XLOC_031043 (capga)


Basic Information

Item Value
gene id XLOC_031043
gene name capga
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 24116428 ~ 24127432 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060305
AAGAGCTTCACACAGTCAATGCCTCAATAACTGTTTGGCCTTTGTAAGTTACCGAGGGGTAAATAGCAGGAAGTTATGAGGCAAGTCAGTCAACTGTATATGCAGAAGAGGTGGTTGTTCAGGCAGCTGTTACATTTAAGAGCTGTCAGGAGCTGGACTGACATCAGCAAACACTGTTGCATTAAGCAGGATGCTTAATCTGCGGGCAGCTCAGAGCCAGTTCACCCATGAAGTGCGAGAGCCTGGGCTATGGGTTTGGAGGGTGGAGAAGATGAAGGCTGTGCTCCTTGACCCTTCGCAGAGGGGGATCTTCTACAATGGAGATGCGTACATCGTGCTCAGCAACCGTGGAAAGGATGGAAGTGACCTGCACATGTGGATGGGGGAAAAGTCTTCCCCGGATGAGCAGGGTGCTTGTGCCATGCTTGCCACTCAACTGGACAGCTTCTTGGGAGGAGAGCCAGTGCAACACAGACAGGTGCAGGGCTTCGAGTCACATGAATTCATGGGACTTTTTCCTAAAGGAGTCAGCTATAAGGAGGGTGGGGTGGAGTCAGGCTTCAAGAGTGCCAGGTCTAGAATTGATCCTGTTAAATATCTGTACCAAGTCAAAGGAAAGAAAAACATCCGCGCAAGAGAGGTGGAGTTTAGCTGGGGGAGCTTCAACAAGGGGGACTGTTTCATACTGGACCTGGGAGAGAATATAGTCGTATGGATTGGTTCCAAAGCCAACATGTTTGAGCGACAGAAGGTGCGTGAGATAGCAATGCTGATCAGAGACACCGAGAGGAATGGCAAAGCTCACATCATTGATGTTCGAGAGGGAGAGGAACCAGTAGAGATGGTCAAGGCACTTGGTCCAGTTCCAGCTCTGAAGGACAGCTCAACAGAGGAAGACTCTGAAGCAGATATCACCAATTCTGCTTCCCTTTACAAGGTGTCTAATGCAACAGGCCAAATGACTTTAACAAAACTGTGTGACAAAGGACCTTTCGGTCAAGAGCTGCTGGAGAAAGACGACTGCTTCATACTGGACAATGGATCCAATGGGAAGATCTATGTTTGGAAAGGGAATGGAGCTAATGCAGAGGAGAAGAGAGTCGCCTTGAAGGTAGCAGATGAGTTTATTACCGAGATGAATTACCCCAGGATGAGAACGCAGGTGGAAATTCTCCCTCAGGGTCGTGAATCGGTGCTCTTCAAACAGTTCTTCAAGAGCTGGAGTTAAACATCAACACCAGCAGGATGTATGATACTCTTTTTGTATTATCGCACAGCATACTAGCCTTGAGTGGTGTAGAAGACTACCTGTTGAAACTCTTTGCTGTTAGCCAAAGGATTGCTTGTTTATTATGAACGGGActgttgtcatttttatttaaaaaaaaatgcctatttaagaataatgtttttaaaaaggccATTTAAATTGTTCAATAATTGTCTGTCAAATGCAAAATTAAAAGTATAAAACATAACTCAAAGTTCTGGTATTATGTGAATTTGaaatttccgggtttctcagtagcagattTAATCACAGCTGGGTAAACTTCGAGAGTAGTGAATGGCAGCGAGtgggagagcggggcacaaagtaacactttttggttgtggccaaataatgaacaaagtaacgGGAAtagacaggcccggattggctaatcgggaggaccgggagaattcccggtgggccg
>TCONS_00060306
GCAGCTGTTACATTTAAGAGCTGTCAGGAGCTGGACTGACATCAGCAAACACTGTTGCATTAAGGATGCTTAATCTGCGGGCAGCTCAGAGCCAGTTCACCCATGAAGTGCGAGAGCCTGGGCTATGGGTTTGGAGGGTGGAGAAGATGAAGGCTGTGCTCCTTGACCCTTCGCAGAGGGGGATCTTCTACAATGGAGATGCGTACATCGTGCTCAGCAACCGTGGAAAGGATGGAAGTGACCTGCACATGTGGATGGGGGAAAAGTCTTCCCCGGATGAGCAGGGTGCTTGTGCCATGCTTGCCACTCAACTGGACAGCTTCTTGGGAGGAGAGCCAGTGCAACACAGACAGGTGCAGGGCTTCGAGTCACATGAATTCATGGGACTTTTTCCTAAAGGAGTCAGCTATAAGGAGGGTGGGGTGGAGTCAGGCTTCAAGAGTGCCAGGTCTAGAATTGATCCTGTTAAATATCTGTACCAAGTCAAAGGAAAGAAAAACATCCGCGCAAGAGAGGTGGAGTTTAGCTGGGGGAGCTTCAACAAGGGGGACTGTTTCATACTGGACCTGGGAGAGAATATAGTCGTATGGATTGGTTCCAAAGCCAACATGTTTGAGCGACAGAAGGTGCGTGAGATAGCAATGCTGATCAGAGACACCGAGAGGAATGGCAAAGCTCACATCATTGATGTTCGAGAGGGAGAGGAACCAGTAGAGATGGTCAAGGCACTTGGTCCAGTTCCAGCTCTGAAGGACAGCTCAACAGAGGAAGACTCTGAAGCAGATATCACCAATTCTGCTTCCCTTTACAAGGTGTCTAATGCAACAGGCCAAATGACTTTAACAAAACTGTGTGACAAAGGACCTTTCGGTCAAGAGCTGCTGGAGAAAGACGACTGCTTCATACTGGACAATGGATCCAATGGGAAGATCTATGTTTGGAAAGGGAATGGAGCTAATGCAGAGGAGAAGAGAGTCGCCTTGAAGGTAGCAGATGAGTTTATTACCGAGATGAATTACCCCAGGATGAGAACGCAGGTGGAAATTCTCCCTCAGGGTCGTGAATCGGTGCTCTTCAAACAGTTCTTCAAGAGCTGGAGTTAAACATCAACACCAGCAGGATGTATGATACTCTTTTTGTATTATCGCACAGCATACTAGCCTTGAGTGGTGTAGAAGACTACCTGTTGAAACTCTTTGCTGT
>TCONS_00060307
CTTCCTCAGCAGGATGCTTAATCTGCGGGCAGCTCAGAGCCAGTTCACCCATGAAGTGCGAGAGCCTGGGCTATGGGTTTGGAGGGTGGAGAAGATGAAGGCTGTGCTCCTTGACCCTTCGCAGAGGGGGATCTTCTACAATGGAGATGCGTACATCGTGCTCAGCAACCGTGGAAAGGATGGAAGTGACCTGCACATGTGGATGGGGGAAAAGTCTTCCCCGGATGAGCAGGGTGCTTGTGCCATGCTTGCCACTCAACTGGACAGCTTCTTGGGAGGAGAGCCAGTGCAACACAGACAGGTGCAGGGCTTCGAGTCACATGAATTCATGGGACTTTTTCCTAAAGGAGTCAGCTATAAGGAGGGTGGGGTGGAGTCAGGCTTCAAGAGTGCCAGGTCTAGAATTGATCCTGTTAAATATCTGTACCAAGTCAAAGGAAAGAAAAACATCCGCGCAAGAGAGGTGGAGTTTAGCTGGGGGAGCTTCAACAAGGGGGACTGTTTCATACTGGACCTGGGAGAGAATATAGTCGTATGGATTGGTTCCAAAGCCAACATGTTTGAGCGACAGAAGGTGCGTGAGATAGCAATGCTGATCAGAGACACCGAGAGGAATGGCAAAGCTCACATCATTGATGTTCGAGAGGGAGAGGAACCAGTAGAGATGGTCAAGGCACTTGGTCCAGTTCCAGCTCTGAAGGACAGCTCAACAGAGGAAGACTCTGAAGCAGATATCACCAATTCTGCTTCCCTTTACAAGGTGTCTAATGCAACAGGCCAAATGACTTTAACAAAACTGTGTGACAAAGGACCTTTCGGTCAAGAGCTGCTGGAGAAAGACGACTGCTTCATACTGGACAATGGATCCAATGGGAAGATCTATGTTTGGAAAGGGAATGGAGCTAATGCAGAGGAGAAGAGAGTCGCCTTGAAGGTAGCAGATGAGTTTATTACCGAGATGAATTACCCCAGGATGAGAACGCAGGTGGAAATTCTCCCTCAGGGTCGTGAATCGGTGCTCTTCAAACAGTTCTTCAAGAGCTGGAGTTAAACATCAACACCAGCAGGAT

Function

symbol description
capga Predicted to enable actin filament binding activity and phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in actin filament severing; actin polymerization or depolymerization; and barbed-end actin filament capping. Predicted to be active in actin cytoskeleton and cytoplasm. Orthologous to human CAPG (capping actin protein, gelsolin like).

GO:

id name namespace
GO:0008154 actin polymerization or depolymerization biological_process
GO:0051014 actin filament severing biological_process
GO:0051016 barbed-end actin filament capping biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005546 phosphatidylinositol-4,5-bisphosphate binding molecular_function
GO:0051015 actin filament binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060531-6 Predicted to enable actin filament binding activity and phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in actin filament severing; actin polymerization or depolymerization; and barbed-end actin filament capping. Predicted to be active in actin cytoskeleton and cytoplasm. Orthologous to human CAPG (capping actin protein, gelsolin like).

Ensembl:

ensembl_id ENSDARG00000035560

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060305 False 1697 mRNA 0.46 9 24116428 24127432
TCONS_00060306 False 1203 mRNA 0.49 9 24116797 24127310
TCONS_00060307 True 1070 mRNA 0.50 8 24116878 24124118

Neighbor

gene id symbol gene type direction distance location
XLOC_031042 si:ch211-114c12.5 coding downstream 4253 24102499 ~ 24112175 (-)
XLOC_031041 NA coding downstream 30292 24076625 ~ 24086136 (-)
XLOC_031040 pdha1a coding downstream 71551 24031314 ~ 24044877 (-)
XLOC_031039 rps6ka3a coding downstream 87200 24009668 ~ 24029228 (-)
XLOC_031038 eif1axa coding downstream 107431 24002598 ~ 24008997 (-)
XLOC_031044 mrps31 coding upstream 11014 24138446 ~ 24154437 (-)
XLOC_031045 si:ch211-137i24.10 coding upstream 37709 24165141 ~ 24174956 (-)
XLOC_031046 sox19a coding upstream 71748 24199180 ~ 24201437 (-)
XLOC_031047 eif4a1b coding upstream 80981 24208413 ~ 24219344 (-)
XLOC_031048 senp3a coding upstream 92725 24220157 ~ 24231139 (-)
XLOC_031030 BX957257.1 non-coding downstream 345871 23768377 ~ 23770557 (-)
XLOC_031029 BX957257.2 non-coding downstream 357841 23757933 ~ 23758587 (-)
XLOC_031017 NA non-coding downstream 660194 23446244 ~ 23456234 (-)
XLOC_031015 CT025748.1 non-coding downstream 774805 23331153 ~ 23341623 (-)
XLOC_031051 BX119902.1 non-coding upstream 125027 24252459 ~ 24259292 (-)
XLOC_031053 BX119902.3 non-coding upstream 163211 24290643 ~ 24292159 (-)
XLOC_031055 NA non-coding upstream 279921 24407353 ~ 24414457 (-)
XLOC_031056 BX088551.1 non-coding upstream 362443 24489875 ~ 24489974 (-)
XLOC_031060 BX537282.1 non-coding upstream 489159 24616591 ~ 24619088 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_02231730_02238440 CAPGA coding CI01000339 null 2231730 ~ 2238440 (-)