XLOC_030988 (arhgef9a)



Basic Information


Item Value
gene id XLOC_030988
gene name arhgef9a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 21939733 ~ 22001053 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00060210
agagagagagagagagagacgcagaCTCCCACCTCGCCGTGAGAGCTGAGCAGTGTCTAACCGGACGTGCGTTTCTCTTCCATACACCGCGCGTTGCTCACGGGGGCGCGGATCCAGGGTTGCAGCTGGCGTCGGGGGCTCGAACCTGCGGAAAGGACACTGATCCAGGACCGGGACTGACCCTGAGGATGATGAAGTTGGTCAGCGGGGGCTCTGTAGTGAATGCCGAGGCAGTATGGGACCATGTGACAATGGCTGACCGGGAGCTGGCCTTCAAGGCCGGTGATGTCATCAAGGTGTTGGACGCCTCGAATAAGGACTGGTGGTGGGGTCAAATCGACGAGGAGGAGGGCTGGTTTCCCGCCAGCTTCGTCAGGGTGGAGTCCCACCCCCCTCAATCCAAACAGCTTTTTTATATCAACCCTGTCGCTGCATCACGCCTCACAAACGCCACGGCTAAGTTATGGGTAAATCAGGAGGAAAACACAGCGGTCGAGGTTGCCGAAAGCTCCAGCGAAGTACAGAATGGCCATGCGGAGGCCAGTCCGAACCCCAGCACAGACTGCTTGTGCCTGGGCCAGCCCACTCAGAACCGGGACCAGATGAGGGCCAACGTCATCAACGAGATCATGAGCACAGAACGACATTACATCAAACACCTGAAAGACATCTGTGAGGGGTATCTTCGCCAGTGTAAAAAGCGAAGAGACATGTTCAACGACGATCAGCTGAAAGTGATCTTCGGAAATATAGAAGACATTTACAGATTCCAGCTAAGCTTTGTCAGAGACctggagaaacagttcaacaCAGAAGAACCTCATCTCAGTGAGATCGGACCCTGCTTTCTGGAACACCAAGATGGATTCTGGATCTACTCTGAATACTGTAACAATCACGTTGACGCCTGCATGGAGCTCACACGTCTGATGCGAGACGCACGATACCAGCACTTCTTTGAAGCGTGTCGATTGGTTCAGCAGATGATCGACATCGCCATCGACGGCTACTTGCTCACACCGGTTCAGAAAATCTGCAAATACCCTCTACAGCTGGCAGAGTTACTGAAATACACGGTACAAGAACACAGTGATTATCGGTACGTGGCTGCTGCGCTAGCTGTAATGAGAAATGTCACTCAGCAAATCAACGAACGCAAACGAAGGCTTGAGAACATCGACAAAATTGCCCAATGGCAGGCCTCTGTGCTGGACTGGGAGGGTGAGGATATTCTGGACAGGAGCTCAGAGCTTGTGTACACCGGGGAGATGTCCTGGATTTATCAACCATATGGACGCAGCCAAACCAGAATCTTCTTCCTATTCGATCATCAGATGGTCCTCTGTAAGAAGGATCTCATTCGCAGAGATATTCTCTACTATAAGGGGCGGATTGATTTGGATCGATACGAGGTCATTGATGCAATCGATGGCCGAGATGATGATTTTAACGTTAGTGTGAAGAACGCCTTCAAACTGGCCAACCGAGACACAGACGAGATCCATCTGTTCCTGCCCAAAAAGCTGGAGGAGAAAATCCGTTGGCTTCGGGCATTTCAAGAGGAAAGAAAGATGGTCCAGGAAGACGAAAAAATTGgaTTTGAAATCTCTCAGTATCAGAAAAGGCAAGCCGCACTGACCGTTAGGAGAGCTACCAAACAGAAAGgtgtGGGCCGGTCGGTTCCACCAGCATACCCACCTCCAGTGGACCCAATGAACCCCGGGCAGTACCTCCTTCCTGACGGCTACGGGCAGGCAGACGGATACGAGTACGAGCCCAAACGCAGCACATCCCCCTTCTGGCAGAACTTCAGTCGGTTAGCACCCTTTAAAAAATAGACCACACATCCACCAGGGGTCAGATATTCTGCCTCTGTATACTTGGAAAAGCACTATTCTATTTAAGATACAACTGCGGGACTTGAGGACCGACGCAACACACAAACTACAGGAGAGAGGACGGACCTTGCTTTACCGGGGTTTACCAGGCGTATTTCTTTTACTGGGGTTACGGGGACACCTCGCCGGGCCGGCTGCACTGAATTCTGCACACCACATCACCATATTCATCCAAAAAGAAGATCTCACACGTACTCAAAACACATTTTATCCCTCAGCGCTCTCTTTTTAGAGAGGTTTTAAATTCTGAAACCAGACGTAAAACATAAGATCACCTATGATTTCCTCTTCTTCTCTTCACAAATTGACTGAAAGTGAGTTTTCACCTTTTTAAGCACTAAATCACCGTAAAGACTCTTGCTCTCTAGCGCCGCCCTGGTGTTCCTCCGTGCACTGTGACTATTTGGGGCATTCTCTTTCACCCAGTCTCTCTTTTTCCTCTCTCGATCTCATACTCCACATGTTTTCCCAACAGTTTTCGCAAGCTGGTCAAAGCTgaagattttttgtttgtttctcctGGACAACTTCTCCTCGGATGGAACCTGCTGcacttttttgttgattttgcatgaGTTTCAGTTCATTGCAggtcttttttatttgtgtaattcTCTTTGTACGGGTCTCTAAGAACAGTGGATCACAATCTGCAAATTTGTCACGAGTTGTTTCTATGAATCTACTGGGATCTACATTCAGAGAACCcacaatcaatcaaccaatcaatcaattagttTTAGTTTACCTTGAATAAACTACAGACCAGAGAAAGCCAAAGGAGGATCTGCACCTCTGTAGCGTGTTTACACCAGAGCCTGGTTTTTCCTGAGGTCTCGATTTTGGCTTGATCATTAATTCCTCTCTCCCATCACCAACCTGACACATGACCGGATCAGGGGGGGAGGGAAAAAAGAGTAATAATACCACCTctcaatcatgttttcattttctaGGAGATGATATTCAGACCAGGTCGACTGTAATCCTGCTGCTCAACCTCGTAATGACGTGCCAATTCATCTCTAACATGCCAAAATTGTCTGGTTGCCAAATTTTCCTCTAACAGGTGCATTGGCATGAGTGAATGCCAACCCCATGAGCTGGTACCCCGCCATGTGACT
>TCONS_00060211
TTGGTCAGCGGGGGCTCTGTAGTGAATGCCGAGGCAGTATGGGACCATGTGACAATGGCTGACCGGGAGCTGGCCTTCAAGGCCGGTGATGTCATCAAGGTGTTGGACGCCTCGAATAAGGACTGGTGGTGGGGTCAAATCGACGAGGAGGAGGGCTGGTTTCCCGCCAGCTTCGTCAGGTTATGGGTAAATCAGGAGGAAAACACAGCGGTCGAGGTTGCCGAAAGCTCCAGCGAAGTACAGAATGGCCATGCGGAGGCCAGTCCGAACCCCAGCACAGACTGCTTGTGCCTGGGCCAGCCCACTCAGAACCGGGACCAGATGAGGGCCAACGTCATCAACGAGATCATGAGCACAGAACGACATTACATCAAACACCTGAAAGACATCTGTGAGGGGTATCTTCGCCAGTGTAAAAAGCGAAGAGACATGTTCAACGACGATCAGCTGAAAGTGATCTTCGGAAATATAGAAGACATTTACAGATTCCAGCTAAGCTTTGTCAGAGACctggagaaacagttcaacaCAGAAGAACCTCATCTCAGTGAGATCGGACCCTGCTTTCTGGAACACCAAGATGGATTCTGGATCTACTCTGAATACTGTAACAATCACGTTGACGCCTGCATGGAGCTCACACGTCTGATGCGAGACGCACGATACCAGCACTTCTTTGAAGCGTGTCGATTGGTTCAGCAGATGATCGACATCGCCATCGACGGCTACTTGCTCACACCGGTTCAGAAAATCTGCAAATACCCTCTACAGCTGGCAGAGTTACTGAAATACACGGTACAAGAACACAGTGATTATCGGTACGTGGCTGCTGCGCTAGCTGTAATGAGAAATGTCACTCAGCAAATCAACGAACGCAAACGAAGGCTTGAGAACATCGACAAAATTGCCCAATGGCAGGCCTCTGTGCTGGACTGGGAGGGTGAGGATATTCTGGACAGGAGCTCAGAGCTTGTGTACACCGGGGAGATGTCCTGGATTTATCAACCATATGGACGCAGCCAAACCAGAATCTTCTTCCTATTCGATCATCAGATGGTCCTCTGTAAGAAGGATCTCATTCGCAGAGATATTCTCTACTATAAGGGGCGGATTGATTTGGATCGATACGAGGTCATTGATGCAATCGATGGCCGAGATGATGATTTTAACGTTAGTGTGAAGAACGCCTTCAAACTGGCCAACCGAGACACAGACGAGATCCATCTGTTCCTGCCCAAAAAGCTGGAGGAGAAAATCCGTTGGCTTCGGGCATTTCAAGAGGAAAGAAAGATGGTCCAGGAAGACGAAAAAATTGgaTTTGAAATCTCTCAGTATCAGAAAAGGCAAGCCGCACTGACCGTTAGGAGAGCTACCAAACAGAAAGgtgtGGGCCGGTCGGTTCCACCAGCATACCCACCTCCAGTGGACCCAATGAACCCCGGGCAGTACCTCCTTCCTGACGGCTACGGGCAGGCAGACGGATACGAGTACGAGCCCAAACGCAGCACATCCCCCTTCTGGCAGAACTTCAGTCGGTTAGCACCCTTT
>TCONS_00060212
TTAAACACAAGACGAATCACACATTAAATCACTCTGTAGATATGTTGAGGAACTAATTGTTCCATCTCCTATGTTTTTTACGTGCAGCAAGATGGATTCTGGATCTACTCTGAATACTGTAACAATCACGTTGACGCCTGCATGGAGCTCACACGTCTGATGCGAGACGCACGATACCAGCACTTCTTTGAAGCGTGTCGATTGGTTCAGCAGATGATCGACATCGCCATCGACGGCTACTTGCTCACACCGGTTCAGAAAATCTGCAAATACCCTCTACAGCTGGCAGAGTTACTGAAATACACGGTACAAGAACACAGTGATTATCGGTACGTGGCTGCTGCGCTAGCTGTAATGAGAAATGTCACTCAGCAAATCAACGAACGCAAACGAAGGCTTGAGAACATCGACAAAATTGCCCAATGGCAGGCCTCTGTGCTGGACTGGGAGGGTGAGGATATTCTGGACAGGAGCTCAGAGCTTGTGTACACCGGGGAGATGTCCTGGATTTATCAACCATATGGACGCAGCCAAACCAGAATCTTCTTCCTATTCGATCATCAGATGGTCCTCTGTAAGAAGGATCTCATTCGCAGAGATATTCTCTACTATAAGGGGCGGATTGATTTGGATCGATACGAGGTCATTGATGCAATCGATGGCCGAGATGATGATTTTA
>TCONS_00060213
CAGTGTCTAACCGGACGTGCGTTTCTCTTCCATACACCGCGCGTTGCTCACGGGGGCGCGGATCCAGGGTTGCAGCTGGCGTCGGGGGCTCGAACCTGCGGAAAGGACACTGATCCAGGACCGGGACTGACCCTGAGGATGATGAAGTTGGTCAGCGGGGGCTCTGTAGTGAATGCCGAGGCAGTATGGGACCATGTGACAATGGCTGACCGGGAGCTGGCCTTCAAGGCCGGTGATGTCATCAAGGTGTTGGACGCCTCGAATAAGGACTGGTGGTGGGGTCAAATCGACGAGGAGGAGGGCTGGTTTCCCGCCAGCTTCGTCAGGTTATGGGTAAATCAGGAGGAAAACACAGCGGTCGAGGTTGCCGAAAGCTCCAGCGAAGTACAGAATGGCCATGCGGAGGCCAGTCCGAACCCCAGCACAGACTGCTTGTGCCTGGGCCAGCCCACTCAGAACCGGGACCAGATGAGGGCCAACGTCATCAACGAGATCATGAGCACAGAACGACATTACATCAAACACCTGAAAGACATCTGTGAGGGGTATCTTCGCCAGTGTAAAAAGCGAAGAGACATGTTCAACGACGATCAGCTGAAAGTGATCTTCGGAAATATAGAAGACATTTACAGATTCCAGCTAAGCTTTGTCAGAGACctggagaaacagttcaacaCAGAAGAACCTCATCTCAGTGAGATCGGACCCTGCTTTCTGGAACACCAAGATGGATTCTGGATCTACTCTGAATACTGTAACAATCACGTTGACGCCTGCATGGAGCTCACACGTCTGATGCGAGACGCACGATACCAGCACTTCTTTGAAGCGTGTCGATTGGTTCAGCAGATGATCGACATCGCCATCGACGGCTACTTGCTCACACCGGT

Function


symbol description
arhgef9a Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be located in cytoplasm and postsynaptic density. Is expressed in retinal ganglion cell layer. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 8. Orthologous to human ARHGEF9 (Cdc42 guanine nucleotide exchange factor 9).

GO:

id name namespace
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-271 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be located in cytoplasm and postsynaptic density. Is expressed in retinal ganglion cell layer. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 8. Orthologous to human ARHGEF9 (Cdc42 guanine nucleotide exchange factor 9).

Ensembl:

ensembl_id ENSDARG00000061746

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00060210 False 3022 mRNA 0.49 11 21939733 22001053
TCONS_00060211 False 1548 mRNA 0.51 9 21940926 21970881
TCONS_00060212 False 679 processed_transcript 0.46 4 21943382 21952134
TCONS_00060213 True 890 mRNA 0.54 5 21951881 22001003

Neighbor


gene id symbol gene type direction distance location
XLOC_030987 NA coding downstream 5455 21926822 ~ 21934278 (-)
XLOC_030986 smarca1 coding downstream 51365 21852714 ~ 21888368 (-)
XLOC_030984 NA coding downstream 87506 21609358 ~ 21852227 (-)
XLOC_030985 CR848717.1 coding downstream 202388 21736359 ~ 21737345 (-)
XLOC_030983 tenm1 coding downstream 415482 21295747 ~ 21524251 (-)
XLOC_030989 amer1 coding upstream 10522 22011575 ~ 22019061 (-)
XLOC_030990 asb12a coding upstream 20089 22021142 ~ 22027357 (-)
XLOC_030991 mtmr8 coding upstream 26535 22027588 ~ 22052852 (-)
XLOC_030992 zc4h2 coding upstream 72657 22073710 ~ 22082918 (-)
XLOC_030993 CR812469.1 coding upstream 86603 22087656 ~ 22096908 (-)
XLOC_030982 BX470224.4 non-coding downstream 646488 21293130 ~ 21293245 (-)
XLOC_030981 NA non-coding downstream 697649 21239333 ~ 21242084 (-)
XLOC_030995 NA non-coding upstream 229637 22230690 ~ 22235158 (-)
XLOC_030997 BX546499.2 non-coding upstream 434733 22435786 ~ 22438595 (-)
XLOC_030998 NA non-coding upstream 452777 22453830 ~ 22455994 (-)
XLOC_030999 NA non-coding upstream 454513 22455566 ~ 22457289 (-)

Expression



Co-expression Network