LOC118938770 (LOC106604976)


Basic Information

Item Value
gene id LOC118938770
gene name LOC106604976
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 644145 ~ 649142 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943653.1
ACAGGAGTTGAGCAAGGGAGACCAACATCCAACAGTGAACCATCACCTCCTACCAGCCGTGTGTAACATTGACCAGAGCAGTACAGCCGTAGGGGTGGCAACGCAAGCTGTGCAGGAATACCGCACCAGACATTAGACTATTTTTCTCAAATTGTATGCGATATTATGTCATCGGTTGAAAGATAAGCTTAAATTTACTGTCTTGGTGCTAAATCTCTGATAGTTCAGAAGAAGAGAACGTGCTCTTCCGCCTGAAGAGAAGTCATGAATAGAGAGGTTCAGGGGGGAGATCTCTCAATCGCTTCTCCGACGGCGTCTTGTGTGGCTGCCCAAACAGCGGTGATCGTCGTGGCCGGTCCAGAAAGCATGGACAATCACTGCGAGAAGCGGCTCTCTACCAACGAACTGTCGGTGTTTTCCTGTCCAGGCGGTATAGACATACTGCAAGGGGACAGCCGAAACAACTCTCCACGTCAAGAACCAGCTCCGATAGCAATTCCAACGGTTCACCGGACCACCGCGTTTTCTGTTTTGGACATTTTGGACCCAAATAAGTTTACGAGCAAAAAGCTAAATCCTAACCGGACCGGCAGTGAAATCGCCTTCGGGACAGAGAACCGTGGAGGTGACGACTCGAATCATGCTGTAGATCATAAATCTTATGCAGAAGACTATGAATGTAAAAAATATACAGCACTAAATGAGGGGCTGGTGTACAGATCGGACGAATGCGAGAATGATTTCAACAGAGACTCCCACTCTGACAGCGAGATGCAGGATGACTTGTTTAGTGAGGAGAGCAGCAGTGGCCTGACTGAAAATACCCAGGGGGAACTGGGCCACCGTGAAGACGACGACAAGGAGAGCAAGAGCCCAAGAAGTCCTGACGGACAGCAAACGCAACAGTCAGGGTCGAATGGACAAAGTCATCAAGGAAAGCCGAAGCGAAAGCGCTCTGGCTCCGATTCAAAGTCGGGTAAGCCACGAAGGGCCCGGACAGCATTCACTTACGAACAACTTGTTGCACTGGAGAACAAATTCAAGTGCACCCGATACCTCTCCGTGTGTGAGAGGCTAAATTTGGCACTGTCACTTAGTTTGACTGAAACTCAAGTCAAAATCTGGTTCCAGAACCGACGGACCAAGTGGAAGAAGCAGAACCCTGGCGCAGACACCAGCGCCCCGACGGGCGGGGGGCCGAATGGCCAGAGCAATGGACTAGGGGGCCTGAGTCCGCTCAGCCCGTCTCCTCCCATGAGCGGCCATCTGTCAATGCACACGAGCTATGGTCACGGGCCAGGCGGGTTAGTCTGCACCACCCAATTACCCTTTCTGCCAAGTCATGCGGTACTGTCACCTTTCATGTTGGGATCTCAGACCTACGGAGCGCCTGCGTTTTACACTTCACACCTATAAAGACATGGACATACGTGTGGTTTTACGCCCAAACATTATTTGTTAATTATTAGTTTTCAGAGGCGTCTTAAATTAACCGATATTATCAAACGAATTGACTCCAATGAAATATGAACTTAATAACCATATTACACATACGGTTTAAGAGAACTAAAGACATGCCCTTACCTAAAGACTAAAATGCACTTGACGCAAGATGGGAAGAACTCTGATGAACATTTCATGTTGCTGTTTCGTCAAGGACATTTAATGCTCGAAGAAAACTTACCTTTACCAAGGgaataatattttttattatgctaatgttctatttgtttttcattttgaTAGAATGTGAATACTCGTGGTCAAAATGTATATAGGCCTACAAATGTTGACAAATATATGTCTAGCTTCAAATTTCGAATGCAGTTCATAAATATTAGAGCGTTTAAAAAATACATGTAGGCCTATCAATATCGTTCATTTACATCTGGAATGGCTTGAAATATTGTAATTACTGTGTAACTAAACTGTGAAAGTTAAATATGATTGTTTTCATATAAGTTGTCGCTactaatttattttatatagtgaCCTGAGAATATTTGGCTGTAATGAATACTCACTTCATCTGGATTCGTCTTTGATAAGAcaaagtaaaataataataaactatAGGCTACCATTTACAAACGAATAAGCTACTTTAATAGATTCAATACATTAAATACTGTTTCTTATCAGTCGATCATTTTTTTCCCTTTTCCTCCAAATTAAAGGACATTTTGGAACTGAACACAGAGTTTGTACCCCCTTTTTAAGAAATGTTTAACTCTTATTTATTTGACCAGTTATTTATGTTGGCCAACCGACGATATTATGTTGCATTTGTTTTCTAGCAAAAAAAGCTACAGCCTATattgaatgttttttttgtgcGGAAAAGGATTAGTAGACATCGAAAAATACAGTAGCACAACCATAGGCCTATTACTGGATCCATCATGGCGAATAAAAGCGTAACTTTTATTAATTAAATGTAATTACTTAATGgataatggatttattgatatAGGTTTTATTGATACGAAATCTGAATAAatttgatgaggaaaaacactCACTGGTAACTTAAACGGCATCCCTGTGTAAAAGAGGGATTTTGACTTCACAACTCTTGAGAAACGAGTTTCATTGTGGGCGAACGTCATGCCAAATTAAGGATAGATACAGGCTACGAAATGCGCTTGTGCATAAAACACCCTTTTAGGTTATATAATATTTGAATGAGATCATAATTAAAAGTCTGGGATAAGGAGACGCATTTGAATAGGGCCACTTTAGAAGTGCTGAAAATCCAGTCAATAGTGCACGTTTTGCACTATCGATGCAAGTTGTAGGGCAGGCATATACAATATTTAAAACTATAGTTTCGTCGAGTTTATAAGGACAAAAGTGACATGGATACAGCATTTATTTATATTCCTTTTGCACCTGATGACTATTTCGCTTCGGATCATAGTCTGTATTTATACCGTGATGAAATGGCATATGCCAGACATTAGGGAACGTGCTCCTGGAACCATTCTAGAATTTCACATGTAGGTAtgactaaacacaaatgcactATACGACGTAGCCTGGAATATAACCTCTACTTTGTAGATAGTCTAAACAACTTTCCAGATTTCGGGATTATTTAGAACATGGGACATTTCTTGAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09309 NKX1; homeobox protein Nkx-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943653.1 True 3121 mRNA 0.41 2 644145 649142

Neighbor

gene id symbol gene type direction distance location
LOC110488532 slbp coding upstream 162859 467839 ~ 481286 (+)
LOC110512013 ctbp1 coding downstream 82936 732078 ~ 751620 (+)
si:ch211-255i20.3 LOC106604974 coding downstream 101250 750392 ~ 760694 (+)
LOC110488511 rnf212 coding downstream 113748 762890 ~ 770746 (+)
LOC110488542 NA coding downstream 458647 1107789 ~ 1116632 (+)
LOC110488544 LOC106604961 coding downstream 1308174 1957316 ~ 1961986 (+)
G1202455 NA non-coding upstream 9170 634701 ~ 634975 (+)
G1202022 NA non-coding upstream 188502 455444 ~ 455643 (+)
G1202018 NA non-coding upstream 193539 450384 ~ 450606 (+)
G1201929 NA non-coding upstream 340529 269868 ~ 303616 (+)
G1201897 NA non-coding upstream 409264 228573 ~ 234881 (+)
G1202481 NA non-coding downstream 4575 653717 ~ 654166 (+)
G1202483 NA non-coding downstream 10469 659611 ~ 659818 (+)
G1202488 NA non-coding downstream 22566 671708 ~ 671983 (+)
G1202497 NA non-coding downstream 34441 683583 ~ 683847 (+)
G1202503 LOC107557686 non-coding downstream 46273 695415 ~ 699131 (+)
G1202826 NA other downstream 291360 940502 ~ 941174 (+)
LOC110488551 LOC106604955 other downstream 2502562 2837214 ~ 3160873 (+)
G1205631 LOC106611372 other downstream 2525360 3174502 ~ 3175230 (+)
LOC110488581 LOC106611927 other downstream 3678411 4327546 ~ 4477610 (+)

Expression


Co-expression Network