XLOC_031028 (gbgt1l2)


Basic Information

Item Value
gene id XLOC_031028
gene name gbgt1l2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 23738167 ~ 23749348 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060283
AATAGAAGACGACCAAGTTcacctgtaaaataaacaaagatgatgcctttaaaaaaaagtacctGATTGTTCTGGTGTTCATTGGCAGCTTTGAGTGGgcTCATATATTTGGGCtacacctcctcctcctccattgGGTGAGTGCTTAATAATTAGTTCTTTAAATGGGACATAAATACCCGGAAAGTGCTGGCTTGCGGTTGCCAGAAGGGCTTTCATACAATCAGTCCAGCGTAGTGGGCCCAGATGGCAAAGTTGCTCATGTAACACCATGGTTAGCCCCAATTGTTTGGGAAGGAACTTTTGATCCCACACTGATTGATCCGGTctacaaacaacaaaacatcacTATAGCGACTACAGTCTTCGCTCTCGGAAAATACACAGTATTTCTCAAAGATTTCATGGAGTCTGCAGAGCAGAATTACTTTGTTGGATTTCATGTGCACTATTATATCTTCACCGACCATCCAGAAGAGGTTCCTGATGTGAAACTGGGTGAAGGACATCAGTTGACGGTGATGACAGTTGGTAGTTCTAACAGATGGCAGGAGATGACGCTGCGGAGAATGGAGAGGCTGGAGAAACTAATAGAAAGTCGATTGGTGAATGAAGCTGACTATGTTTTCAGCCTTGATGTAGATTCAAAGTTCTACGCCCGCTGGGGTGTAGAGACTTTGGGTCGTCTTGTAGGCGCAATTCATCCTGGTTACTTTAAAGCACAACGTGAGCATTTACCATATGAGCGAAGGCCTGAGTCTCAAGCGTTTATCCCTTATTCTGATGGTGATTATTATTATGGTGGAGCTGTGCTTGGTGGTGCAGTGAAAGATGTATATGAGGTTGCTAAAACCTGCAGAGAGCAGCTGGACATTGATGCAGCTAAATCTATTGAGGCAGCATGGCAGGAGGAGTCCCATTTGAACAAGTACTTCCTTTATAACAAACCAAGCAAACTGCTTTCACCCGAGTACCTGTGGCAAGCCCACTTACCGCAGCCAAAGGAGGTCAAAATCATTCGTTCTTGTCATGTTATTAAAAATTATGCTGCTGTTCGCCCAAACCCATagtttactgaaatgcaacagattttatgctttatattttaaactggtgtaattttaatgtttttaaagtctTTAGCAAAAACTGCAGCCAAATATATTTCTCATACATCAACATCTGAAGTGACCATTTGCTGCTGAAAAAAAGCCATGTAGATAAATGTATAGTGTtgatttaaaacagttttatggTTAAAAAGATTCAGAAACTATTATTGTTATACCCCAATACCTTATCAAAACTAACATTTTCCTTCAgtaaacttaaataaaacataatttgtcTACTAATTATAAACTCTGATTAAAACTCAGTTACAGGTACCTTTGCATATGTGAATTTAAATATGTgcatttaaatatacagtatatcctAAAAACCATGAACTTTTGTCGGAGGTGATGTACAATTGAAATCAGAATt

Function

symbol description
gbgt1l2 Predicted to enable glycosyltransferase activity. Predicted to be involved in lipid glycosylation. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be active in Golgi apparatus and vesicle. Orthologous to human GBGT1 (globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group)).

GO:

id name namespace
GO:0030259 lipid glycosylation biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0031982 vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060531-71 Predicted to enable glycosyltransferase activity. Predicted to be involved in lipid glycosylation. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be active in Golgi apparatus and vesicle. Orthologous to human GBGT1 (globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group)).

Ensembl:

ensembl_id ENSDARG00000092718

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060283 True 1488 mRNA 0.39 6 23738167 23749348

Neighbor

gene id symbol gene type direction distance location
XLOC_031027 si:dkey-110k5.10 coding downstream 8577 23721515 ~ 23729590 (-)
XLOC_031026 gbgt1l1 coding downstream 22306 23702295 ~ 23715861 (-)
XLOC_031025 rnf128a coding downstream 41241 23677420 ~ 23696926 (-)
XLOC_031024 tbc1d8b coding downstream 62945 23641833 ~ 23675222 (-)
XLOC_031023 AL929305.2 coding downstream 90668 23622717 ~ 23647499 (-)
XLOC_031029 BX957257.2 coding upstream 8585 23757933 ~ 23758587 (-)
XLOC_031030 BX957257.1 coding upstream 19029 23768377 ~ 23770557 (-)
XLOC_031031 si:ch211-287c22.1 coding upstream 27332 23776680 ~ 23783739 (-)
XLOC_031032 gbgt1l4 coding upstream 39244 23788592 ~ 23805387 (-)
XLOC_031033 GBGT1 coding upstream 90422 23839770 ~ 23843636 (-)
XLOC_031017 NA non-coding downstream 281933 23446244 ~ 23456234 (-)
XLOC_031015 CT025748.1 non-coding downstream 396544 23331153 ~ 23341623 (-)
XLOC_031012 BX640521.1 non-coding downstream 515348 23222701 ~ 23222819 (-)
XLOC_031008 NA non-coding downstream 763526 22956895 ~ 22974641 (-)
XLOC_031001 NA non-coding downstream 1228103 22506445 ~ 22510064 (-)
XLOC_031041 NA non-coding upstream 327277 24076625 ~ 24086136 (-)
XLOC_031051 BX119902.1 non-coding upstream 503111 24252459 ~ 24259292 (-)
XLOC_031053 BX119902.3 non-coding upstream 541295 24290643 ~ 24292159 (-)

Expression


Co-expression Network