XLOC_031042 (si:ch211-114c12.5)


Basic Information

Item Value
gene id XLOC_031042
gene name si:ch211-114c12.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 24102499 ~ 24112175 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060304
GACATGATAGGACAGAATTGGAGTGCGCTGGTTCTGCAGGTGTGCACAACAGAGATCTCTTTAGCTGGCCTGTTACCGCGGTGGAGAAGGCTGAGGTCCTCAAAAGTGCAGCCACTATGAAGAAGAGTATCTTGAAAGCTAACCGATATGAGGCGCCTGAAGCCGGTTTGAGTAACTCTATTGGAGCTGTAACCTGGACTCTTCCTGATGAAGGTCTTCAGGCTCACAGCTCAGTTCCCAGCAAGAGCAGCCAAAGCCCCAGACAAAAGGATTTGAAGGATCTCCGCAGCCTGCAGGAATGTGTGAAGTTtatcactcagtggaaacagcaGGTCGACCAAGTCTGCAAGCCTGGTGCCAATGCTGATGAAGGCCCGGGTGCTAGTGTGCTTGCAGAGCCACGCAGTCTGGAGCAATGCCGCAAACTCATCCTTGAGTGGGCACAGGAGCTCAGGAAGGTGGACAGTTTGTTTAGTGAGGGTACATGGAGAAAAGAAAGAGACACCTCCTGGGAGCAGAAAGAGAGCCAGGCTGACTCTGCCAAGCATATGGAGCAGAAGATCATGGAATGGGCTAAAGAGCTGCAGGCCGTGTCAGAGCGCTGTGGGGTGATGAGACAAGAATTGGCCCAATTTCTCAAGCAGCTGGAACTGAAGAAGAGGAAAATCTTGACTCTGTTGCCGTTTCTGGAGTTCATAACTTGGTCTTTGCTGAAGCAGGACAGCCAGGGTGTCGTTCCACAGCTATGGCTCCTCAGTAAACATCGTACTTGGAAAACAGAGACACCAAAGTACATTCCAAACTCAGTGTGGAGATGGATCCGCAGTGCTTCAGTGGACATCTCACTGGACCCAATGACTAACCACCCATGGTTACAGCTCTCAGATGATAAGAAGAAGGTACAGGAAGCTCTGAGTGAAACTGAAGTGTCGTTCAGCAAGCAGCGCTTCGACAGCTGGCCGTGTGTCCTGGGTTGGGAAGGGCTCACCTCCGGTCGCTACTATTGGGAAGTAGATATTGCCAACAAGGGCTACTGGCGTATCGGAGTGACCACTGCCTCCTCTAAAAGGCACGGCAGGAGCCCTATGAACCCCTCTGAGGGCTTTTGGACAATATGGAAAAGCACAAGGCAGTTTTATGCATGCACCAAGCCGGAGACCGAGCTGCCTCTGACACTTGTTCCTAAGAAGCTGGGAGTCTACCTTGACTACGAGGAAGGACAGGTGTCTTTCTACAATGTAGAGACACGCACTCATATCTTCACATTTACTGCAAATTTCCGTGAAACATTGTTTCCACTTTTTGCACCGTTGGATGGACGCACACTTATCACACTGTCCACCGCTGAGGTCAATCCAGAAACGGCTTCTCTCTAA

Function

symbol description
si:ch211-114c12.5 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm.

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005737 cytoplasm cellular_component
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-13 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000092931

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060304 True 1376 mRNA 0.51 11 24102499 24112175

Neighbor

gene id symbol gene type direction distance location
XLOC_031041 NA coding downstream 16363 24076625 ~ 24086136 (-)
XLOC_031040 pdha1a coding downstream 57622 24031314 ~ 24044877 (-)
XLOC_031039 rps6ka3a coding downstream 73271 24009668 ~ 24029228 (-)
XLOC_031038 eif1axa coding downstream 93502 24002598 ~ 24008997 (-)
XLOC_031037 map7d2a coding downstream 102288 23957572 ~ 24000211 (-)
XLOC_031043 capga coding upstream 4253 24116428 ~ 24127432 (-)
XLOC_031044 mrps31 coding upstream 26271 24138446 ~ 24154437 (-)
XLOC_031045 si:ch211-137i24.10 coding upstream 52966 24165141 ~ 24174956 (-)
XLOC_031046 sox19a coding upstream 87005 24199180 ~ 24201437 (-)
XLOC_031047 eif4a1b coding upstream 96238 24208413 ~ 24219344 (-)
XLOC_031030 BX957257.1 non-coding downstream 331942 23768377 ~ 23770557 (-)
XLOC_031029 BX957257.2 non-coding downstream 343912 23757933 ~ 23758587 (-)
XLOC_031017 NA non-coding downstream 646265 23446244 ~ 23456234 (-)
XLOC_031015 CT025748.1 non-coding downstream 760876 23331153 ~ 23341623 (-)
XLOC_031051 BX119902.1 non-coding upstream 140284 24252459 ~ 24259292 (-)
XLOC_031053 BX119902.3 non-coding upstream 178468 24290643 ~ 24292159 (-)
XLOC_031055 NA non-coding upstream 295178 24407353 ~ 24414457 (-)
XLOC_031056 BX088551.1 non-coding upstream 377700 24489875 ~ 24489974 (-)
XLOC_031060 BX537282.1 non-coding upstream 504416 24616591 ~ 24619088 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_02224117_02226286 NA coding CI01000339 null 2223283 ~ 2226286 (-)