XLOC_031009 (uprt)


Basic Information

Item Value
gene id XLOC_031009
gene name uprt
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 23107804 ~ 23118290 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060249
GTGACGTCAGGTTGTTTTTCCCGGGAGCGTGCGTCATGTCGCCTCCGCTCCGCTTTAGATATGGCGAGAAGGTGGTAGTAACGTATACATTCACGGAAACCATCCACCGCGGAGCAGCCTTCATTTAAGTGGACCAGGCGGTATAGGGAAgtgatttcttattttttctgtAGTTTGTAGTCCTATGGAAACGGCCATAATCGAGACGATGCCGTGCCATAACCAGCAGCTTAATAATAACAGTGAGAGCCCTGAACACGCCGCCAAGCACGTCCGCTTTGCCCAGAGCAGCGCTGCCGCTGCGGAGACCTGTCAAAACGACGCCGAACAGCCTGAATACCAAACCACAAGCGAAATCCATCAACAAATAGGACCTCAGCTGAAGCTGTTGCCATTAAACGACCAAATACGAGAACTTCAGACTATCATTCGGGACAAAACTACCAGTAGAGGTGATTTTGTGTTCTGTGCTGACAGATTGATCAGATTAGTTGTGGAAGAAGGCCTCAATCAGCTTCCATACAGTGAATGTACTGTAACCACGCCAACAGGACATAAATATGAGGGTGTGAAGTTCGAGAAGGGGAACTGTGGGGTCAGCATCATGAGGAGTGGTGAGGCTATGGAGCAAGGGCTGAGAGATTGCTGCAGATCAATCCGTATTGGGAAGATCCTGATCCAGAGCGACGAAGAGACACAAAAAGCCAAAGTGTACTATGCAAAATTTCCTCCTGACATCAGCAGGAGGAAGGTTCTACTCATGTACCCTATACTCAGTACAGGCAACACTGTGATAGAAGCGGTGCGGGTGCTGACTGAACATGGCCTGCAGGCCAAACATATCATACTACTGAGTCTGTTCTCTACTCCACACGGTGCACGGTCCATTGTTCAGGAGTTTCCTGACATCACTATACTGACAACTGAAGTTCATGCTGTTGCTCCAACACACTTCGGCCAGAGATATTTCGGCACAGACTGACAGCCCACCAACTCCACACAATATGACTCCACCTCCCCCTcctcattcatttgttttaaaatacttGACCAGCTCAAATCAAGTGTACATGTGTGATTTGTTCTCTGTATTTTAAGTGCATATGTATTTATCCATGTTTAATGGATGGATCAAAGTGATCTTCTAAAATCATGCTTCTCCATGATACCACTGGGATGAAAACACACCATTTCTGAACATTCTGGAGTGatgataaataaatcaaatattttctattata
>TCONS_00061531
TGTTTTGCAATATCCTGATAATATCATATATTGTGAACAAGAAAGCTTGATTTATTGTCAAATATATTGTAACAGTTTGTGACTTTTCCCATTTCTCTGTCTCAGAACTACCAGTAGAGGTGATTTTGTGTTCTGTGCTGACAGATTGGTAAGCATTGTGTGTAAATATCATATTTGTGGTTTATAAGCAGCTATTGTCCTTGTAAATAAAAGCAGCCCACACGAGTAATTTTGCAATCAACACAGAGAATGTATGGTTGATTGCATTTCACATTCACCGTAGTACTGAAGAAtcaacttgattgttttttttgtatcGCAAAATTAGTATTGACTcatgttttgtatttgtttgctCCCCCTTCCTCCCCTCAATCTGCatcttgattgtttgtttgtttgtttgtttgttctgctACCAGATCAGATTAGTTGTGGAAGAAGGCCTCAATCAGCTTCCATACAGTGAATGTACTGTAACCACGCCAACAGGACATAAATATGAGGGTGTGAAGTTCGAGAAGGGGAACTGTGGGGTCAGCATCATG
>TCONS_00060250
CACCTCCCGTTACACCCGGGCCGCGCGTCCCGCCCGCTCTTAAGCCTCCGTTTGGTCGCTCGGCGTGTGGACTGCTGTCatatgatgttgttgttgttgtgttttttgtaaGCCTCTTCAATGCAGCGCCCTCACCATGTTTGCCCCGTCTCGCGAGCCCGGACTGCCTCTCCGGTAGCAGCAGGTGGACGCACCTCTCGCGCCTCGGAGCCCCTCTACCACTCCATTTTATCCCCTCGCGCTCCAGGGTTTCCAGGAAACAAACAAAGTTTGTAGTCCTATGGAAACGGCCATAATCGAGACGATGCCGTGCCATAACCAGCAGCTTAATAATAACAGTGAGAGCCCTGAACACGCCGCCAAGCACGTCCGCTTTGCCCAGAGCAGCGCTGCCGCTGCGGAGACCTGTCAAAACGACGCCGAACAGCCTGAATACCAAACCACAAGCGAAATCCATCAACAAATAGGACCTCAGCTGAAGCTGTTGCCATTAAACGACCAAATACGAGAACTTCAGACTATCATTCGGGACAA

Function

symbol description
uprt Predicted to enable GTP binding activity. Predicted to act upstream of or within nucleoside metabolic process. Predicted to be located in nucleus. Predicted to be active in cytosol. Orthologous to human UPRT (uracil phosphoribosyltransferase homolog).

GO:

id name namespace
GO:0009116 nucleoside metabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism

ZFIN:

id description
ZDB-GENE-040426-2411 Predicted to enable GTP binding activity. Predicted to act upstream of or within nucleoside metabolic process. Predicted to be located in nucleus. Predicted to be active in cytosol. Orthologous to human UPRT (uracil phosphoribosyltransferase homolog).

Ensembl:

ensembl_id ENSDARG00000035549

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060249 False 1241 mRNA 0.46 7 23107804 23117078
TCONS_00061531 False 548 lncRNA 0.37 2 23113037 23113699
TCONS_00060250 True 534 mRNA 0.55 2 23116641 23118290

Neighbor

gene id symbol gene type direction distance location
XLOC_031008 NA coding downstream 133163 22956895 ~ 22974641 (-)
XLOC_031007 si:ch211-26b3.4 coding downstream 155648 22871718 ~ 22952156 (-)
XLOC_031006 apool coding downstream 239154 22851857 ~ 22868650 (-)
XLOC_031005 zgc:113208 coding downstream 486387 22605530 ~ 22621417 (-)
XLOC_031004 casp22 coding downstream 504825 22585269 ~ 22602979 (-)
XLOC_031010 si:dkey-114c15.5 coding upstream 58203 23176493 ~ 23179335 (-)
XLOC_031011 iqcd coding upstream 77777 23196067 ~ 23200880 (-)
XLOC_031012 BX640521.1 coding upstream 104411 23222701 ~ 23222819 (-)
XLOC_031013 plp1b coding upstream 149831 23268121 ~ 23280098 (-)
XLOC_031014 nlgn3b coding upstream 165600 23283890 ~ 23317477 (-)
XLOC_031001 NA non-coding downstream 597740 22506445 ~ 22510064 (-)
XLOC_030999 NA non-coding downstream 650515 22455566 ~ 22457289 (-)
XLOC_030998 NA non-coding downstream 651810 22453830 ~ 22455994 (-)
XLOC_030997 BX546499.2 non-coding downstream 669209 22435786 ~ 22438595 (-)
XLOC_031015 CT025748.1 non-coding upstream 212863 23331153 ~ 23341623 (-)
XLOC_031017 NA non-coding upstream 327954 23446244 ~ 23456234 (-)
XLOC_031029 BX957257.2 non-coding upstream 639643 23757933 ~ 23758587 (-)
XLOC_031030 BX957257.1 non-coding upstream 650087 23768377 ~ 23770557 (-)

Expression


Co-expression Network