XLOC_031035 (gbgt1l3)


Basic Information

Item Value
gene id XLOC_031035
gene name gbgt1l3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 23874796 ~ 23878809 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060295
GAGCAGATGTTCAAGCTGACCTGACATCATGGTTAGCTCCAATAGTATGGGAAGGAACTTTTGATCCCAAACTAATTGATTCAATctacaaacaacaaaacatcacTGTAGCGACTACAGTCTTCGCTCTTGGCAAGTATACAGTGTTTCTTCAAGATTTCCTGGAGTCTGCAGAGCAAAATTTCTTTGTTGGATTTCGTGTGCACTATTATGTCTTCACCGATCATCCAGAGCAGGTTCCTGATGTGAAACTGGGTGGAGAACGTAAACTGACGGTGATGACAGTCAATAGTTCAAGCAGATGGCAGGAGATGAGTTTAGGCAGGATGAAAAGGCTGGAGATGCTGATTGAGAGTGGACTGGTCAATGATGCTGACTATCTTTTTAGCCTTGATGTGGATACAAAGTTCTACGGCCGCTGGGGAGCAGAGACTTTAGGTGATCTTATAGGTGTGATACATGCATGGCATTATAATTCTCCATGTGTGCTATTTCCATATGAGAGAAGGCCTGAGTCTCAAGCGTTTATCCCTTATTCTGAGGGTGATTATTATTATGGTGGAGCTGTGCTTGGTGGTTCAGTGAAGTGCGTATATCAGCTCGCTAAAACCTGTCGAGAGCAGCTGGACATTGATGCAGCTAAATCCATTGAGGCAGCATGGCAGGAGGAGTCCCATTTGAACAAGTACTTCCTTTATAACAAACCCAGTAAACTGCTTTCACCCGAATATTCTTGGGATGACCAAAAAATGAAACCACAAGAGATCAAAATCATTAGATTCTCTCAAGTCCTCAAAAACTATGCTGAAGTTCGTCCAAACATATAAAAGCTTTTAACTGTATGGAGACTGTATACActtcatttta
>TCONS_00060296
agactccaccctgagtctgttcagctgatatgggcgcgattcggggaagcccagatcgatctgttgcttcccccgagatcgctcattGCATATGTATGTGATCATTCTTTTTTAAACAGAGCAGATGTTCAAGCTGACCTGACATCATGGTTAGCTCCAATAGTATGGGAAGGAACTTTTGATCCCAAACTAATTGATTCAATctacaaacaacaaaacatcacTGTAGCGACTACAGTCTTCGCTCTTGGCAAGTATACAGTGTTTCTTCAAGATTTCCTGGAGTCTGCAGAGCAAAATTTCTTTGTTGGATTTCGTGTGCACTATTATGTCTTCACCGATCATCCAGAGCAGGTTCCTGATGTGAAACTGGGTGGAGAACGTAAACTGACGGTGATGACAGTCAATAGTTCAAGCAGATGGCAGGAGATGAGTTTAGGCAGGATGAAAAGGCTGGAGATGCTGATTGAGAGTGGACTGGTCAATGATGCTGACTATCTTTTTAGCCTTGATGTGGATACAAAGTTCTACGGCCGCTGGGGAGCAGAGACTTTAGGTGATCTTATAGGTGTGATACATGCATGGCATTATAATTCTCCATGTGTGCTATTTCCATATGAGAGAAGGCCTGAGTCTCAAGCGTTTATCCCTTATTCTGAGGGTGATTATTATTATGGTGGAGCTGTGCTTGGTGGTTCAGTGAAGTGCGTATATCAGCTCGCTAAAACCTGTCGAGAGCAGCTGGACATTGATGCAGCTAAATCCATTGAGGCAGCATGGCAGGAGGAGTCCCATTTGAACAAGTACTTCCTTTATAACAAACCCAGTAAACTGCTTTCACCCGAATATTCTTGGGATGACCAAAAAATGAAACCACAAGAGATCAAAATCATTAGATTCTCTCAAGTCCTCAAAAACTATGCTGAAGTTCGTCCAAACATATAA

Function

symbol description
gbgt1l3 Predicted to enable glycosyltransferase activity. Predicted to be involved in lipid glycosylation. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and vesicle.

GO:

id name namespace
GO:0030259 lipid glycosylation biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0031982 vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-46 Predicted to enable glycosyltransferase activity. Predicted to be involved in lipid glycosylation. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and vesicle.

Ensembl:

ensembl_id ENSDARG00000091969

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060295 False 867 mRNA 0.42 2 23874796 23876085
TCONS_00060296 True 945 mRNA 0.43 3 23874836 23878809

Neighbor

gene id symbol gene type direction distance location
XLOC_031034 gbgt1l3 coding downstream 19349 23849647 ~ 23855447 (-)
XLOC_031033 GBGT1 coding downstream 31160 23839770 ~ 23843636 (-)
XLOC_031032 gbgt1l4 coding downstream 69409 23788592 ~ 23805387 (-)
XLOC_031031 si:ch211-287c22.1 coding downstream 91057 23776680 ~ 23783739 (-)
XLOC_031030 BX957257.1 coding downstream 104239 23768377 ~ 23770557 (-)
XLOC_031036 arap1a coding upstream 9505 23888314 ~ 23909934 (-)
XLOC_031037 map7d2a coding upstream 78763 23957572 ~ 24000211 (-)
XLOC_031038 eif1axa coding upstream 123789 24002598 ~ 24008997 (-)
XLOC_031039 rps6ka3a coding upstream 130859 24009668 ~ 24029228 (-)
XLOC_031040 pdha1a coding upstream 152505 24031314 ~ 24044877 (-)
XLOC_031029 BX957257.2 non-coding downstream 116209 23757933 ~ 23758587 (-)
XLOC_031017 NA non-coding downstream 418562 23446244 ~ 23456234 (-)
XLOC_031015 CT025748.1 non-coding downstream 533173 23331153 ~ 23341623 (-)
XLOC_031012 BX640521.1 non-coding downstream 651977 23222701 ~ 23222819 (-)
XLOC_031041 NA non-coding upstream 197816 24076625 ~ 24086136 (-)
XLOC_031051 BX119902.1 non-coding upstream 373650 24252459 ~ 24259292 (-)
XLOC_031053 BX119902.3 non-coding upstream 411834 24290643 ~ 24292159 (-)
XLOC_031055 NA non-coding upstream 528544 24407353 ~ 24414457 (-)
XLOC_031056 BX088551.1 non-coding upstream 611066 24489875 ~ 24489974 (-)

Expression


Co-expression Network