XLOC_031018 (si:dkeyp-20g2.1)


Basic Information

Item Value
gene id XLOC_031018
gene name si:dkeyp-20g2.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 23457112 ~ 23485308 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060264
TCAGGCCTCGCTTTCTGAGCTACAGCAGCAGCGAGACAGAGATCTGAGCCACCTAAGGGAAGCTCTGTCACACAGCAGGGAGGAGCTGGAGGCATCAGAATCAAGCCGAATGGAGACACTGAGGCACTGTGAAGAACAAGAGGGGACCATCGCGGAGCTCCGCACTGAGGCCCAGAGACTCCAGCAGCAGTGTGACTCAGTTTTACAAAGGGTATCAGAAGTTGAAAGTGTGTGTGCAGAGAAGCTCAGGGACGTGGAGGCTCAACTCAACACGGCGAGGAGAGAGCACACCAAAGCAGtgGTAGCTTTGAGGCAAGTTCAGAGGCaggtggagagagagaaagaacagATGAAAGAAGccgagagagagagaacagaacacacacacagacagatcaCACATCTGCAGAAACAGCTGAAAGACAAGGACAAAGACTGCAACCTTCTCCTGGCAGTGGTTCAGGAGCAGGGTttgatgaatgaatataaaagaCTGAGAAGATCTGCAAAAACCGAGACCCTGAAACAAACCCAACCTTGTAAATCTGAAAGTAAAAACCCGACACCTGAAAGTTTGCTGGGGGCTCTGCAAGCTCTTAGTGCCGCAGTGATGGGCAGCTCAGAGGAAGATGATGATGAGGAGGGTCAGGCCTTCACCGAGACTCAAACACCCTCTTGTGCTGACATGCATAAAGAATAGTGCTGAACACACCAATCAATTCCCCCTCACACACACTCGCTGTCTGTACAGCTCCTCCCGTGGGCTTTCATTCctgttttataatttaataaaaagagCTTTTTGTCAA
>TCONS_00060265
ATGGATATGCGGAGATCAGAAAGACTGAACGCGCCGGCGGACTTTATGAAAGCTGCTGAAGCAGCATCTGTCTGCGATCCCACTCCTTCTCTGATGACTCCTGCTCAGTTCACTGGTGGTCCTGTGGTCTGCTCCACAAGTTCACAGAACACACCTGCACCTTTCAGAGCTACACCTGCTTCAAAGTTCAGTGTGGAGGGTCTCGGTTTGACAGACACTGCTGCAGCTGAAGCATGGCATCTCAAACACTATAATGAGAAAATAATACAGCAGCGCTCTGACCACAGATTGCCAGAAGATGAGAGATTCAGCTCAAGGCCTCCGCTGCAGGAGGTGGAAAGGTTAAAAGAAGACAGGGAGATGATGAGAGGCGAGATGGAGCGTCTGAAAGGAAGAGTGGAGTGTTTGAGAGAGCAGATCAGAGATCAACAAAGCCAAATAAATAGacaGAGGATAGAGTGTGATGAGCTACGTGGTGAACTGAAGAGTTGCAAGACTGAACTCAGTATGAGCAAAGACCAGctTTTAAACCTGAAAGGGGAGTATGAAGTAGAATATCAGCGTCTGGAGAAAAAGTTACAGGACTCAAAGCAGGAGATTGGGAAACTGCAGCAAAAACTAGACACACAGAACATGATGACGGATACTGTACAGGAAGTGACCTCACTGAAGACCCAATTACAAGAAGTAATTTCAGAGAGAGATGAGCTGAGAAATCAGCTGAGTGTCCTGAACAGCTCATTGCTGGAACAGTCAGAGAGTGTGCAGAAACTGCGCACATACATTGGCAGCAACATCCCAGAGAAAAAAGAAGAGGAAGAGCTTAGACGCCAGATACAGcaTTTGGAGAAGGAAAAGGAAGCCATGTCTCTATCTGTCCAACTGCTGAATGTCAGAGTGAACGCAGCCAATGACATTCTAGCCATTCAGGAGAAAGAGCTAGGTGAACAGGTGCAGATGGACCCGTTGTGCTCCGGCAGTAAAGCTGGGCAGATGTTGAGTGTTTGGAGACAAAAGGTCTTTGTTctgcttgttaaactgcaaacCCAAGACTTACAACTCCACACGGAGAAAACACAGCTACATGACATGgTTTCCTCATTGCAGCAGGAGGTAGAATCTTTGCAGTCACAGAACAGTGTCCTTCAGCACCACATAGAGGACAAAAGCGCTCGGTTAGAGTTACAGCATGTACACACACAGGGAATACAGCAGCAGTTGGAGAGTGTTCTGCTGGAGAACATTCAGCTGAAGGAGCGCAATAAGAGCAGCGAGGCATCACTGAATCATATCAGTGAAACAGCAcacagAGTGATGTCAGCCGTGGAATTAAAGGCAGGTCAGATGGAAGCAGTTCAGTCCAGTGTAAGTCAGCTGAACCACAGACTCGCCTTTGCCGCCAAGCGTCTGGACACAGTACATGGGCTGCTGTTGAGAAAAGAAGCTCTGTGGAGAACCAAGCAAGCTACAAGATGTCCAGAGCCTGCAGTGTTGGAGAGCTTTATTAATAGTCTCAAAGCTGAGGTGGAGATGTTGAGCACAGAGAGGGACACGCTCGCACAGGAGCTCAAACGAACACCAGAGCTCATTCAGGCCTCGCTTTCTGAGCTACAGCAGCAGCGAGACAGAGATCTGAGCCACCTAAGGGAAGCTCTGTCACACAGCAGGGAGGAGCTGGAGGCATCAGAATCAAGCCGAATGGAGACACTGAGGCACTGTGAAGAACAAGAGGGGACCATCGCGGAGCTCCGCACTGAGGCCCAGAGACTCCAGCAGCAGTGTGACTCAGTTTTACAAAGGGTATCAGAAGTTGAAAGTGTGTGTGCAGAGAAGCTCAGGGACGTGGAGGCTCAACTCAACACGGCGAGGAGAGAGCACACCAAAGCAGtgGTAGCTTTGAGGCAAGTTCAGAGGCaggtggagagagagaaagaacagATGAAAGAAGccgagagagagagaacagaacacacacacagacagatcaCACATCTGCAGAAACAGCTGAAAGACAAGGACAAAGACTGCAACCTTCTCCTGGCAGTGGTTCAGGAGCAGGGTttgatgaatgaatataaaagaCTGAGAAGATCTGCAAAAACCGAGACCCTGAAACAAACCCAACCTTGTAAATCTGAAAGTAAAAACCCGACACCTGAAAGTTTGCTGGGGGCTCTGCAAGCTCTTAGTGCCGCAGTGATGGGCAGCTCAGAGGAAGATGATGATGAGGAGGGTCAGGCCTTCACCGAGACTCAAACACCCTCTTGTGCTGACATGCATAAAGAATAG
>TCONS_00060266
GGAAGAGCTTAGACGCCAGATACAGcaTTTGGAGAAGGAAAAGGAAGCCATGTCTCTATCTGTCCAACTGCTGAATGTCAGAGTGAACGCAGCCAATGACATTCTAGCCATTCAGGAGAAAGAGCTAGGTGAACAGGTGCAGATGGACCCGTTGTGCTCCGGCAGTAAAGCTGGGCAGATGTTGAGTGTTTGGAGACAAAAGGTCTTTGTTctgcttgttaaactgcaaacCCAAGACTTACAACTCCACACGGAGAAAACACAGCTACATGACATGgTTTCCTCATTGCAGCAGGAGGTAGAATCTTTGCAGTCACAGAACAGTGTCCTTCAGCACCACATAGAGGACAAAAGCGCTCGGTTAGAGTTACAGCATGTACACACACAGGGAATACAGCAGCAGTTGGAGAGTGTTCTGCTGGAGAACATTCAGCTGAAGGAGCGCAATAAGAGCAGCGAGGCATCACTGAATCATATCAGTGAAACAGCAcacagAGTGATGTCAGCCGTGGAATTAAAGGCAGGTCAGATGGAAGCAGTTCAGTCCAGTGTAAGTCAGCTGAA
>TCONS_00060267
GTCATGACAACTGCACGCACAGCTTTGAACTCAACGGCGGGGAGAACGAGCACTTTGCAAAACAATGACTAAAAAATCATCAAAGAATCGGATTCGAGCATTTTACACGTTTATGTAGGACCGCTTGTGTGACTTTCAGTGGTTATCATGGATATGCGGAGATCAGAAAGACTGAACGCGCCGGCGGACTTTATGAAAGCTGCTGAAGCAGCATCTGTCTGCGATCCCACTCCTTCTCTGATGACTCCTGCTCAGTTCACTGGTGGTCCTGTGGTCTGCTCCACAAGTTCACAGAACACACCTGCACCTTTCAGAGCTACACCTGCTTCAAAGTTCAGTGTGGAGGGTCTCGGTTTGACAGACACTGCTGCAGCTGAAGCATGGCATCTCAAACACTATAATGAGAAAATAATACAGCAGCGCTCTGACCACAGATTGCCAGAAGATGAGAGATTCAGCTCAAGGCCTCCGCTGCAGGAGGTGGAAAGGTTAAAAGAAGACAGGGAGATGATGAGAGGCGAGATGGAGCGTCTGAAAGGAAGAGTGGAGTGTTTGAGAGAGCAGATCAGAGATCAACAAAGCCAAATAAATAGacaGAGGATAGAGTGTGATGAGCTACGTGGTGAACTGAAGAGTTGCAAGACTGAACTCAGTATGAGCAAAGACCAG

Function

symbol description
si:dkeyp-20g2.1 Predicted to be involved in protein export from nucleus. Predicted to act upstream of or within cell differentiation. Predicted to be located in cytoplasm and nucleus. Predicted to be active in centriole.

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-537 Predicted to be involved in protein export from nucleus. Predicted to act upstream of or within cell differentiation. Predicted to be located in cytoplasm and nucleus. Predicted to be active in centriole. Orthologous to human CCHCR1 (coiled-coil alpha-helical rod protein 1).

Ensembl:

ensembl_id ENSDARG00000092464 ENSDARG00000093389 ENSDARG00000094279

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060264 False 809 mRNA 0.50 6 23457112 23464970
TCONS_00060265 False 2289 mRNA 0.49 19 23457221 23485161
TCONS_00060266 False 564 mRNA 0.48 6 23468045 23473312
TCONS_00060267 True 669 mRNA 0.48 4 23479562 23485308

Neighbor

gene id symbol gene type direction distance location
XLOC_031017 NA coding downstream 878 23446244 ~ 23456234 (-)
XLOC_031016 gria3a coding downstream 27884 23353570 ~ 23429228 (-)
XLOC_031015 CT025748.1 coding downstream 115489 23331153 ~ 23341623 (-)
XLOC_031014 nlgn3b coding downstream 139635 23283890 ~ 23317477 (-)
XLOC_031013 plp1b coding downstream 177014 23268121 ~ 23280098 (-)
XLOC_031019 stag2a coding upstream 2747 23488055 ~ 23517747 (-)
XLOC_031020 acsl4b coding upstream 33091 23518399 ~ 23583446 (-)
XLOC_031021 fam76b coding upstream 99907 23585215 ~ 23596339 (-)
XLOC_031022 mtmr2 coding upstream 122718 23608026 ~ 23619911 (-)
XLOC_031023 AL929305.2 coding upstream 137409 23622717 ~ 23647499 (-)
XLOC_031012 BX640521.1 non-coding downstream 234293 23222701 ~ 23222819 (-)
XLOC_031008 NA non-coding downstream 482471 22956895 ~ 22974641 (-)
XLOC_031001 NA non-coding downstream 947048 22506445 ~ 22510064 (-)
XLOC_031029 BX957257.2 non-coding upstream 272625 23757933 ~ 23758587 (-)
XLOC_031030 BX957257.1 non-coding upstream 283069 23768377 ~ 23770557 (-)
XLOC_031041 NA non-coding upstream 591317 24076625 ~ 24086136 (-)
XLOC_031051 BX119902.1 non-coding upstream 767151 24252459 ~ 24259292 (-)
XLOC_031053 BX119902.3 non-coding upstream 805335 24290643 ~ 24292159 (-)

Expression


Co-expression Network