XLOC_031032 (gbgt1l4)


Basic Information

Item Value
gene id XLOC_031032
gene name gbgt1l4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 23788592 ~ 23805387 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060287
AGAAGACGATCCAGTTCACCTGTCAAAATGAATGGAGACGATACCTTCAAAAAAAGAACGCGATTAAATCCAGTTATTCTGGTGTTCTTTGGCAGCTTAGTGAGTGGGCTCATATATTTGGGCTACACCTCCTCTTCCATCAGATTTAAAGTACAAAGATTCTGCTTCAAcataacaaagGAACACCAGGAAAGTGTTCTCTTGCAGTTGCCACAAGGGCTTTCATTCAATCAGCCCAGTGTAGTGGGacctGATGGCAAAATTGTACCTGTTACACCATGGTTAGCCCCAATTGTTTGGGAAGGAACTTTTGATCCCACATTGATTGATTCAGTCTACAAACAACAAAACGTCACTATAGCGACCACAGTCTTCGCTCTTGGAAAATATACAGTGTTTCTCAAAGAATTCCTGGAGTCTGCAGAGCAGAATTATTTTGTTGGATTTCATGTGCACTATTATATCTTCACCGATCATCCAGAAGAGGTTCCTGATGTGAAACTGGGTGAAGGACATCAGTTGACGGTGATGACAGTTGATAGTTCTAACAGATGGCAGGAGATGACATTGCGGAGAATGGAGAGGCTGGAGAAACTAATTGAGAGTCGATTGGTGAAGGAAGCTGACTATGTTTTCAGCCTTGACGTTGATACAAAGTTCTACGCCCGCTGGGGTGCAGAGACTTTGGGTCGTCTTGTAGGTGTGCTTCATCCTGGTTACTATCAAACACCACGTGAGCAATTCCCATATGAGCGAAGGCCTGAGTCTCAAGCGTTTATCCCTTATTCTGATGGTGATTATTATTATGGTGGAGCTGTGCTTGGTGGTGCAGTGAAAGATGTATATGAGGTTGCTAAGACCTGCAGAGAGCAGCTGGACATTGATGCAGCTAAATCCATTGAGGCAGCATGGCAAGAGGAGTCCCATTTGAACAAATACTTTGTTTATAACAAACCCAGTAAACTGCTTTCACCCGAGTACCTGTGGCAGGACTTCAAACCGCAGACAAATGAGGTCAAAATCATTCGCTTCTCTcaagttattaaaaattatgCTGCTGTTCGTCCAAACCCATAGTTTACTGAAACGTAACAgattttatgctttatattttaaactggtgtaattttaatgtttttgtagtCTTTAGCAAACGCTGTGGCCAAATATATTTCTCATAAGCTATACATCAACATCTGAAGTGACCATTTGCTGCTGAAAAGTGATTTAGATAAGTGTATAGTGTTGATTTAAAACGGTTGTATGATTAAGAAGATTCAAAAACTATTATTGTTAtactataataccttatcaaaaCTAGCATTTTCCTTCAGTAAACTTAAAATATAAGTTGTCTACTAATTATAAACTCTGATTACAGCTCAGTTACAGGTACTTTTGCATATatgaattttaaattattttacatacagtatattccAAAAATAATCATGATCTATGGTTCTTACTAAATGGAAATAACGAATCAAAAGTATAAACTTATTATTAGTTTGGGTTTCTTCAAGCATTGTGACAGTATGTGAACTGGTGTGatatattatgaattattaaattgATCATTTGCTAAAAA
>TCONS_00060288
ATTCTTAAAGAACAGTGGCTAATTCTGACAGAATAAAATTAGTGCAATAATTTAAAGATATTACTCTCTATTGCTGTCATCTTTGACATTCAATTCTCAAAGCGAATAAGGGTCTAATAGTTGGAATAATGAAActtcaaaacataaattcttCTCTTCTTTTGTTGGCGGGAGTTTCAATAGCTGGGCTCATATATTTGGGCTACACCTCCTCTTCCATCAGATTTAAAGTACAAAGATTCTGCTTCAAcataacaaagGAACACCAGGAAAGTGTTCTCTTGCAGTTGCCACAAGGGCTTTCATTCAATCAGCCCAGTGTAGTGGGacctGATGGCAAAATTGTACCTGTTACACCATGGTTAGCCCCAATTGTTTGGGAAGGAACTTTTGATCCCACATTGATTGATTCAGTCTACAAACAACAAAACGTCACTATAGCGACCACAGTCTTCGCTCTTGGAAAATATACAGTGTTTCTCAAAGAATTCCTGGAGTCTGCAGAGCAGAATTATTTTGTTGGATTTCATGTGCACTATTATATCTTCACCGATCATCCAGAAGAGGTTCCTGATGTGAAACTGGGTGAAGGACATCAGTTGACGGTGATGACAGTTGATAGTTCTAACAGATGGCAGGAGATGACATTGCGGAGAATGGAGAGGCTGGAGAAACTAATTGAGAGTCGATTGGTGAAGGAAGCTGACTATGTTTTCAGCCTTGACGTTGATACAAAGTTCTACGCCCGCTGGGGTGCAGAGACTTTGGGTCGTCTTGTAGGTGTGCTTCATCCTGGTTACTATCAAACACCACGTGAGCAATTCCCATATGAGCGAAGGCCTGAGTCTCAAGCGTTTATCCCTTATTCTGATGGTGATTATTATTATGGTGGAGCTGTGCTTGGTGGTGCAGTGAAAGATGTATATGAGGTTGCTAAGACCTGCAGAGAGCAGCTGGACATTGATGCAGCTAAATCCATTGAGGCAGCATGGCAAGAGGAGTCCCATTTGAACAAATACTTTGTTTATAACAAACCCAGTAAACTGCTTTCACCCGAGTACCTGTGGCAGGACTTCAAACCGCAGACAAATGAGGTCAAAATCATTCGCTTCTCTcaagttattaaaaattatgCTGCTGTTCGTCCAAACCCATAGTTTACTGAAACGTAACAgattttatgctttatattttaaactggtgtaattttaatgtttttgtagtCTTTAGCAAACGCTGTGGCCAAATATATTTCTCATAAGCTATACATCAACATCTGAAGTGACCATTTGCTGCTGAAAAGTGATTTAGATAAGTGTATAGTGTTGATTTAAAACGGTTGTATGATTAAGAAGATTCAAAAACTATTATTGTTAtactataataccttatcaaaaCTAGCATTTTCCTTCAGTAAACTTAAAATATAAGTTGTCTACTAATTATAAACTCTGATTACAGCTCAGTTACAGGTACTTTTGCATATatgaattttaaattattttacatacagtatattccAAAAATAATCATGATCTATGGTTCTTACTAAATGGAAATAACGAATCAAAAGTATAAACTTATTATTAGTTTGGGTTTCTTCAAGCATTGTGACAGTATGTGAACTGGTGTGatatattatgaattattaaattgATCATTTGCTAAAAA
>TCONS_00060289
ATAGAAGACGATCCAGTTCACCTGTCAAAATGAATGGAGACGATACCTTCAAAAAAAGAACGCGATTAAATCCAGTTATTCTGGTGTTCTTTGGCAGCTTAGTGAGTGGGCTCATATATTTGGGCTACACCTCCTCTTCCATCAGATTTAAAGTACAAAGATTCTGCTTCAAcataacaaagGAACACCAGGAAAGTGTTCTCTTGCAGTTGCCACAAGGATATACAGTGTTTCTCAAAGAATTCCTGGAGTCTGCAGAGCAGAATTATTTTGTTGGATTTCATGTGCACTATTATATCTTCACCGATCATCCAGAAGAGGTTCCTGATGTGAAACTGGGTGAAGGACATCAGTTGACGGTGATGACAGTTGATAGTTCTAACAGATGGCAGGAGATGACATTGCGGAGAATGGAGAGGCTGGAGAAACTAATTGAGAGTCGATTGGTGAAGGAAGCTGACTATGTTTTCAGCCTTGACGTTGATACAAAGTTCTACGCCCGCTGGGGTGCAGAGACTTTGGGTCGTCTTGTAGGTGTGCTTCATCCTGGTTACTATCAAACACCACGTGAGCAATTCCCATATGAGCGAAGGCCTGAGTCTCAAGCGTTTATCCCTTATTCTGATGGTGATTATTATTATGGTGGAGCTGTGCTTGGTGGTGCAGTGAAAGATGTATATGAGGTTGCTAAGACCTGCAGAGAGCAGCTGGACATTGATGCAGCTAAATCCATTGAGGCAGCATGGCAAGAGGAGTCCCATTTGAACAAATACTTTGTTTATAACAAACCCAGTAAACTGCTTTCACCCGAGTACCTGTGGCAGGACT
>TCONS_00060291
CAACGGAACGAGGACACAACACCTAAAACAGCAGTAATGAAACTTCTTCAAAATGCAAATACCTTTCTTCTTGTTGTGGCTGGACTCTCTTTTGCTggGCTCATATATTTGGGCTACACCTCCTCTTCCATCAGATTTAAAGTACAAAGATTCTGCTTCAAcataacaaagGAACACCAGGAAAGTGTTCTCTTGCAGTTGCCACAAGGGCTTTCATTCAATCAGCCCAGTGTAGTGGGATATACAGTGTTTCTCAAAGAATTCCTGGAGTCTGCAGAGCAGAATTATTTTGTTGGATTTCATGTGCACTATTATATCTTCACCGATCATCCAGAAGAGGTTCCTGATGTGAAACTGGGTGAAGGACATCAGTTGACGGTGATGACAGTTGATAGTTCTAACAGATGGCAGGAGATGACATTGCGGAGAATGGAGAGGCTGGAGAAACTAATTGAGAGTCGATTGGTGAAGGAAGCTGACTATGTTTTCAGCCTTGACGTTGATACAAAGTTCTACGCCCGCTGGGGTGCAGAGACTTTGGGTCGTCTTGTAGGTGTGCTTCATCCTGGTTACTATCAAACACCACGTGAGCAATTCCCATATGAGCGAAGGCCTGAGTCTCAAGCGTTTATCCCTTATTCTGATGGTGATTATTATTATGGTGGAGCTGTGCTTGGTGGTGCAGTGAAAGATGTATATGAGGTTGCTAAGACCTGCAGAGAGCAGCTGGACATTGATGCAGCTAAATCCATTGAGGCAGCATGGCAAGAGGAGTCCCATTTGAACAAATACTTTGTTTATAACAAACCCAGTAAACTGCTTTCACCCGAGTACCTGTGGCAGGACT
>TCONS_00060290
ACACTCCTCCCTATATGTATCTCTTGCTGCTGTCTAGCTTTAATGGACATTTGCTTTTCAACGGAACGAGGACACAACACCTAAAACAGCAGTAATGAAACTTCTTCAAAATGCAAATACCTTTCTTCTTGTTGTGGCTGGACTCTCTTTTGCTggGCTCATATATTTGGGCTACACCTCCTCTTCCATCAGATTTAAAGTACAAAGATTCTGCTTCAAcataacaaagGAACACCAGGAAAGTGTTCTCTTGCAGTTGCCACAAGGGCTTTCATTCAATCAGCCCAGTGTAGTGGGacctGATGGCAAAATTGTACCTGTTACACCATGGTTAGCCCCAATTGTTTGGGAAGGAACTTTTGATCCCACATTGATTGATTCAGTCTACAAACAACAAAACGTCACTATAGCGACCACAGTCTTCGCTCTTGGAAAATATACAGTGTTTCTCAAAGAATTCCTGGAGTCTGCAGAGCAGAATTATTTTGTTGGATTTCATGTGCACTATTATATCTTCACCGATCATCCAGAAGAGGTTCCTGATGTGAAACTGGGTGAAGGACATCAGTTGACGGTGATGACAGTTGATAGTTCTAACAGATGGCAGGAGATGACATTGCGGAGAATGGAGAGGCTGGAGAAACTAATTGAGAGTCGATTGGTGAAGGAAGCTGACTATGTTTTCAGCCTTGACGTTGATACAAAGTTCTACGCCCGCTGGGGTGCAGAGACTTTGGGTCGTCTTGTAGGTGTGCTTCATCCTGGTTACTATCAAACACCACGTGAGCAATTCCCATATGAGCGAAGGCCTGAGTCTCAAGCGTTTATCCCTTATTCTGATGGTGATTATTATTATGGTGGAGCTGTGCTTGGTGGTGCAGTGAAAGATGTATATGAGGTTGCTAAGACCTGCAGAGAGCAGCTGGACATTGATGCAGCTAAATCCATT

Function

symbol description
gbgt1l4 Predicted to enable glycosyltransferase activity. Predicted to be involved in lipid glycosylation. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and vesicle. Is expressed in several structures, including EVL; ectoderm; epidermis; pectoral fin musculature; and peripheral olfactory organ. Orthologous to human GBGT1 (globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group)).

GO:

id name namespace
GO:0030259 lipid glycosylation biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0031982 vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031204-4 Predicted to enable glycosyltransferase activity. Predicted to be involved in lipid glycosylation. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and vesicle. Is expressed in several structures, including EVL; ectoderm; epidermis; pectoral fin musculature; and peripheral olfactory organ. Orthologous to human GBGT1 (globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group)).

Ensembl:

ensembl_id ENSDARG00000068503

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060287 False 1591 mRNA 0.38 7 23788592 23795688
TCONS_00060288 False 1671 mRNA 0.37 7 23788592 23800376
TCONS_00060289 False 828 processed_transcript 0.44 5 23789189 23795690
TCONS_00060291 False 847 lncRNA 0.44 6 23789189 23805329
TCONS_00060290 True 949 mRNA 0.43 7 23789283 23805387

Neighbor

gene id symbol gene type direction distance location
XLOC_031031 si:ch211-287c22.1 coding downstream 4853 23776680 ~ 23783739 (-)
XLOC_031030 BX957257.1 coding downstream 18035 23768377 ~ 23770557 (-)
XLOC_031029 BX957257.2 coding downstream 30005 23757933 ~ 23758587 (-)
XLOC_031028 gbgt1l2 coding downstream 39244 23738167 ~ 23749348 (-)
XLOC_031027 si:dkey-110k5.10 coding downstream 59002 23721515 ~ 23729590 (-)
XLOC_031033 GBGT1 coding upstream 34383 23839770 ~ 23843636 (-)
XLOC_031034 gbgt1l3 coding upstream 44260 23849647 ~ 23855447 (-)
XLOC_031035 gbgt1l3 coding upstream 69409 23874796 ~ 23878809 (-)
XLOC_031036 arap1a coding upstream 82927 23888314 ~ 23909934 (-)
XLOC_031037 map7d2a coding upstream 152185 23957572 ~ 24000211 (-)
XLOC_031017 NA non-coding downstream 332358 23446244 ~ 23456234 (-)
XLOC_031015 CT025748.1 non-coding downstream 446969 23331153 ~ 23341623 (-)
XLOC_031012 BX640521.1 non-coding downstream 565773 23222701 ~ 23222819 (-)
XLOC_031041 NA non-coding upstream 271238 24076625 ~ 24086136 (-)
XLOC_031051 BX119902.1 non-coding upstream 447072 24252459 ~ 24259292 (-)
XLOC_031053 BX119902.3 non-coding upstream 485256 24290643 ~ 24292159 (-)
XLOC_031055 NA non-coding upstream 601966 24407353 ~ 24414457 (-)
XLOC_031056 BX088551.1 non-coding upstream 684488 24489875 ~ 24489974 (-)

Expression


Co-expression Network