LOC110488532 (slbp)


Basic Information

Item Value
gene id LOC110488532
gene name slbp
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 467839 ~ 481286 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942659.1
GCTGGTGTCGGAAATGCACCGTTAACATTGGATGCCAATCGCCGTTAAACCCcatcgaagaagaagaagaagaagaagaagaggcagTAGCAAATGTCTTTTCGTCACAAGTCTAGACGAACTGACGCTGACTATAACGGAGATGAAAATAGGAATAGGGGCCCTTTGAAGCGGTATAACTACTGGAAACGTGTAGCTGATGGCAGTATGAGATCAAATGAGGACATGGACTCCACCAGTGATCTGAAGAAGAGTAATGTCAACCACAGACGCACTGATATCAGACCTGTTAGTTGTACCACTCCTGAAAGTGAAGGTCCAGTTCCCAGATGCATGGACTGGGAGCGTGAAGTGGAGACTGACGAAATGTGCTCAAGCGTCTGTTGTGACATGCAACGTTACAGGAGGAGGACACTGGCAACAGAGTTTGGTCCAAGGGAACAGAAGAATTCTTCAGGGAGCTCAGATTCCAGAGACTCTCCAGTCCCTGGTGAGGTcatggaggaggatgaggaagtcCTGATGAGGAGGCAGAAACAGATCACATATGGGAAGAACACACTCGCCTACGACAGATATATAAAGGAAGTACCCAAGCACTTGAGGCAGCCAGGAGTTCATCCTAAAACTCCTAACAAGTTTAAGAAATACAGCCGGCGCTCATGGGACCAGCAGATTAAATTGTGGAAGGTGAAGATTCACGCGTGGGACCCCCCAGCCCAGGAGGGCAGTGAGCTGCAGGCCATATATGAGGTTGACTTGGATGATGTCATGGATATTGAGCTAGACTTCCCTGAGCTGGATTCCGACTCAAGCGCACAGCCTCCTAAAGTCAGCAAGGCCTCTTCGTCTCAAGCAgACTCCTTCCAAGTAACTCCCTAGATGATGAAAATGGATACATCAGTTGACCTTGAAATGGCCTAAATGTCCTTGGTGGTTGAGAGGATAATGTGGAAAGGCCTGGGGTATTGATTTCCCCCAGCACCATGTTTGAAATGGATGCATCCACCAGTGATCACCTCTTTTTGGTGGAATGCAGTTTCTGGTAGAGACATGCCTCAGACCCATTCTCAGCTGTCTTTTGACAGCTATCACCCAGCAGGGCAAAAATTATTGAATGCTTAAAATACCAGGACAAATTGATGATAGGTTGAATTCAGTCAGTGACCTGAATTGTGTATCACATTTTTTTGAAATTGTGTTGTGAATGCTTGCATTGTATTTTATAGTTGATTGCCTTGTATGCTGTATCTTTATTGTGAGTAGATGAAGTGTTTTTgttcaattatatattttttatatataaactTTGAATACAA

Function

symbol description
slbp Predicted to enable histone pre-mRNA stem-loop binding activity and mRNA binding activity. Acts upstream of or within nervous system development and neural retina development. Predicted to be part of histone pre-mRNA 3'end processing complex. Predicted to be active in cytoplasm. Is expressed in several structures, including digestive system; immature eye; musculature system; nervous system; and pleuroperitoneal region. Orthologous to human SLBP (stem-loop binding protein).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0003729 mRNA binding molecular_function

KEGG:

id description
K18710 SLBP; histone RNA hairpin-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942659.1 True 1319 mRNA 0.45 9 467839 481286

Neighbor

gene id symbol gene type direction distance location
LOC118938770 LOC106604976 coding downstream 162859 644145 ~ 649142 (+)
LOC110512013 ctbp1 coding downstream 250792 732078 ~ 751620 (+)
si:ch211-255i20.3 LOC106604974 coding downstream 269106 750392 ~ 760694 (+)
LOC110488511 rnf212 coding downstream 281604 762890 ~ 770746 (+)
LOC110488542 NA coding downstream 626503 1107789 ~ 1116632 (+)
G1202022 NA non-coding upstream 12196 455444 ~ 455643 (+)
G1202018 NA non-coding upstream 17233 450384 ~ 450606 (+)
G1201929 NA non-coding upstream 164223 269868 ~ 303616 (+)
G1201897 NA non-coding upstream 232958 228573 ~ 234881 (+)
G1201863 NA non-coding upstream 239292 25778 ~ 228547 (+)
G1202455 NA non-coding downstream 153415 634701 ~ 634975 (+)
G1202481 NA non-coding downstream 172431 653717 ~ 654166 (+)
G1202483 NA non-coding downstream 178325 659611 ~ 659818 (+)
G1202488 NA non-coding downstream 190422 671708 ~ 671983 (+)
G1202497 NA non-coding downstream 202297 683583 ~ 683847 (+)
G1202826 NA other downstream 459216 940502 ~ 941174 (+)
LOC110488551 LOC106604955 other downstream 2670418 2837214 ~ 3160873 (+)
G1205631 LOC106611372 other downstream 2693216 3174502 ~ 3175230 (+)
LOC110488581 LOC106611927 other downstream 3846267 4327546 ~ 4477610 (+)

Expression


Co-expression Network