XLOC_031044 (mrps31)


Basic Information

Item Value
gene id XLOC_031044
gene name mrps31
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 24138446 ~ 24154437 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060308
AGTTGTCAGCGCTGCACAGGGAAACGTGCATGGACGACATTGAGGTCTTGTAAGAGGGGCAAATATGTACAGAAGattgttaataaatatacatCAGGTTCGAAATGGATTAATTCATGCACAGAAGACACGAACACCCTCcgtaaaatgtaaagaaaatgagGGTTTTGCTCACACGTTTTGGACCACAGGTTCAACAAGCCACAGGCCATTAGGAACCAGTAGCATCTGTTTTAGTGACAATAAAGAGAGCTCCACATCCCTGTCAGATGACAAAGAAAAGAGACGAGAAGAGAATGAGGCTAAAGCTGAAGTTGGCACTGATGGCCAGAGGAACACAGAAATTAAAAAGGGCCCGGATATATCAAATACAGCTTTGACATCAGAACTAGAGACTGAAGTAGAGTTGAAACCTAAGGAAATCAAGAAAcctgaaaaagagaaaactgGGAAGGAGAGTCTTCTGGAGCTGCTTGGGGCAATGAAGGTGGATGTCACTACTGTGCGTAAAGTGAGACCCCCAAGGTTTCCTCGAATCAGTGAAAAACCCAGCACAGACCAAATGGAAAGCACACAGAGCATGTTTCAGGATGCCATGGCTGAGGGTTCGAAACAGCGCGAGACCTTGAATCCAGCGCTGGTTGCTGCAGCTTCTGCAGCTGCGTCCACGTTGCCAAACAGCCAACAGGTGGAGTCAGAGCTCCTCCAGCAGCTGAGGAAACATGAAGCAGAACCGGACGCTCAGAGAGCCGACAGACAGAACATAGGAGACATAATTGCTGATATGAAAGTTGGGAAAAGGCAGATGGGCAGATCAAACAGCAGGCCCAGCAATCAGATCCGCTTTGATGATGACGGACAGGGCTATACAGAAGACAGAAGCATTACCAGTGAACTGATGAATGGAATTCACAGAAGGAAGAACTCCTTCACTGGCAAGAGGTTAAACATCTTCTCTCCAGGTATGGAGCAAGAATCGTCAGAAATGGGCCCGACCCTTTGGGATATTGATTTAGCGAATCAAATTGTTCAGTCGACAAATCAGATGCCTCGTAATGGCTTTGAGGAGATGATGCAGTGGACCAAAGAGGGCAAACTCTGGCAATACCCAATCAACAATGAGGCTGGTCTGGATGAGGAGGCGAGCGTACCCTTCCATGAGCACGTGTTCCTGGAGAAGCACCTGGAATCGTTTCCCCGGCAGGGTCCAGTCAGGCACTTCATGGAGCTTGTAATCACAGGCCTCTCAAAGAATCATCACCTCACAGTTCAACAGAAACAGGAGCATATCGCCTGGTTTAGAGACTACTTCCAGCAGAAAGATGATGTAATGAAAGAGGCTCAAGCGTAACTTTACTGAAGATCAAAACCAGAGAGGAATAAAGTCCGTTAAGATGCTTACTGCAGTAATGACTAATAGAACTAAGCAACAATTGCATCCATAATCTGCTTAAGTctccattACATATTAAATCTTTTTCATTAAATTGTATGCTGCTCGTTATTCAGTTCACTGGTATGTTTTATGTGTTGCTTTAAAGCAACATAAagaattttacaaaataattgagACAATTACTATTTTCCTTATTAACACCA
>TCONS_00060309
aaaataaatacataagcaaataatttattatactACGTGAGGTCATGACTTAAAGAATCAATTGAGTTGCTTTTTAACCACTCTGTTCAAAAGAACCAACTCGCATAAATGACTCGCTCGGGCTTCCCATCACTGAAGGGATGGAGGTTGACAGCAGCAACAGCAGACCCCTCCCCTGGACCACTTTATGAGTTTGTCCCTGTTCCGATTACGATCCAGTTTAATCGCATTGTATCTGTATCTAAAAcagaccaattaaaaaaaataaagtcgcAAAattgaaatacttttaaaaatgataaattagTAAATTCACATTAGTGGATTCAAGAAAAAGCCCGGAACTTGTATACGTCTCCGGCGCCGGTCGGACAGTTGTCAGCGCTGCACAGGGAAACGTGCATGGACGACATTGAGGTCTTGTAAGAGGGGCAAATATGTACAGAAGattgttaataaatatacatCAGGTTCGAAATGGATTAATTCATGCACAGAAGACACGAACACCCTCcgtaaaatgtaaagaaaatgagGGTTTTGCTCACACGTTTTGGACCACAGGTTCAACAAGCCACAGGCCATTAGGAACCAGTAGCATCTGTTTTAGTGACAATAAAGAGAGCTCCACATCCCTGTCAGATGACAAAGAAAAGAGACGAGAAGAGAATGAGGCTAAAGCTGAAGTTGGCACTGATGGCCAGAGGAACACAGAAATTAAAAAGGGCCCGGATATATCAAATACAGCTTTGACATCAGAACTAGAGACTGAAGTAGAGTTGAAACCTAAGGAAATCAAGAAAcctgaaaaagagaaaactgGGAAGGAGAGTCTTCTGGAGCTGCTTGGGGCAATGAAGGTGGATGTCACTACTGTGCGTAAAGTGAGACCCCCAAGGTTTCCTCGAATCAGTGAAAAACCCAGCACAGACCAAATGGAAAGCACACAGAGCATGTTTCAGGATGCCATGGCTGAGGGTTCGAAACAGCGCGAGACCTTGAATCCAGCGCTGGTTGCTGCAGCTTCTGCAGCTGCGTCCACGTTGCCAAACAGCCAACAGGTGGAGTCAGAGCTCCTCCAGCAGCTGAGGAAACATGAAGCAGAACCGGACGCTCAGAGAGCCGACAGACAGAACATAGGAGACATAATTGCTGATATGAAAGTTGGGAAAAGGCAGATGGGCAGATCAAACAGCAGGCCCAGCAATCAGATCCGCTTTGATGATGACGGACAGGGCTATACAGAAGACAGAAGCATTACCAGTGAACTGATGAATGGAATTCACAGAAGGAAGAACTCCTTCACTGGCAAGAGGTTAAACATCTTCTCTCCAGGTATGGAGCAAGAATCGTCAGAAATGGGCCCGACCCTTTGGGATATTGATTTAGCGAATCAAATTGTTCAGTCGACAAATCAGATGCCTCGTAATGGCTTTGAGGAGATGATGCAGTGGACCAAAGAGGGCAAACTCTGGCAATACCCAATCAACAATGAGGCTGGTCTGGATGAGGAGGCGAGCGTACCCTTCCATGAGCACGTGTTCCTGGAGAAGCACCTGGAATCGTTTCCCCGGCAGGGTCCAGTCAGGCACTTCATGGAGCTTGTAATCACAGGCCTCTCAAAGAATCATCACCTCACAGTTCAACAGAAACAGGAGCATATCGCCTGGTTTAGAGACTACTTCCAGCAGAAAGATGATGTAATGAAAGAGGCTCAAGCGTAA

Function

symbol description
mrps31 Predicted to be a structural constituent of ribosome. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Orthologous to human MRPS31 (mitochondrial ribosomal protein S31).

GO:

id name namespace
GO:0005763 mitochondrial small ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-030131-3715 Predicted to be a structural constituent of ribosome. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Orthologous to human MRPS31 (mitochondrial ribosomal protein S31).

Ensembl:

ensembl_id ENSDARG00000057855

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060308 False 1599 mRNA 0.44 8 24138446 24154064
TCONS_00060309 True 1724 mRNA 0.45 7 24138778 24154437

Neighbor

gene id symbol gene type direction distance location
XLOC_031043 capga coding downstream 11014 24116428 ~ 24127432 (-)
XLOC_031042 si:ch211-114c12.5 coding downstream 26271 24102499 ~ 24112175 (-)
XLOC_031041 NA coding downstream 52310 24076625 ~ 24086136 (-)
XLOC_031040 pdha1a coding downstream 93569 24031314 ~ 24044877 (-)
XLOC_031039 rps6ka3a coding downstream 109218 24009668 ~ 24029228 (-)
XLOC_031045 si:ch211-137i24.10 coding upstream 10704 24165141 ~ 24174956 (-)
XLOC_031046 sox19a coding upstream 44743 24199180 ~ 24201437 (-)
XLOC_031047 eif4a1b coding upstream 53976 24208413 ~ 24219344 (-)
XLOC_031048 senp3a coding upstream 65720 24220157 ~ 24231139 (-)
XLOC_031049 plscr3a coding upstream 80029 24234466 ~ 24238733 (-)
XLOC_031030 BX957257.1 non-coding downstream 367889 23768377 ~ 23770557 (-)
XLOC_031029 BX957257.2 non-coding downstream 379859 23757933 ~ 23758587 (-)
XLOC_031017 NA non-coding downstream 682212 23446244 ~ 23456234 (-)
XLOC_031015 CT025748.1 non-coding downstream 796823 23331153 ~ 23341623 (-)
XLOC_031051 BX119902.1 non-coding upstream 98022 24252459 ~ 24259292 (-)
XLOC_031053 BX119902.3 non-coding upstream 136206 24290643 ~ 24292159 (-)
XLOC_031055 NA non-coding upstream 252916 24407353 ~ 24414457 (-)
XLOC_031056 BX088551.1 non-coding upstream 335438 24489875 ~ 24489974 (-)
XLOC_031060 BX537282.1 non-coding upstream 462154 24616591 ~ 24619088 (-)

Expression


Co-expression Network