XLOC_031027 (si:dkey-110k5.10)


Basic Information

Item Value
gene id XLOC_031027
gene name si:dkey-110k5.10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 23721515 ~ 23729590 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060281
TCGGGCAGATGTTGTTTCTTTATCACCATGGCTAGCCCCTATCATTTGGGAGGGAACCTTTAACCCCACGCTGATTGATTCTATCTACAAGCAACATAACATCACCATTGCCACCACTGTCTTCGCTTTGGGAAAATACACGCGTTTTCTCAAAGATTTTCTGGAGTCAGCGGAGGAGCATTACTTTGTTGGATTTGGAGTCCATTATTACCTGTTCACGGATCAGCCTGAAGCAGTTCCTGAAGTAAAGATGGGTAAAAACCATCGTTTGACAGTCAGAAAGGTCCCAAGTTTGGACCGATGGCAGGACATAAGTATGGGCAGGATGGAGATACTGGAAAAACTAATAGCGGATGAACTGATGCATGAAGCCAACTATATATTCTGCCTTGACGTGGATACGAAGTTCTATGGCCGCTGGGGATCAGAGACTTTGGGTAATCTGGTAGGTGTGATTCACCCTTGGCTTTTTGATTATCCAAGGGAATCATTTACATACGAGCGAAGACCAGAGTCTAAAGCATTTATTCCGGTTGGGGAAGGGGATTATTATTACACTGCTGCTGCATTTGGTGGCACATTAGAGGAAATACATCGTCTCACCAAAACCTGCCGCGAGCAGCTGAACGCTGATCATGAAAACTCCATTGAGGCAATATGGCATGAGGAGTCTCACTTAAACAAGTATTTCCTTTACAACAAACCCACTAAGCTGCTGTCACCTGAGTATCTGTGGCGGGACATCAACATAAGTGCAGGACAAATAAAAATTATTCGCTTCTCTCATGTGGCTAAAAACAATGCAGAGGTTCGTCCAAATGCATGA
>TCONS_00060282
AATTCTTGCTATATGCACATATACTCAGTATACCTACTTTTTTCCGCAAGCTGTTTGggtaaaagctttttttttagctGTGTTTTAAACACAGTTGGAATCTGGTCATATTTAGATAGAGTGGAtgtcaaaaaaatgaaatatgatttgtttttatttcaagctACATTCAATCGGGCAGATGTTGTTTCTTTATCACCATGGCTAGCCCCTATCATTTGGGAGGGAACCTTTAACCCCACGCTGATTGATTCTATCTACAAGCAACATAACATCACCATTGCCACCACTGTCTTCGCTTTGGGAAAATACACGCGTTTTCTCAAAGATTTTCTGGAGTCAGCGGAGGAGCATTACTTTGTTGGATTTGGAGTCCATTATTACCTGTTCACGGATCAGCCTGAAGCAGTTCCTGAAGTAAAGATGGGTAAAAACCATCGTTTGACAGTCAGAAAGGTCCCAAGTTTGGACCGATGGCAGGACATAAGTATGGGCAGGATGGAGATACTGGAAAAACTAATAGCGGATGAACTGATGCATGAAGCCAACTATATATTCTGCCTTGACGTGGATACGAAGTTCTATGGCCGCTGGGGATCAGAGACTTTGGGTAATCTGGTAGGTGTGATTCACCCTTGGCTTTTTGATTATCCAAGGGAATCATTTACATACGAGCGAAGACCAGAGTCTAAAGCATTTATTCCGGTTGGGGAAGGGGATTATTATTACACTGCTGCTGCATTTGGTGGCACATTAGAGGAAATACATCGTCTCACCAAAACCTGCCGCGAGCAGCTGAACGCTGATCATGAAAACTCCATTGAGGCAATATGGCATGAGGAGTCTCACTTAAACAAGTATTTCCTTTACAACAAACCCACTAAGCTGCTGTCACCTGAGTATCTGTGGCGGGACATCAACATAAGTGCAGGACAAATAAAAATTATTCGCTTCTCTCATGTGGCTAAAAACAATGCAGAGGTTCGTCCAAATGCATGA

Function

GO:

id name namespace
GO:0030259 lipid glycosylation biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0031982 vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060531-70 Predicted to enable glycosyltransferase activity. Predicted to be involved in lipid glycosylation. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and vesicle. Orthologous to human GBGT1 (globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group)).

Ensembl:

ensembl_id ENSDARG00000011283

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060281 False 826 mRNA 0.44 2 23721515 23725480
TCONS_00060282 True 999 mRNA 0.42 3 23721515 23729590

Neighbor

gene id symbol gene type direction distance location
XLOC_031026 gbgt1l1 coding downstream 5654 23702295 ~ 23715861 (-)
XLOC_031025 rnf128a coding downstream 24589 23677420 ~ 23696926 (-)
XLOC_031024 tbc1d8b coding downstream 46293 23641833 ~ 23675222 (-)
XLOC_031023 AL929305.2 coding downstream 74016 23622717 ~ 23647499 (-)
XLOC_031022 mtmr2 coding downstream 101604 23608026 ~ 23619911 (-)
XLOC_031028 gbgt1l2 coding upstream 8577 23738167 ~ 23749348 (-)
XLOC_031029 BX957257.2 coding upstream 28343 23757933 ~ 23758587 (-)
XLOC_031030 BX957257.1 coding upstream 38787 23768377 ~ 23770557 (-)
XLOC_031031 si:ch211-287c22.1 coding upstream 47090 23776680 ~ 23783739 (-)
XLOC_031032 gbgt1l4 coding upstream 59002 23788592 ~ 23805387 (-)
XLOC_031017 NA non-coding downstream 265281 23446244 ~ 23456234 (-)
XLOC_031015 CT025748.1 non-coding downstream 379892 23331153 ~ 23341623 (-)
XLOC_031012 BX640521.1 non-coding downstream 498696 23222701 ~ 23222819 (-)
XLOC_031008 NA non-coding downstream 746874 22956895 ~ 22974641 (-)
XLOC_031001 NA non-coding downstream 1211451 22506445 ~ 22510064 (-)
XLOC_031041 NA non-coding upstream 347035 24076625 ~ 24086136 (-)
XLOC_031051 BX119902.1 non-coding upstream 522869 24252459 ~ 24259292 (-)
XLOC_031053 BX119902.3 non-coding upstream 561053 24290643 ~ 24292159 (-)

Expression


Co-expression Network