XLOC_031034 (gbgt1l3)


Basic Information

Item Value
gene id XLOC_031034
gene name gbgt1l3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 23849647 ~ 23855447 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060294
ATTCTCTGAACACCTGTCCTATTATATAGAACAGTGGCTAAATTCTGACAGAATTATATCAGTTTAGTTGTACAGTTACTGACTGAAgatattttgttgttgtatttttctaCTTGAATCTTCTAAGTAAGCAAGGGTAACAGGTGGAATATAATGAAGCTTCAAAGTGTTAATGCATTTCTTCTCATGTTTGCTGGCACCGTAGTCATTGGACTCTTTTATTTGGGCGTCACCTCCCCCTCAATAAGACATATAGAGCAAAGATTCTGCCTCAATATAACAAAAAAGAGCTCGGAAAATGTTCTCTTGCAGTCGCCTCAAGGgCTTAAATATAATCAGCCCAGTGTattgggCCCAGATGGCAAAGTTGGTCCTCTGGCACCATGGTTAGCTCCAATTGTTTCTGAAGGAAGTTTTGATCCCACACTGATTGATGCAATCTACAAACAACAGAACATTACAGTAGCAACCACCATCTTTGCTCTTggaaaatacACCGTTTTTCTAAAAGATTTCCTGGAGTCTGCAGAGCAACATTTTTTTGTTGGATTTCGTGTGCACTATTATGTCTTCACCGATCATCCAGAGCAGGTTCCTGATGTGAAACTGGGTGAAGAACATGAACTGACGGTGATGACCGTAAATAGTTCGAGCAGATGGCAAGATATGAGTTTGGGCAGGATGAAAAGGCTGGAGATGCTGATTGAGAGTGGACTGGTCAATGATGCTGACTATCTTTTCAGCCTTGATGTGGATACAAAGTTCTACGGCCGCTGGGGAGCAGAGACTTTGGGTGATCTTATAGGTGTGATACATGCATGGTATTATTATACACCTCGTGAGCAATTCCCATATGAGAGAAGGCCTGAGTCTCAAGCGTTTATCCCTTATTCTGAGGGTGATTATTATTACGGTGGAGCTGTGCTTGGTGGTTCAGTGAAGTGCGTATATCAGCTTGCTAAAACCTGCAGAGAGCAACTGGACATTGATGCAGCTAAATCCATTGAGGCAGCATGGCAGGAGGAGTCACATTTGAACAAGTACTTCCTTTACAACAAACCCAGTAAACTGCTTTCACCCGAATATTCTTGGGATGATAAAAAGTCTAAACCAGACCAGATTAAAATTATTCGCTATTCTCATATTCCTAAAAACTATGCTGACGTTCGTCCAAACAAATAGAAGCTGTTATAGAGAGAGATGAAAAAAAATAGGTGTGCGGTAACAAAGAAGAGCCAGTTGGCCAAAACAATTTTGGAAAATCATCTTTATTAAActgtttcaaataataataaagaaattagttaaaaatgtta

Function

symbol description
gbgt1l3 Predicted to enable glycosyltransferase activity. Predicted to be involved in lipid glycosylation. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and vesicle.

GO:

id name namespace
GO:0030259 lipid glycosylation biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0031982 vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-46 Predicted to enable glycosyltransferase activity. Predicted to be involved in lipid glycosylation. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and vesicle.

Ensembl:

ensembl_id ENSDARG00000035555

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060294 True 1316 mRNA 0.40 7 23849647 23855447

Neighbor

gene id symbol gene type direction distance location
XLOC_031033 GBGT1 coding downstream 6011 23839770 ~ 23843636 (-)
XLOC_031032 gbgt1l4 coding downstream 44260 23788592 ~ 23805387 (-)
XLOC_031031 si:ch211-287c22.1 coding downstream 65908 23776680 ~ 23783739 (-)
XLOC_031030 BX957257.1 coding downstream 79090 23768377 ~ 23770557 (-)
XLOC_031029 BX957257.2 coding downstream 91060 23757933 ~ 23758587 (-)
XLOC_031035 gbgt1l3 coding upstream 19349 23874796 ~ 23878809 (-)
XLOC_031036 arap1a coding upstream 32867 23888314 ~ 23909934 (-)
XLOC_031037 map7d2a coding upstream 102125 23957572 ~ 24000211 (-)
XLOC_031038 eif1axa coding upstream 147151 24002598 ~ 24008997 (-)
XLOC_031039 rps6ka3a coding upstream 154221 24009668 ~ 24029228 (-)
XLOC_031017 NA non-coding downstream 393413 23446244 ~ 23456234 (-)
XLOC_031015 CT025748.1 non-coding downstream 508024 23331153 ~ 23341623 (-)
XLOC_031012 BX640521.1 non-coding downstream 626828 23222701 ~ 23222819 (-)
XLOC_031041 NA non-coding upstream 221178 24076625 ~ 24086136 (-)
XLOC_031051 BX119902.1 non-coding upstream 397012 24252459 ~ 24259292 (-)
XLOC_031053 BX119902.3 non-coding upstream 435196 24290643 ~ 24292159 (-)
XLOC_031055 NA non-coding upstream 551906 24407353 ~ 24414457 (-)
XLOC_031056 BX088551.1 non-coding upstream 634428 24489875 ~ 24489974 (-)

Expression


Co-expression Network