LOC110512013 (ctbp1)


Basic Information

Item Value
gene id LOC110512013
gene name ctbp1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 732078 ~ 751620 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942663.1
tcagctcTCCCACTCCCATAAAATGCAGTGACAGTTGCattctgtgtgtgcatgcatgtgtgataGAGATAGTCGAaatagaaagtgagagagggagggagagtgaaggagCAAAGGGGAATGCTTGCCACTGAGGGGCAGGGAAAAGGAATAAGGAAATTGAAGAAGCCGCCGTATGCTGtggatttttatgaatatctTGCTTGAAGTGAATATAATTTTTTGGGAAAAAAGATGGGAAGCTCGCATTTTCTGAACAAAGGCTTGCCGTTAGgcaTTCGACCGCCTATCATGAATGGGACCATGAACCCACGGCCCCTGGTGGCCCTGCTGGACGGGCGTGACTGCACAATAGAGATGCCAATCCTTAAAGACGTGGCCACTGTGGCCTTCTGTGATGCCCAGTCCACCCAGGAGATCCATGAGAAgGTACTGAACGAGGCTGTAGGAGCTCTGATGTACCACACCATCACGCTAATGAGGGAGGACCTGGAGAAATTCAAGGGCCTTCGGATCATTGTCCGCATAGGCAGCGGCTTCGACAATATCGACATCAAGTCGGCTGGAGATTTAGGGATAGCAGTGTGTAACATGCCAGCAGCGTCGGTGGAGGAGACAGCGGACTCCACACTGTGTCACATCCTGAACTTGTACCGACGAACCACGTGGCTTCACCAGGCACTGCGCGAGGGCACCAGGGTACAGAGCGTGGAGCAGATCAGAGAGGTGGCGTCCGGTGCGGCGCGGATGCGCGGGGAGACACTTGGCATCATCGGCCTCGGCCGTGTTGGCCAGGGTGTAGCACTCAGAGCCAAAGCGTTTGGGTTCAATGTGATCTTGTATGACCCATACCTGTCTGACGGGGTGGAGCGAGCCCTGGGCCTGCAGCGTGTCAACACCCTCCAGGACCTGCTTTTCCACAGCGACTGTGTCACCCTCCACTGCAGCCTCAATGAGCACAACCACCACCTCATCAATGACTTCACcatcaaacagATGCGCCAGGGTGTGTTCCTGGTTAACACGGCCCGAGGGGGGCTCGTGGATGAGAAGGCCCTGGCACAGGCCCTGAAAGAGGGGAGGATACGAGGGGCAGCCCTGGACGTCCACGAGACAGAGCCCTTCGGCTTCAGCCAGGGACCTCTGAAAGATGCTCCTAACCTGATATGTACTCCCCACGCTGCCTGGTACAGCGAACAGGCTTCTATTGAGATGAGAGAGGCGGCAGCCCGGGAGATCCGACGAGCCATTTCAGGTCGTATTCCAGACAGCCTAAAGAACTGTGTGAATAAAGAGTTCCTGTCCCAGACTACTCACTGGGTCAATATGGACCCTGCTGTCATTCACCCTGAGCTCAATGGGCCCTACAGGTACCCTCCTGGTGTTGTGAGTTTGGCCTCTGGGGGGCTCCCTCCGCCTATAGAGGGAATCGTTCCTAATGCCGTGCCCATAACACACAGCCTGCCTAGCGTCGCCCACCCCTCTCACGCCCCTTCGCCGGGCCAGCCAGGCAAagcagagtcagacagagagcagcACACCAATGACCAGTTGTTGTAGCCCCGCCCCACAGTGCTCTCTGTCCAACCAAAATAACTCTACTCGTCTTCATTCGTTCGAAGAGGAATGGAGTTGAAGCCTCATAGGTTTCAAACAGCTGCCATAAAACAGACAGACTCACAGAGGTCTATTACAGTTCATCTGGTCCAACCATAGTGGTAATCtttttcaaacatttttttttgcagaaaaaaaaaataataatgtggaTTTGGAAAGAGAAAATACAAATATCTTTTAAAGAGAATCCTGCTGTTTAGACTGTAGTTTGACCTAGTAAAGTGGACTGTTGCTGTGTCCTATGGGTTCATCGTTAAAGCAGAAGTAGTTGATTATAACATGAATAACCTGTTTGTGTACAGTTTTTAGAACTATGAAAACAATATTTATATTGCAGTCTAATAGAAAAAAGGGTGAAAACTAACCAACTGATTTTTAAAAGTTTTTATATATTCCCCAACAAGCCCCAAAAGAGGAAGCTTTTGCACAACTTCTCAGGAAATGTAATTTCTCTAGTTATTTTCCATTTATGCCAGATAGTGCTTTCTTTTtctacctgcctgcctgtttTGTTTATATTAGCAAACATACtaacccataagagtctaagccGGGGGAGGaggtgggttctactaagctatatggaattgttttaagaaggtcacaCCAAAgataattttgctatttgattttgaattttaagaccccttgaagtatcaacaaaaattttgatttaaaaaaataaaatcattttAAGACAAACTTCCTTTCGATTTTTTgtggggggactatctgttgttccatctGTTATTCGATGCGTTTGTATGGACTAATAAGCAGTAAGGCTAAATAAAAATTGTAgatatcaaaaaatatatatatatatatatttgatgtaaaaaaatgtatttagccTTACttctattagcccatacaaatgcattgaTTAACAACATATGCACTACATGCAAAAACAGATAGTCACCCCCCAAAGAATCTAAAGAAAGTGTCTGCCCTATACATGAGAGGCCTGTGAGTCTTCTGAGGCCTGTGAGCAAAACAACCGACTTACTGATTGatgtacagtactagtcaaaagtttagacacatctACTTATTCAatggcttttctttatttttacattttccacattgtagaataatagtgaagacatacaaactattaaataacacatttggaatcatgtaataaccaaaaaagtgttaaactaataaaaatatattttata
>XM_036942664.1
tcagctcTCCCACTCCCATAAAATGCAGTGACAGTTGCattctgtgtgtgcatgcatgtgtgataGAGATAGTCGAaatagaaagtgagagagggagggagagtgaaggagCAAAGGGGAATGCTTGCCACTGAGGGGCAGGGAAAAGGAATAAGGAAATTGAAGAAGCCGCCGTATGCTGtggatttttatgaatatctTGCTTGAAGTGAATATAATTTTTTGGGAAAAAAGATGGGAAGCTCGCATTTTCTGAACAAAGGCTTGCCGTTAGCGAATGACGGTGATGAGGGCCTGTACGGGTGTTTGGAGTATATCCTtcccgtccgactcattaaagaaagaTTCTTCATCtaatttgaggcaTTCGACCGCCTATCATGAATGGGACCATGAACCCACGGCCCCTGGTGGCCCTGCTGGACGGGCGTGACTGCACAATAGAGATGCCAATCCTTAAAGACGTGGCCACTGTGGCCTTCTGTGATGCCCAGTCCACCCAGGAGATCCATGAGAAgGTACTGAACGAGGCTGTAGGAGCTCTGATGTACCACACCATCACGCTAATGAGGGAGGACCTGGAGAAATTCAAGGGCCTTCGGATCATTGTCCGCATAGGCAGCGGCTTCGACAATATCGACATCAAGTCGGCTGGAGATTTAGGGATAGCAGTGTGTAACATGCCAGCAGCGTCGGTGGAGGAGACAGCGGACTCCACACTGTGTCACATCCTGAACTTGTACCGACGAACCACGTGGCTTCACCAGGCACTGCGCGAGGGCACCAGGGTACAGAGCGTGGAGCAGATCAGAGAGGTGGCGTCCGGTGCGGCGCGGATGCGCGGGGAGACACTTGGCATCATCGGCCTCGGCCGTGTTGGCCAGGGTGTAGCACTCAGAGCCAAAGCGTTTGGGTTCAATGTGATCTTGTATGACCCATACCTGTCTGACGGGGTGGAGCGAGCCCTGGGCCTGCAGCGTGTCAACACCCTCCAGGACCTGCTTTTCCACAGCGACTGTGTCACCCTCCACTGCAGCCTCAATGAGCACAACCACCACCTCATCAATGACTTCACcatcaaacagATGCGCCAGGGTGTGTTCCTGGTTAACACGGCCCGAGGGGGGCTCGTGGATGAGAAGGCCCTGGCACAGGCCCTGAAAGAGGGGAGGATACGAGGGGCAGCCCTGGACGTCCACGAGACAGAGCCCTTCGGCTTCAGCCAGGGACCTCTGAAAGATGCTCCTAACCTGATATGTACTCCCCACGCTGCCTGGTACAGCGAACAGGCTTCTATTGAGATGAGAGAGGCGGCAGCCCGGGAGATCCGACGAGCCATTTCAGGTCGTATTCCAGACAGCCTAAAGAACTGTGTGAATAAAGAGTTCCTGTCCCAGACTACTCACTGGGTCAATATGGACCCTGCTGTCATTCACCCTGAGCTCAATGGGCCCTACAGGTACCCTCCTGGTGTTGTGAGTTTGGCCTCTGGGGGGCTCCCTCCGCCTATAGAGGGAATCGTTCCTAATGCCGTGCCCATAACACACAGCCTGCCTAGCGTCGCCCACCCCTCTCACGCCCCTTCGCCGGGCCAGCCAGGCAAagcagagtcagacagagagcagcACACCAATGACCAGTTGTTGTAGCCCCGCCCCACAGTGCTCTCTGTCCAACCAAAATAACTCTACTCGTCTTCATTCGTTCGAAGAGGAATGGAGTTGAAGCCTCATAGGTTTCAAACAGCTGCCATAAAACAGACAGACTCACAGAGGTCTATTACAGTTCATCTGGTCCAACCATAGTGGTAATCtttttcaaacatttttttttgcagaaaaaaaaaataataatgtggaTTTGGAAAGAGAAAATACAAATATCTTTTAAAGAGAATCCTGCTGTTTAGACTGTAGTTTGACCTAGTAAAGTGGACTGTTGCTGTGTCCTATGGGTTCATCGTTAAAGCAGAAGTAGTTGATTATAACATGAATAACCTGTTTGTGTACAGTTTTTAGAACTATGAAAACAATATTTATATTGCAGTCTAATAGAAAAAAGGGTGAAAACTAACCAACTGATTTTTAAAAGTTTTTATATATTCCCCAACAAGCCCCAAAAGAGGAAGCTTTTGCACAACTTCTCAGGAAATGTAATTTCTCTAGTTATTTTCCATTTATGCCAGATAGTGCTTTCTTTTtctacctgcctgcctgtttTGTTTATATTAGCAAACATACtaacccataagagtctaagccGGGGGAGGaggtgggttctactaagctatatggaattgttttaagaaggtcacaCCAAAgataattttgctatttgattttgaattttaagaccccttgaagtatcaacaaaaattttgatttaaaaaaataaaatcattttAAGACAAACTTCCTTTCGATTTTTTgtggggggactatctgttgttccatctGTTATTCGATGCGTTTGTATGGACTAATAAGCAGTAAGGCTAAATAAAAATTGTAgatatcaaaaaatatatatatatatatatttgatgtaaaaaaatgtatttagccTTACttctattagcccatacaaatgcattgaTTAACAACATATGCACTACATGCAAAAACAGATAGTCACCCCCCAAAGAATCTAAAGAAAGTGTCTGCCCTATACATGAGAGGCCTGTGAGTCTTCTGAGGCCTGTGAGCAAAACAACCGACTTACTGATTGatgtacagtactagtcaaaagtttagacacatctACTTATTCAatggcttttctttatttttacattttccacattgtagaataatagtgaagacatacaaactattaaataacacatttggaatcatgtaataaccaaaaaagtgttaaactaataaaaatatattttata

Function

symbol description
ctbp1 Predicted to enable NAD binding activity; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; and transcription corepressor activity. Acts upstream of or within retinoic acid receptor signaling pathway. Predicted to be located in nucleus. Orthologous to human CTBP1 (C-terminal binding protein 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0051287 NAD binding molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K04496 CTBP; C-terminal binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942663.1 False 2810 mRNA 0.45 9 732078 751620
XM_036942664.1 True 2899 mRNA 0.45 10 732078 751620

Neighbor

gene id symbol gene type direction distance location
LOC118938770 LOC106604976 coding upstream 82936 644145 ~ 649142 (+)
LOC110488532 slbp coding upstream 250792 467839 ~ 481286 (+)
LOC110488511 rnf212 coding downstream 11270 762890 ~ 770746 (+)
LOC110488542 NA coding downstream 356169 1107789 ~ 1116632 (+)
LOC110488544 LOC106604961 coding downstream 1205696 1957316 ~ 1961986 (+)
LOC110488545 LOC106604959 coding downstream 1559447 2311067 ~ 2321285 (+)
LOC110488546 LOC106604958 coding downstream 1589377 2340997 ~ 2516222 (+)
G1202512 NA non-coding upstream 26753 705070 ~ 705325 (+)
G1202503 LOC107557686 non-coding upstream 32947 695415 ~ 699131 (+)
G1202497 NA non-coding upstream 48231 683583 ~ 683847 (+)
G1202488 NA non-coding upstream 60095 671708 ~ 671983 (+)
G1202483 NA non-coding upstream 72260 659611 ~ 659818 (+)
G1202602 NA non-coding downstream 19397 771017 ~ 771618 (+)
G1202607 NA non-coding downstream 21299 772919 ~ 773131 (+)
G1202609 NA non-coding downstream 22107 773727 ~ 774000 (+)
G1202616 NA non-coding downstream 25689 777309 ~ 777663 (+)
G1202625 NA non-coding downstream 29540 781160 ~ 781471 (+)
si:ch211-255i20.3 LOC106604974 other downstream 7911 750392 ~ 760694 (+)
G1202826 NA other downstream 188882 940502 ~ 941174 (+)
LOC110488551 LOC106604955 other downstream 2400084 2837214 ~ 3160873 (+)
G1205631 LOC106611372 other downstream 2422882 3174502 ~ 3175230 (+)
LOC110488581 LOC106611927 other downstream 3575933 4327546 ~ 4477610 (+)

Expression


Co-expression Network