XLOC_031031 (si:ch211-287c22.1)


Basic Information

Item Value
gene id XLOC_031031
gene name si:ch211-287c22.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 23776680 ~ 23783739 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060286
TTCTCTGAACACCTGTCCTATTATGAATAGTGCCTTAATTCTGACAGAATTAAATTAGTTTAGTACAGTTAATAACCGAAGAATTGTTTGGTtgtctttttctattttatattcaatcttCAAAGTGAGCAAGGGCATAACAGGTGGAAAATAATGAAGCTTCAAAGCGTTAATGCATTTCTTATCATGTTCGCTGGCACCGTAGTAATTGGACTCTTTTATTTTGGCTTCACTTCCCCCTCATTAAGATATATAGAGCAAAGACTTTGCCTAAATAAAACTAAAAAGAGCCGGGAAAATGCTCTCTTGCAGTCGCCTCAAGGGTTCATATATAAGCAACCCAGTGTAGTGGGcccAGATGGGAAAGTTGGTCCTCTGACACCATGGTTAGCTCCAATTGTATCTGAAGGAAGTTTTGATCCCACACTGATTGATGCAATCTACAAACAACAGAACATTACAGTAGCAACCACCATTTTCGCTCTTGGAaaATACACCATTTTCCTAAAAGATTTCCTGGAGTCTGCAGAGCAACATTTTTTTGTTGGGTTTCGTGTGCACTATTATGTCTTCACTGATCATCCAGAGCAGGTTCCTGATGTGAAACTGGGTGAAGAACATGAACTGACGGTGATGACAGTCAATAGTTTAAGCAGATGGCAGGAGATGAGTTTGGGCAGGATGAAAAGGCTGGAGTTGCTGATTGAGAGTGGACTGGTCAATGATGCTGACTATCTTTTCAGTCTTGATGTGGATACAAAGTTCTACGGCCGCTGGGGAGCAGAGTCTTTGGGTGATCTTATAGGTGTGATACATGCATGGTTTTATTATACACCTCGTGAGCAATTCCCATATGAGCGAAGGCCTGAGTCTCAAGCGTTTGTCCCTTATTCTGAGGGTGATTATTATTATGGTGGAGCTGTGCTTGGTGGTTCAGTGAAGCAAGTATATCAGCTTGCTAAAACCTGTCGAGAGCAGCTGGACATTGATGCAGCTAAATCCATTGAGGCAGCATGGCAGGAGGAGTCCCATTTGAACAAGTACTTCATTTATAACAAACCCAGTAAACTGCTTTCACCCGAATATTCTTGGGATGATAAAAGAGGGACACCACGAGAGATGAAAATGGTTAGATTTTCTCAAGTTCCTAAAAACTATGATGAAGTTCGTCCAAACACATAAAAGCTTTTAAGTGAAGACTGTGTGAATCTTATTTTA

Function

GO:

id name namespace
GO:0030259 lipid glycosylation biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0031982 vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060531-59 Predicted to enable glycosyltransferase activity. Predicted to be involved in lipid glycosylation. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be active in Golgi apparatus and vesicle. Orthologous to human GBGT1 (globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group)).

Ensembl:

ensembl_id ENSDARG00000091944

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060286 True 1218 mRNA 0.41 7 23776680 23783739

Neighbor

gene id symbol gene type direction distance location
XLOC_031030 BX957257.1 coding downstream 6123 23768377 ~ 23770557 (-)
XLOC_031029 BX957257.2 coding downstream 18093 23757933 ~ 23758587 (-)
XLOC_031028 gbgt1l2 coding downstream 27332 23738167 ~ 23749348 (-)
XLOC_031027 si:dkey-110k5.10 coding downstream 47090 23721515 ~ 23729590 (-)
XLOC_031026 gbgt1l1 coding downstream 60819 23702295 ~ 23715861 (-)
XLOC_031032 gbgt1l4 coding upstream 4853 23788592 ~ 23805387 (-)
XLOC_031033 GBGT1 coding upstream 56031 23839770 ~ 23843636 (-)
XLOC_031034 gbgt1l3 coding upstream 65908 23849647 ~ 23855447 (-)
XLOC_031035 gbgt1l3 coding upstream 91057 23874796 ~ 23878809 (-)
XLOC_031036 arap1a coding upstream 104575 23888314 ~ 23909934 (-)
XLOC_031017 NA non-coding downstream 320446 23446244 ~ 23456234 (-)
XLOC_031015 CT025748.1 non-coding downstream 435057 23331153 ~ 23341623 (-)
XLOC_031012 BX640521.1 non-coding downstream 553861 23222701 ~ 23222819 (-)
XLOC_031041 NA non-coding upstream 292886 24076625 ~ 24086136 (-)
XLOC_031051 BX119902.1 non-coding upstream 468720 24252459 ~ 24259292 (-)
XLOC_031053 BX119902.3 non-coding upstream 506904 24290643 ~ 24292159 (-)
XLOC_031055 NA non-coding upstream 623614 24407353 ~ 24414457 (-)
XLOC_031056 BX088551.1 non-coding upstream 706136 24489875 ~ 24489974 (-)

Expression


Co-expression Network