACCAGTTAAATTCAGGTGATGCCGACCGCCCGCTGTGTATCCTGACCTTTTCGCTGGAACCAGGATTCAGGAGCGGATGTGAAATATATCTGTACATATAAGGCAGCAAATTTgaaCCAGACGTTTTCTCACCATGAAGATGTCTAAGCAAGCAGCTAACCAGTGTTTTGAAGACCATTGGGAATGGGAGTCTGCGGTTACAGTGACAGCGTACAGAGTCCGAAacatgagacaaaaaaaaaaaaacccacatgaTCATAtggtgaaaaggaacaaaaaggGCAGGAAGAGagcaggagggctggagggctttcccaccgcagtcagtttgtcctgttagctcatcgtgtgcgtcggcggacttcagatgcagagaggaggagttgacaaaggcatccgggttcgagtccggggaagagcggttccagaaatcaggtaagacaaaaacagaacccaaaaaataaagtgaa
>TCONS_00061983
CACGTGGGCGCGCTGTTGTACTTTGCTCGTTCCCGCCAGCGCGCGACACCTCATTCTCCCAGTCTGGCTGTTTAGTGTGTAACACGCGCCCTCACACTTTCTGTCACACACTCCAACAACGTGAGTACAGAAACCGGTTGTCTTAAATGCACGAAGAAACACATGAGCGAGCAGAGATAAGTCTGCTGGCCGGTATCTGACTCAGGTTTCACTCTGAGCACATCATTGGTTCTGGTGACATCCGTTACTTTGCCGCGCTGATGACATCTTATTTAAGCGCGCAGGCAGATGACAAGACGAGAAACCTTTACTATCAGGCTTGTCTCTTCCTGCATGGATGATCAATAAATCAGCAGCCTCACTGGCCGAACACAAGAAAGAAATAGACAATCCTCTCAAGACGAGCTATACTATAGCAATGTATGGGAAACCAGTTAAATTCAGGTATTCACGGACGGGTGCGGACAACCGTGAGGACAATATGTCAGGACA
>TCONS_00061984
CACGTGGGCGCGCTGTTGTACTTTGCTCGTTCCCGCCAGCGCGCGACACCTCATTCTCCCAGTCTGGCTGTTTAGTGTGTAACACGCGCCCTCACACTTTCTGTCACACACTCCAACAACGTGAGTACAGAAACCGGTTGTCTTAAATGCACGAAGAAACACATGAGCGAGCAGAGATAAGTCTGCTGGCCGGTATCTGACTCAGGTTTCACTCTGAGCACATCATTGGTTCTGGTGACATCCGTTACTTTGCCGCGCTGATGACATCTTATTTAAGCGCGCAGGCAGATGACAAGACGAGAAACCTTTACTATCAGGCTTGTCTCTTCCTGCATGGATGATCAATAAATCAGCAGCCTCACTGGCCGAACACAAGAAAGAAATAGACAATCCTCTCAAGACGAGCTATACTATAGCAATGTATGGGAAACCAGTTAAATTCAGCCAGTGTCCCAGTTTCAGGACCACGGACAGCAGCCCTTGAATTCAGCGGTTTTCTGTTCAG
>TCONS_00061985
CACGTGGGCGCGCTGTTGTACTTTGCTCGTTCCCGCCAGCGCGCGACACCTCATTCTCCCAGTCTGGCTGTTTAGTGTGTAACACGCGCCCTCACACTTTCTGTCACACACTCCAACAACGTGAGTACAGAAACCGGTTGTCTTAAATGCACGAAGAAACACATGAGCGAGCAGAGATAAGTCTGCTGGCCGGTATCTGACTCAGGTTTCACTCTGAGCACATCATTGGTTCTGGTGACATCCGTTACTTTGCCGCGCTGATGACATCTTATTTAAGCGCGCAGGCAGATGACAAGACGAGAAACCTTTACTATCAGGCTTGTCTCTTCCTGCATGGATGATCAATAAATCAGCAGCCTCACTGGCCGAACACAAGAAAGAAATAGACAATCCTCTCAAGACGAGCTATACTATAGCAATGTATGGGAAACCAGTTAAATTCAGTGACCCACCACATCCCCCTCCCCTTCCATTCGaggtaaagagagagagaggttgaGGCAGAGAGGGATGGTTTCCCTGAAGGCTGGTTTATAAG
>TCONS_00061986
CACGTGGGCGCGCTGTTGTACTTTGCTCGTTCCCGCCAGCGCGCGACACCTCATTCTCCCAGTCTGGCTGTTTAGTGTGTAACACGCGCCCTCACACTTTCTGTCACACACTCCAACAACGTGAGTACAGAAACCGGTTGTCTTAAATGCACGAAGAAACACATGAGCGAGCAGAGATAAGTCTGCTGGCCGGTATCTGACTCAGGTTTCACTCTGAGCACATCATTGGTTCTGGTGACATCCGTTACTTTGCCGCGCTGATGACATCTTATTTAAGCGCGCAGGCAGATGACAAGACGAGAAACCTTTACTATCAGGCTTGTCTCTTCCTGCATGGATGATCAATAAATCAGCAGCCTCACTGGCCGAACACAAGAAAGAAATAGACAATCCTCTCAAGACGAGCTATACTATAGCAATGTATGGGAAACCAGTTAAATTCAGattATGCATCAAAAAACGAGGAAACCACACTTTGACCACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061982 False 911 lncRNA 0.48 5 21609358 21852227
TCONS_00061983 False 492 lncRNA 0.49 3 21756657 21852215
TCONS_00061984 False 505 lncRNA 0.49 3 21797940 21852215
TCONS_00061985 False 538 lncRNA 0.49 3 21812085 21852215
TCONS_00061986 True 484 lncRNA 0.48 3 21818946 21852215
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_030983 tenm1 coding downstream 85107 21295747 ~ 21524251 (-)
XLOC_030982 BX470224.4 coding downstream 316113 21293130 ~ 21293245 (-)
XLOC_030981 NA coding downstream 367274 21239333 ~ 21242084 (-)
XLOC_030980 si:dkey-13n15.2 coding downstream 544264 21059459 ~ 21065094 (-)
XLOC_030979 si:dkey-13n15.2 coding downstream 564665 21033771 ~ 21044693 (-)
XLOC_030986 smarca1 coding upstream 487 21852714 ~ 21888368 (-)
XLOC_030987 NA coding upstream 74595 21926822 ~ 21934278 (-)
XLOC_030988 arhgef9a coding upstream 87506 21939733 ~ 22001053 (-)
XLOC_030989 amer1 coding upstream 159348 22011575 ~ 22019061 (-)
XLOC_030990 asb12a coding upstream 168915 22021142 ~ 22027357 (-)
XLOC_030973 NA non-coding downstream 990019 20616071 ~ 20619339 (-)
XLOC_030972 NA non-coding downstream 994738 20600387 ~ 20614620 (-)
XLOC_030969 NA non-coding downstream 1188987 20416722 ~ 20420371 (-)
XLOC_030993 CR812469.1 non-coding upstream 235429 22087656 ~ 22096908 (-)
XLOC_030995 NA non-coding upstream 378463 22230690 ~ 22235158 (-)
XLOC_030997 BX546499.2 non-coding upstream 583559 22435786 ~ 22438595 (-)
XLOC_030998 NA non-coding upstream 601603 22453830 ~ 22455994 (-)

Expression

Expression of XLOC_030984 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.

Expression of XLOC_030984 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G480884 NA non-coding CI01000339 null 930162 ~ 930412 (+)
rainbow trout (Oncorhynchus mykiss) G485539 NA non-coding NC_048570.1 CM023224.2 22120182 ~ 22120434 (+)