XLOC_031026 (gbgt1l1)


Basic Information

Item Value
gene id XLOC_031026
gene name gbgt1l1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 23702295 ~ 23715861 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060277
TACAGTCGGACGGATGTTGTTACTTTGACACCATGGCTGGCCCCAGTTGTTTGGACGGGAACCTTTGACTCCAAACTGATTGACTCTATCTACAAACATCAAAACATCACTGTAGCGACCACAGTCTTCGCCCTGGGaaaATACACGCGTTTTCTCAAAGATTTTCTGGAGTCAGCGGAGGAGCATTACTTTGATGGATTTCGAGTCCATTATTACCTGTTCACGGATCAGCCTGAAGCAGTTCCTGAAGTAAAGATGGGTGAAAACCATCGTTTGACAGTCAGAAAGGTCCCAAGTTTGGACCGATGGCAGGACATCAGTATGGGCAGGATGGAGATACTGGAAAAACTAATAGCGGATGAACTGATGCATGAAGCCAACTATATATTCTGCCTTGACGTGGATACAAAGTTCTATGGCAGCTGGGGATCAGAGACTTTGGGTAATCTGGTAGGTGTCATTCACCCTTGGTTTTTTGATTATCCAAGGGAATCATTTACATACGAGCGAAGACCAGAGTCTAAAGCATTCATTGCGATTGGGGAAGGTGATTATTATTACACTGCTGCCGCATTTGGTGGCACATTAGAGGAAATACATCGTCTCACCAAAACCTGCCGTGAGCAGCTGAACGCTGATCATGAAAACTCCATTGAGGCAATATGGCATGAGGAGTCTCACTTGAACAAGTATTTCCTTTACAACAAACCCACTAAGCTGCTGTCACCTGAGTATCTGTGGCGGGACATCAACATAAGTGCAGGACAAATAAGAATTGTTCGCTTCTCTCATGTGGCTAAAAACAATGCAGAGGTTCGTCCAAACTTGTAGCATATTTCAGGCTGTTTACATCCACGTCAGGAGGTTCATGTTTCTCACAAAAGCATCACCTTAATCATTTTGAGACACAAACTGGTCAAATCAATCatgattgtgttttttaattGTCTGTTTACATTTAAATCTTGCATACATTACTGAATATGTCTGATATCTGAATTCATCTAAAACTTACTAAATGCTGATTAATAGTGTCATGACGAATTTCAAATTTATGACTAAGTCAGATGAGCCATGTGgataatatgttaaaatataatgttGTGTAAATAATGTGAGCTGTGAATGAGTAGtatttaatgatatttaaagCAATCACTGCCAATCTTAAATTAAGTGATATGTTATGTCAAAATACAGATATGCGTATAATATTTATTTGACAATTATTATTTGCTTTactaaaaaaaatgtgcatattaaaaaaacaacactaacgcaagaaacaaataacaataaatatttatattgtctttttgtaagcatgAACTATGGTTTTATGCTTTCAACTAGGTTTTGGGTTGTAATTTTAAGATGTAATTAAAATTCATTTACCTCcatcaaaaaaattaataaatgaaaccaCTTTAATGGTAAATGCAGACTGTGGT
>TCONS_00060278
GTCTTCATGTACGCCCCACCCTCGCCTGACTGTATTTGACTTTGAAATCTGCAGCATGACAGCATGCTCTTCCATGTCCGATATTTTCACTCTCATTTTTCAGATCAATTTATCAAGTGAATTCGGACACACAGCCCAGCTGATACGGCAATAATGCGAATCCGTCAGAGCTCAAATTTCTTTCTTCTTGGGGTGACTGCTGGCTTGACACTGACTGGgcTGATTTTTTTTGGCTACACCACTATATGGTTCAGAAGTCAACAAATGGACAACTTTGGTCGGACGGATGTTGTTACTTTGACACCATGGCTGGCCCCAGTTGTTTGGACGGGAACCTTTGACTCCAAACTGATTGACTCTATCTACAAACATCAAAACATCACTGTAGCGACCACAGTCTTCGCCCTGGGaaaATACACGCGTTTTCTCAAAGATTTTCTGGAGTCAGCGGAGGAGCATTACTTTGATGGATTTCGAGTCCATTATTACCTGTTCACGGATCAGCCTGAAGCAGTTCCTGAAGTAAAGATGGGTGAAAACCATCGTTTGACAGTCAGAAAGGTCCCAAGTTTGGACCGATGGCAGGACATCAGTATGGGCAGGATGGAGATACTGGAAAAACTAATAGCGGATGAACTGATGCATGAAGCCAACTATATATTCTGCCTTGACGTGGATACAAAGTTCTATGGCAGCTGGGGATCAGAGACTTTGGGTAATCTGGTAGGTGTCATTCACCCTTGGTTTTTTGATTATCCAAGGGAATCATTTACATACGAGCGAAGACCAGAGTCTAAAGCATTCATTGCGATTGGGGAAGGTGATTATTATTACACTGCTGCCGCATTTGGTGGCACATTAGAGGAAATACATCGTCTCACCAAAACCTGCCGTGAGCAGCTGAACGCTGATCATGAAAACTCCATTGAGGCAATATGGCATGAGGAGTCTCACTTGAACAAGTATTTCCTTTACAACAAACCCACTAAGCTGCTGTCACCTGAGTATCTGTGGCGGGACATCAACATAAGTGCAGGACAAATAAGAATTGTTCGCTTCTCTCATGTGGCTAAAAACAATGCAGAGGTTCGTCCAAACTTGTAGCATATTTCAGGCTGTTTACATCCACGTCAGGAGGTTCATGTTTCTCACAAAAGCATCACCTTAATCATTTTGAGACACAAACTGGTCAAATCAATCatgattgtgttttttaattGTCTGTTTACATTTAAATCTTGCATACATTACTGAATATGTCTGATATCTGAATTCATCTAAAACTTACTAAATGCTGATTAATAGTGTCATGACGAATTTCAAATTTATGACTAAGTCAGATGAGCCATGTGgataatatgttaaaatataatgttGTGTAAATAATGTGAGCTGTGAATGAGTAGtatttaatgatatttaaagCAATCACTGCCAATCTTAAATTAAGTGATATGTTATGTCAAAATACAGATATGCGTATAATATTTATTTGACAATTATTATTTGCTTTactaaaaaaaatgtgcatattaaaaaaacaacactaacgcaagaaacaaataacaataaatatttatattgtctttttgtaagcatgAACTATGGTTTTATGCTTTCAACTAGGTTTTGGGTTGTAATTTTAAGATGTAATTAAAATTCATTTACCTCcatcaaaaaaattaataaatgaaaccaCTTTAATGGTAAATGCAGACTGTGGT
>TCONS_00060279
GGTGGTTTGGTCCACTGCAGACTGCAGCGAGACGCTCCTCCTCATCATCTCAAGCAGAGAGAACAATCGACTGTTCAAATCCTGAATGTTGCTGATTCCTGGCAGAAGCGTGCAGCACAAAAACATTATCAATTTATCAAGTGAATTCGGACACACAGCCCAGCTGATACGGCAATAATGCGAATCCGTCAGAGCTCAAATTTCTTTCTTCTTGGGGTGACTGCTGGCTTGACACTGACTGGgcTGATTTTTTTTGGCTACACCACTATATGGTTCAGAAGTCAACAAATGGACAACTTTGGTCGGACGGATGTTGTTACTTTGACACCATGGCTGGCCCCAGTTGTTTGGACGGGAACCTTTGACTCCAAACTGATTGACTCTATCTACAAACATCAAAACATCACTGTAGCGACCACAGTCTTCGCCCTGGGaaaATACACGCGTTTTCTCAAAGATTTTCTGGAGTCAGCGGAGGAGCATTACTTTGATGGATTTCGAGTCCATTATTACCTGTTCACGGATCAGCCTGAAGCAGTTCCTGAAGTAAAGATGGGTGAAAACCATCGTTTGACAGTCAGAAAGGTCCCAAGTTTGGACCGATGGCAGGACATCAGTATGGGCAGGATGGAGATACTGGAAAAACTAATAGCGGATGAACTGATGCATGAAGCCAACTATATATTCTGCCTTGACGTGGATACAAAGTTCTATGGCAGCTGGGGATCAGAGACTTTGGGTAATCTGGTAGGTGTCATTCACCCTTGGTTTTTTGATTATCCAAGGGAATCATTTACATACGAGCGAAGACCAGAGTCTAAAGCATTCATTGCGATTGGGGAAGGTGATTATTATTACACTGCTGCCGCATTTGGTGGCACATTAGAGGAAATACATCGTCTCACCAAAACCTGCCGTGAGCAGCTGAACGCTGATCATGAAAACTCCATTGAGGCAATATGGCATGAGGAGTCTCACTTGAACAAGTATTTCCTTTACAACAAACCCACTAAGCTGCTGTCACCTGAGTATCTGTGGCGGGACATCAACATAAGTGCAGGACAAATAAGAATTGTTCGCTTCTCTCATGTGGCTAAAAACAATGCAGAGGTTCGTCCAAACTTGTAGCATATTTCAGGCTGTTTACATCCACGTCAGGAGGTTCATGTTTCTCACAAAAGCATCACCTTAATCATTTTGAGACACAAACTGGTCAAATCAATCatgattgtgttttttaattGTCTGTTTACATTTAAATCTTGCATACATTACTGAATATGTCTGATATCTGAATTCATCTAAAACTTACTAAATGCTGATTAATAGTGTCATGACGAATTTCAAATTTATGACTAAGTCAGATGAGCCATGTGgataatatgttaaaatataatgttGTGTAAATAATGTGAGCTGTGAATGAGTAGtatttaatgatatttaaagCAATCACTGCCAATCTTAAATTAAGTGATATGTTATGTCAAAATACAGATATGCGTATAATATTTATTTGACAATTATTATTTGCTTTactaaaaaaaatgtgcatattaaaaaaacaacactaacgcaagaaacaaataacaataaatatttatattgtctttttgtaagcatgAACTATGGTTTTATGCTTTCAACTAGGTTTTGGGTTGTAATTTTAAGATGTAATTAAAATTCATTTACCTCcatcaaaaaaattaataaatgaaaccaCTTTAATGGTAAATGCAGACTGTGGT
>TCONS_00060280
ACTGTATTTGACTTTGAAATCTGCAGCATGACAGCATGCTCTTCCATGTCCGATATTTTCACTCTCATTTTTCAGATCAATTTATCAAGTGAATTCGGACACACAGCCCAGCTGATACGGCAATAATGCGAATCCGTCAGAGCTCAAATTTCTTTCTTCTTGGGGTGACTGCTGGCTTGACACTGACTGGgcTGATTTTTTTTGGCTACACCACTATATGGTTCAGAAGTCAACAAATGGACAACTTTGGaacttccaattcagttgcctatgggagaattgactataaatggcagaaaatgtgtgttcatgactatacataaaaggtagaataatatattaagaaaatatctgtttgcaacatcaagcagcataacaagttGTTTTTAATGCCCAAATCGTTGGAAGTGAAAAAGACGGAAGTCGagatattacaaaatattccaaTTGAAGCACCAACTGTCGGACGGATGTTGTTACTTTGACACCATGGCTGGCCCCAGTTGTTTGGACGGGAACCTTTGACTCCAAACTGATTGACTCTATCTACAAACATCAAAACATCACTGTAGCGACCACAGTCTTCGCCCTGGGaaaATACACGCGTTTTCTCAAAGATTTTCTGGAGTCAGCGGAGGAGCATTACTTTGATGGATTTCGAGTCCATTATTACCTGTTCACGGATCAGCCTGAAGCAGTTCCTGAAGTAAAGATGGGTGAAAACCATCGTTTGACAGTCAGAAAGG

Function

symbol description
gbgt1l1 Predicted to enable glycosyltransferase activity. Predicted to be involved in lipid glycosylation. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and vesicle.

GO:

id name namespace
GO:0030259 lipid glycosylation biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0031982 vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1117 Predicted to enable glycosyltransferase activity. Predicted to be involved in lipid glycosylation. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and vesicle.

Ensembl:

ensembl_id ENSDARG00000025275

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060277 False 1451 mRNA 0.37 2 23702295 23705828
TCONS_00060278 False 1724 mRNA 0.38 5 23702295 23715027
TCONS_00060279 False 1748 mRNA 0.39 6 23702295 23715861
TCONS_00060280 True 746 nonsense_mediated_decay 0.41 6 23703457 23714999

Neighbor

gene id symbol gene type direction distance location
XLOC_031025 rnf128a coding downstream 5369 23677420 ~ 23696926 (-)
XLOC_031024 tbc1d8b coding downstream 27073 23641833 ~ 23675222 (-)
XLOC_031023 AL929305.2 coding downstream 54796 23622717 ~ 23647499 (-)
XLOC_031022 mtmr2 coding downstream 82384 23608026 ~ 23619911 (-)
XLOC_031021 fam76b coding downstream 105956 23585215 ~ 23596339 (-)
XLOC_031027 si:dkey-110k5.10 coding upstream 5654 23721515 ~ 23729590 (-)
XLOC_031028 gbgt1l2 coding upstream 22306 23738167 ~ 23749348 (-)
XLOC_031029 BX957257.2 coding upstream 42072 23757933 ~ 23758587 (-)
XLOC_031030 BX957257.1 coding upstream 52516 23768377 ~ 23770557 (-)
XLOC_031031 si:ch211-287c22.1 coding upstream 60819 23776680 ~ 23783739 (-)
XLOC_031017 NA non-coding downstream 246061 23446244 ~ 23456234 (-)
XLOC_031015 CT025748.1 non-coding downstream 360672 23331153 ~ 23341623 (-)
XLOC_031012 BX640521.1 non-coding downstream 479476 23222701 ~ 23222819 (-)
XLOC_031008 NA non-coding downstream 727654 22956895 ~ 22974641 (-)
XLOC_031001 NA non-coding downstream 1192231 22506445 ~ 22510064 (-)
XLOC_031041 NA non-coding upstream 360764 24076625 ~ 24086136 (-)
XLOC_031051 BX119902.1 non-coding upstream 536598 24252459 ~ 24259292 (-)
XLOC_031053 BX119902.3 non-coding upstream 574782 24290643 ~ 24292159 (-)

Expression


Co-expression Network