XLOC_031033 (GBGT1)


Basic Information

Item Value
gene id XLOC_031033
gene name GBGT1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 23839770 ~ 23843636 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060292
GAACAGATGGCCAAGTTGACCTAACACCATGGTTAGCCCCAATTGTTTGGGAAGGAACTTTTAATCCCAAACTGATTGATTCAATctacaaacaacaaaacatcactttagcgATGACTGTCTTCGCTCTTGGCAAATATACAGTGTTTCTTCAAGATTTCCTGGAGTCTGCAGAGCAACATTTTTTTGTTGGGTTTCGTGTGCATTACTATGTCTTCACCGATCATCCTGAAAAAATTCCTAATGTGAAAATAGGTGGAAAACGTAAACTGATAGTGATGACAGTCAATAGTTCGAGCAAATGGCAGGAGATGAGTTTGGGCAGGATGAAAAGGCTGGAGATGCTGATTGAGAGTGGACTGGTCAATGATGCTGACTATCTTTTCAGCCTTGATGTGGATACAAAGTTCTAAGGCCGCTGGGGAGCAGAGACTTTGGGTGATCTTATAGGTGTGATACATGCATGGTATTATAATTCTCCATGTGTGCTATTTCCATATGAGCGAAGGCCTGAGTCTCAAGCGTTTATTCCTTATTCTGAGGGTGATTATTATTACGGTGGAGCTGGTTCGGTGGGTACGGTGGTTCAGTGAAGTGCGTATATCAGCTTGCTAAAAGCTGTCGAGAGCAGCTGGACATTGATGCAGCTAAATCCATTGAGGCAGCATGGCAGGAGGAGTCCCATTTGAACAAGTACTTCCTTTATAACAAACCCAGTAAACTGCTTTCACCCGAATATTCTTGGGATGACCAAAAAACAAAACCACGAGAGATCAAAATCATTAGATTCTCACAAGTTCTTAAAAACTATGCTGAAGTTCGTCCAAACACATAAAATCTTTTAAGTGAAGA
>TCONS_00060293
AGCATGCATCtcaaaaatgcatacaaaatgAGTTACGCTCAAGATATTTTCAACAAGATGATAAGAAAACTGTATGAGAAGGCAAATTTTACTACCACAGTGAGCTCACCAATCCAATATGTAACAGATGGCCAAGTTGACCTAACACCATGGTTAGCCCCAATTGTTTGGGAAGGAACTTTTAATCCCAAACTGATTGATTCAATctacaaacaacaaaacatcactttagcgATGACTGTCTTCGCTCTTGGCAAATATACAGTGTTTCTTCAAGATTTCCTGGAGTCTGCAGAGCAACATTTTTTTGTTGGGTTTCGTGTGCATTACTATGTCTTCACCGATCATCCTGAAAAAATTCCTAATGTGAAAATAGGTGGAAAACGTAAACTGATAGTGATGACAGTCAATAGTTCGAGCAAATGGCAGGAGATGAGTTTGGGCAGGATGAAAAGGCTGGAGATGCTGATTGAGAGTGGACTGGTCAATGATGCTGACTATCTTTTCAGCCGCTGGGGAGCAGAGACTTTGGGTGATCTTATAGGTGTGATACATGCATGGTATTATAATTCTCCATGTGTGCTATTTCCATATGAGCGAAGGCCTGAGTCTCAAGCGTTTATTCCTTATTCTGAGGGTGATTATTATTACGGTGGAGCTGTGAAGTGCGTATATCAGCTTGCTAAAAGCTGTCGAGAGCAGCTGGACATTGATGCAGCTAAATCCATTGAGGCAGCATGGCAGGAGGAGTCCCATTTGAACAAGTACTTCCTTTATAACAAACCCAGTAAACTGCTTTCACCCGAATATTCTTGGGATGACCAAAAAACAAAACCACGAGAGATCAAAATCATTAGATTCTCACAAGTTCTTAAAAACTATGCTGAAGTTCGTCCAAACACATAA

Function

symbol description
gbgt1 Predicted to enable globoside alpha-N-acetylgalactosaminyltransferase activity. Predicted to be involved in globoside metabolic process and lipid glycosylation. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and vesicle.

GO: NA

KEGG:

id description
ko00603 Glycosphingolipid biosynthesis - globo and isoglobo series
ko01003 Glycosyltransferases

Ensembl:

ensembl_id ENSDARG00000091936

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060292 False 852 mRNA 0.41 2 23839770 23840920
TCONS_00060293 True 906 mRNA 0.40 6 23839787 23843636

Neighbor

gene id symbol gene type direction distance location
XLOC_031032 gbgt1l4 coding downstream 34383 23788592 ~ 23805387 (-)
XLOC_031031 si:ch211-287c22.1 coding downstream 56031 23776680 ~ 23783739 (-)
XLOC_031030 BX957257.1 coding downstream 69213 23768377 ~ 23770557 (-)
XLOC_031029 BX957257.2 coding downstream 81183 23757933 ~ 23758587 (-)
XLOC_031028 gbgt1l2 coding downstream 90422 23738167 ~ 23749348 (-)
XLOC_031034 gbgt1l3 coding upstream 6011 23849647 ~ 23855447 (-)
XLOC_031035 gbgt1l3 coding upstream 31160 23874796 ~ 23878809 (-)
XLOC_031036 arap1a coding upstream 44678 23888314 ~ 23909934 (-)
XLOC_031037 map7d2a coding upstream 113936 23957572 ~ 24000211 (-)
XLOC_031038 eif1axa coding upstream 158962 24002598 ~ 24008997 (-)
XLOC_031017 NA non-coding downstream 383536 23446244 ~ 23456234 (-)
XLOC_031015 CT025748.1 non-coding downstream 498147 23331153 ~ 23341623 (-)
XLOC_031012 BX640521.1 non-coding downstream 616951 23222701 ~ 23222819 (-)
XLOC_031041 NA non-coding upstream 232989 24076625 ~ 24086136 (-)
XLOC_031051 BX119902.1 non-coding upstream 408823 24252459 ~ 24259292 (-)
XLOC_031053 BX119902.3 non-coding upstream 447007 24290643 ~ 24292159 (-)
XLOC_031055 NA non-coding upstream 563717 24407353 ~ 24414457 (-)
XLOC_031056 BX088551.1 non-coding upstream 646239 24489875 ~ 24489974 (-)

Expression


Co-expression Network