XLOC_031053 (BX119902.3)


Basic Information

Item Value
gene id XLOC_031053
gene name BX119902.3
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 24290643 ~ 24292159 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060322
gtgtgtgtttgtgtgtgctctcCCTCCTCACTGTGTCCTCTCACTCCTCACTCAAACTGTGTTTGCACCTGGATGGGTTAAAAGCAGAAGACCGCTTTTGTTTACGGATAAAACCATACTTGACTTTACTCACTTCAAAAAATGCTGGCAATGATACTCCGCAAAACCAAGCTGATCCCATAGAATGATGTCAGCAGGAAGAGAAGGAGCGTCAAGATGAACTGTCTGTGATTCGCTTGGCCTACACAGCTGTTTATCCTGCCATGGAAAGACACAAAGACACAAAAGTCAGCAATCATGTGTGCACGCATGCagacattttcattaaaataactgaagtttaaaaaaagttgaacttgaatgtggtttgATTGAGGATTCTGTGGTCTGTGGCATGTTTATGTTATCTGtgcctctgtctgtctgtgtgtgtgttgaagcagCATGCAGACAGATTGGCCTGGTGAGAGCTTGCTTTACTGTGCTGAAAGCTGCGTTCCTGTGGCCTTTGCACATGTCTCACCAGCCTGCCCTGCTCCAGTGACGTCTTTGGGGAATCAGCTTGAACATATGCGTGTGTCTGATGGGGAAGTGTGTGCTTGCATACAATTGAGAAAGTATCAGAAAGAGTCAGATTACTGGCTTGAGCACCAGAGGATTGACTTACTGTATGATTAGTTTGAGAATTGTTCAACTTCTGTAGCAATGCTATGCATGAAGCCAAATAAGACACATTTTAAGGCACAgatacaacaataaaataaatattacaaatcaaAGGACATGTCATAATTTCAATTATTTTACAACAAGCTCAGCCAtaaagttataattttttttaaatgggacaGTGATGGCAAAATTACTAATATGTACAGTAACCCTAGACCACTGGTCTTATGTGGCAtgggtatatttttggcaataatcaaaaatttattgtatgcaacataggctcattctgaaaacgtagacccatatatttatttcaag
>TCONS_00060321
gtgtgtgtttgtgtgtgctctcCCTCCTCACTGTGTCCTCTCACTCCTCACTCAAACTGTGTTTGCACCTGGATGGGTTAAAAGCAGAAGACCGCTTTTGTTTACGGATAAAACCATACTTGACTTTACTCACTTCAAAAAATGCTGGCAATGACTCCAGGGCAGTAAAGCATGGCTGTGAACAGACTCTGTTTTGGACAGATACTCCGCAAAACCAAGCTGATCCCATAGAATGATGTCAGCAGGAAGAGAAGGAGCGTCAAGATGAACTGTCTGTGATTCGCTTGGCCTACACAGCTGTTTATCCTGCCATGGAAAGACACAAAGACACAAAAGTCAGCAATCATGTGTGCACGCATGCagacattttcattaaaataactgaagtttaaaaaaagttgaacttgaatgtggtttgATTGAGGATTCTGTGGTCTGTGGCATGTTTATGTTATCTGtgcctctgtctgtctgtgtgtgtgttgaagcagCATGCAGACAGATTGGCCTGGTGAGAGCTTGCTTTACTGTGCTGAAAGCTGCGTTCCTGTGGCCTTTGCACATGTCTCACCAGCCTGCCCTGCTCCAGTGACGTCTTTGGGGAATCAGCTTGAACATATGCGTGTGTCTGATGGGGAAGTGTGTGCTTGCATACAATTGAGAAAGTATCAGAAAGAGTCAGATTACTGGCTTGAGCACCAGAGGATTGACTTACTGTATGATTAGTTTGAGAATTGTTCAACTTCTGTAGCAATGCTATGCATGAAGCCAAATAAGACACATTTTAAGGCACAgatacaacaataaaataaatattacaaatcaaAGGACATGTCATAATTTCAATTATTTTACAACAAGCTCAGCCAtaaagttataattttttttaaatgggacaGTGATGGCAAAATTACTAATATGTACAGTAACCCTAGACCACTGGTCTTATGTGGCAtgggtatatttttggcaataatcaaaaatttattgtatgcaacataggctcattctgaaaacgtagacccatatatttatttcaag

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0001707 mesoderm formation biological_process
GO:0001708 cell fate specification biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0035775 pronephric glomerulus morphogenesis biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0072102 glomerulus morphogenesis biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0045165 cell fate commitment biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010470 regulation of gastrulation biological_process
GO:2000027 regulation of animal organ morphogenesis biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0039019 pronephric nephron development biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0048389 intermediate mesoderm development biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097282

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060322 False 993 lncRNA 0.40 2 24290643 24292159
TCONS_00060321 True 1041 lncRNA 0.41 2 24290643 24292159

Neighbor

gene id symbol gene type direction distance location
XLOC_031052 si:ch211-137i24.12 coding downstream 19654 24262230 ~ 24270989 (-)
XLOC_031051 BX119902.1 coding downstream 31351 24252459 ~ 24259292 (-)
XLOC_031050 phf23a coding downstream 45425 24240318 ~ 24245218 (-)
XLOC_031049 plscr3a coding downstream 51910 24234466 ~ 24238733 (-)
XLOC_031048 senp3a coding downstream 59504 24220157 ~ 24231139 (-)
XLOC_031054 znf703 coding upstream 37824 24329983 ~ 24333684 (-)
XLOC_031055 NA coding upstream 115194 24407353 ~ 24414457 (-)
XLOC_031056 BX088551.1 coding upstream 197716 24489875 ~ 24489974 (-)
XLOC_031057 tia1l coding upstream 218460 24510619 ~ 24517768 (-)
XLOC_031058 trmt2a coding upstream 240242 24532401 ~ 24543526 (-)
XLOC_031041 NA non-coding downstream 204507 24076625 ~ 24086136 (-)
XLOC_031030 BX957257.1 non-coding downstream 520086 23768377 ~ 23770557 (-)
XLOC_031029 BX957257.2 non-coding downstream 532056 23757933 ~ 23758587 (-)
XLOC_031017 NA non-coding downstream 834409 23446244 ~ 23456234 (-)
XLOC_031060 BX537282.1 non-coding upstream 324432 24616591 ~ 24619088 (-)
XLOC_031070 NA non-coding upstream 1063210 25355369 ~ 25358064 (-)
XLOC_031072 BX537293.1 non-coding upstream 1134116 25426275 ~ 25426404 (-)

Expression


Co-expression Network