LOC110488511 (rnf212)


Basic Information

Item Value
gene id LOC110488511
gene name rnf212
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 762890 ~ 770746 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035891.1
tttGATAGAAATCTATCTCCATATTTTTATCCAAAACGTCAATAATGACGTGGCCGGCCAATCAGAAAGCGATCCAAAATCAAAACAAACCGAAAATCTGAAACTAGCTAATAAGCTAAAAGCCAGTAAAACGACACGGAAAGTATTTTGAAAGCTTGCTAATTCAACAGAGAAACAAAGAAACCGTTATGTAAGTCAGATGTTGATCCGTCTTCAATAAAATATCCGTTACTTTGAACATTTTGCTAATAGCTTAGCTAGCTGTAGAAAATGCCTTACTGGATCTGCTGTAACTCCTGCTTCAACCTCCCTGGTCCTGACTGCCAACTAGCTGTTGCCAGCTGTGGTCATGTCATCTGCAACGTGTGTTTTCAGAAAGGTAGCAAGTTCAGTCTCTATTTGATTGTGCTAATGCACCCTGTTATGTCTCTTGTGAAATTAAGTTCAACATATCATTGCCTAACTACTGATGATATAGGCCTAACGTCATATGAACCAAAAATATATTACTTTGTCAGTTTGCTGCAGTTCTGTCTTTTTCAAAACAGTTACAGGCTAAACTTGAAAACACTGTCCTCTGCTGGTCTTTGTCTGATGTTACAGAAACAGTTTGGCCAAAAGAAAAAATGCTCCATGCAGTTTGAGGGCCTCCTAGTAGTGTAATACTCTGCTATTCTATTGTATATGGTATTGTTCCAATaaacacattttcatttttcTTTCAGGCAAACAAGGGGAATGCATGATATGTAAAGCAAAATGTCAAGTTACTCCTCTCTCAGACAAAagtagtgcagaagtgAAGGCCCTCTTCTCTGACATCAATTCTGTTGCAACCAAACACTTCACAGAGATAAGCAAGGTGTTACTATTCCAGGCAAGGCACCAAAAGAGGCTGTTGGTGCATTACCAGAAGAGGAATGAAAAGTTAGAACAAGTTTTACTCAAGATGAAGCAAGAAATTCAGCAAATGTCCAAAAAAATTACAGCGCAGAATGCATATATTGCCAAGCTGGAGAGCACTCTTCAGCATCAAAGGTATTTATCTTTATAGGTGTTACTGCGTTCTACTCACAAGGTGTCACTATTGTCAGCTTTGTTTCTCAAACATGAGACCATGGAGGGGACTAATTTGTTATCAACATATTGTTTATTCAGATTAACCCGTTAGTATTAATGGCACCTTGtgactctctgctgctctctccctcgctccgcTGACACTAATGTCGTGTTCAAATCAACTGGGAAatcggaaatctctgacttccgacttcagtgcgttcaagacaactgagaaATTAGAAAAAAACTAGATCCGACTCGGAAAAATAATTTTGAACTGTCACCCAAttcggaattccaagttggaaaCTCTgtcatctttctagagctccgacttaaCGACcagaagatcactgacgtcatgatttggccttgtttattcccccagttgtcttgaaagcacaatgaccatcagatgcaggtaccatcaATCCAGTAAACAAATAAAGCAAATTATTTCAATTTATGCTCAGCTGTGCCTCGCAAGTGCTACACCAATTGAtttattttgttatcaaagctggagttttgaaatataatatggtctgagaataacaatattggcaggccaggcatataaccaatatgctgtgatactgtattaggcctactgcacaaacctcattttTATTAGGTTAATGTACATTTTTAAACACAACTTAAAAAATGTATCTTGAAAAGTTTGGTGACCACTGGCCTAGCTCATATTAGCTTTAGCTGCTGTTTGGTTTTGCCCTGCAGTAGCACACCCGTCTCACCTGAATAAGCCGGGGAGGCTTGTGAACATTATGTCTGAGTGAGCATTTCCATAATCTTTCTTCCTGGGTTCTATGAGAATTAAATGCGACATGCCATGTTATGTGATTTCCCCTCAGGGCAGAAAACATTGAAGTGGATGGCAGGGGTCTGTTTaggaaagtatgtgaaccttttCAATTCAAATATGGTTCATTTTGACATTGAATTATTGCACTACAAATGCTTACTTTGTTTaatattaaattaaat

Function

symbol description
rnf212 Predicted to enable SUMO transferase activity and metal ion binding activity. Predicted to act upstream of or within reciprocal meiotic recombination. Predicted to be located in synaptonemal complex. Orthologous to human RNF212 (ring finger protein 212).

NR:

description
PREDICTED: probable E3 SUMO-protein ligase RNF212 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035891.1 True 2073 mRNA 0.39 5 762890 770746

Neighbor

gene id symbol gene type direction distance location
si:ch211-255i20.3 LOC106604974 coding upstream 2263 750392 ~ 760694 (+)
LOC110512013 ctbp1 coding upstream 11270 732078 ~ 751620 (+)
LOC118938770 LOC106604976 coding upstream 113748 644145 ~ 649142 (+)
LOC110488532 slbp coding upstream 281604 467839 ~ 481286 (+)
LOC110488542 NA coding downstream 337043 1107789 ~ 1116632 (+)
LOC110488544 LOC106604961 coding downstream 1186570 1957316 ~ 1961986 (+)
LOC110488545 LOC106604959 coding downstream 1540321 2311067 ~ 2321285 (+)
LOC110488546 LOC106604958 coding downstream 1570251 2340997 ~ 2516222 (+)
LOC110488547 LOC100136420 coding downstream 1844611 2615357 ~ 2616987 (+)
G1202514 NA non-coding upstream 6834 708549 ~ 756056 (+)
G1202512 NA non-coding upstream 57565 705070 ~ 705325 (+)
G1202503 LOC107557686 non-coding upstream 63759 695415 ~ 699131 (+)
G1202497 NA non-coding upstream 79043 683583 ~ 683847 (+)
G1202488 NA non-coding upstream 90907 671708 ~ 671983 (+)
G1202602 NA non-coding downstream 271 771017 ~ 771618 (+)
G1202607 NA non-coding downstream 2173 772919 ~ 773131 (+)
G1202609 NA non-coding downstream 2981 773727 ~ 774000 (+)
G1202616 NA non-coding downstream 6563 777309 ~ 777663 (+)
G1202625 NA non-coding downstream 10414 781160 ~ 781471 (+)
G1202826 NA other downstream 169756 940502 ~ 941174 (+)
LOC110488551 LOC106604955 other downstream 2380958 2837214 ~ 3160873 (+)
G1205631 LOC106611372 other downstream 2403756 3174502 ~ 3175230 (+)
LOC110488581 LOC106611927 other downstream 3556807 4327546 ~ 4477610 (+)
G1207553 NA other downstream 4151395 4922141 ~ 4922560 (+)

Expression


Co-expression Network