LOC110488542


Basic Information

Item Value
gene id LOC110488542
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 1107789 ~ 1116632 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560775.2
gggtaatgtcttggtaccattttgtaccaaggacgagataagagctttgtttaggagaccaaactgaacgataatttatagccaactcTGTCTTCTTTGGGGATACTCCTCTGAAGTAAAGTATTTTCTTTGTGgaagttcctaagacctgtgtTTTGTCATGTCGTCTTGagagggggtggatctttgctataaaggaacccatttgccattatgttgggcactctcaacttttcattagagatactgaactgttgaaagtcaaaatgctattgaaaaagcttaattattattaaaggtgaagattaagcataactctgactcgtgtgtgatttgctctctcatcatttggtaattaaggaaatttccacgacatttgGCGACGGGGATAGGATGTGAATCTTCACTCGGTGACCGCTCCTGATGACCTAGGTAATCGTGCACAAGGGATCCCTCAAACTCGGGATCTCAGGGAGACCACACTTCAAGAACGGAGCAGATGGACCAACCTAAGATCGGAGAGGCagcgagccgagtggataccacatcccgaacatagtaaaaaaaagatttaaaaaaaaaaagaggtgaGATGAGCAAACCACATTTGAAGTTGAGTTGGATAGGACTTAGAGCTTGGTGAAGCCCTAGTGGAAGAAGGACCTCattctgtgtatctgtgtgattGTCTAAGTGACTCTCAGAGGTggtgaattccaattattttaaatgtgctagccaggtatgcCCTGGGTTACTCTGTGTGAGTATTTTGTTAGGAGCGTTCTGTGTGGGCGCGGTAGGTTGAATCTGTGTGGGTTACCTTtttatgttctgatgttctgtgtggacatctgaccagttctgtgtgagcatctgaccaatcctgtgtggGTGATCAGTAAAATTCTGTGTTAAGTACTTAAGGAattcctgtttaaaaaaaaatctctccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagggggagtgagattgtgtgtgtgagactaaGGAGCCATGGGCGCGCGCGAGTGCAAAGAACCAGGCATTCCGGACCCTCCGACTGGAGCCTTGAAGGTTATGGTAGATAAATGGGGTAGGGATATTCTGGAACAGGTACTTCTATGGCATAGAGAGGGTGGTTTTCCTTTGACAGGGACACTAAGTGTGACGCTGTTAGATGAGGTAAGACAGAGATTGGTAGAGAAGGAAGGTAAACTAGGAAAAAAGGATCAAATTGACTGGGTGAAATTCAGGAAATGGGAAAGGGAAGCTGACAGACGGAAGAAAAGACAGGACACATTTTGGGGAAAACCCTGTCAGAATATGGTAGTTCAGACTGAGGAAGGAGAAAAGAAGGGGAAAGATGAAACAGTGAGAAGGAATAGGAAGGATGATGGATGACAGAGACTGTCCCCCTCCCTACTGTACTCCTCAAACTCTCTACCCAGTGTTGCCggacctccctcctcctcaggcGCCTCCTGCTGATCCGCTGGATGCAAGACCACTACAACCTGCAACCCCACCCCCTGTCTCTCCCAACACCACGGTGATTGATCGTCTGGCACGGAGCCTGGCTGAAGTCCTGACAGGGCCTGGAGTGACTCCGGCCAGTCTCACTGGAGGCGCAGTGGGGGGAGCACGCCAGAAAGGAAAAAAAATCAACAATCCTTTTCTCAAGGCTCCTCCACTCAGCTCCAGTGAGGACGGAGGGGCACCCCAGCTGACTCCCCCGTTGAAGGACTGTCTATGGACCAGGACGGAGAGGCGTGTCTCTACCCCCTTCCAATACGACCCAGCATCAGACATGTATCATCAATACCCTCTGATGGCCTGTCCTAACCCTCAGCCTCGACCTGATGATGCTAATGCTGCTGCCGCCGCAGCATGGAACCCCATTGTGTATGTCCAGAGGACGTggagacatgatgaaatcaaagACATTGTAGAGGACCTAGTAGACCCAAGTAAGGACGCTGTGAAATATTCAGCAGAGATGAGGGTATTAGTGGGTCAGTACAAACCATCTGCTGCTGAGATAGCCCATATCTGTAAAAATAAACTGGGACTCAGGTGGATGTACAGGGACAGTTTGATTGCAACTACCTGTGGGCTGAGAATGGCGCATATCAGGACCAGATAACGGCGCTGCTGGTCAGGATTGTGGAGATGTATCCAACTAAGACTGACTGGACTGCTATCAGAGAATGCACTATGAAGAAAGATGAGGGCCTGGAGGCTTTCAGAAAGAGACTTGAGACCTGTTTCAGGCTACACAGCGGTATCAGACCAAACAAACATGCATATGGGGATCTGCTGAAAGACGCCCTAGTGAGGGGTCTGACACCGGACCTGGAGAAAGCTGCCTACCTGCATCAGTTGGGAGACTGAGCCATTAGCAACGGTGGTACAGCACTGCTAGCATGCTGAGAGACAACAGAGTACTCAGAAGGAAGAAAAAATAAAGGAAGAAAAAGTAAAGACACAGAAACTACAGGCTGCCCAGATGACGTTTTACCAGGAAGCAGCCCCAGCAGGGACAGGACGAGGGGCTGGAGTGCGCAGGTGCTACAACTGTGGGAAGCCGGGTCATTTTGCTGCTGACTGCTCTGAGCCAACGAATCCACAGAGGAACAAAGACAGGGGCGGACCGAGAAGAGGGGCCCGAGAGGAGGGggcaagaagaggaggaaaaggagcACATGCATGGACAGCCCCATTCCAACAACAGCCGTGGCAGCCACCTCCCAAGCAATGGCAGGTCAGGCCACCTCACAGGGTCCAGCAACAGCAACAGTGGGGACCACAAGGAGTCCCTCCAGGCAGAGGACAAACTGGAGCCTGGCAGACGGGGCCGCCGGCACAGACGACCCTGTACAATccaggacagggaggaggagtaTTGACATGATGAGAAGACAGGGACAGTTGTGCTAAAATCCTCAGAGCAACAAGAGCATTTGTTTTTAAAGTGTCACACCCTTCCGAGAGTAGAGCCAACAGTGGAGGCTTGCGTCAATGGGTGAAAGCGGCTCTACCCCAGCCACTGGTGGGGATCCTGCACAAACTGCAACCAGGTGACTGGGTGGTGGTGAAAGACCTGAGACGAAAGCATTGGAACCAGCAGAGGTGGACTGGACCATACCAGGTGATGCTGATTACCCCCACTGCTGTTCGCGTAGCTGAGAGGTCTACTTGGATCCACACCAATCACTGCAGGAAGGTGCTATACTGCCCACCAGACCCTGAGGATGGAGGACCAGAGATGCCGGAAGTCACCGACTAGATGGGAGGATCAGGCCCAGACTCTACGCATCATGTTTCTTGCTCTGGTCTTGAGCATTCTCATTACAGTTGCCATATGGACTGTGACTCAAGGACAACCGGTCCTGGAAAGACAACATGGTACGAACTCGACTGATAATCGTTCAGTCCCACTGCGGGACTTGAATAACAGCCACTCCAGCTCGAGCCAACGGGAGGCTCAGGACAGGAGTCCAGCAAACAATAGCCGCTCCCATATCGAAAGAAGAAGAAGGTCAATGCATCCACTGGATGAGCATCACAGTAGGAATCACGAGGGAAACACTTGGTGGTCACTGCTTAACTATACAGTAAAGACTGAACTGATGTTAGGAAATACCTACTGTTATGTATGTAGCTTGTTTCCACATTCAGCGATCtccccattcttacagtattcagTAGAGGTCAGCATTAAAGACACTCTATGTGCACTAGAGGCGCTCTTGTCCAATGAGAACACATGGGGTCAACCTTCACTAGGTAGAACACTGAGGGATAAATGCATTAATGGTAATTTGTCATCAACAAAATATTTACGGGGGGGATTTGATTGTTCACATTGGTGTAGTAGAATAATCTTAGAACCTAGATCCCGTGTACCAGAACCTATTAAAGTCCAACCCCGGCGAACCCCATTTAGGACCTGTCATTGTCACAATCCAAGCAATATTTCCATACCACAATTGAATGAATCCTATCTGGGAATGTCAACATGTGTCAATTATAGTGTTTTCCCAATAGGATGTAGCTGGAAGAAGGGAACATGCTGCTCTGGATACCCCATTAGACTGAGGGTGGGACACACCATTATTGATGCTGAAACTGACAATCGTTCTCCTCATCAATTTGGCTCGGCAACATTTACTGATCATTATTGGATTTGTGGTGATAAAGTTTATCTCTACCTACCCACAAATTGGACAGGGTGCTGTATTTTTGGTAAACTAAACATCTCCCTTGTGGTAATGCATAAAACTAATTCCTCTATTCCAAGCAGGTTAAGACTAATTAAGAGGGACATCTCGCAGTACAATAATGTCCCTAGTGACTCTCGACGATCCTCAAAATTAGAAAGGTTATGGCGTGGTTTAATCCCCTGGTATGGGGCATCGGAGAATGCACATGAGTTGGATAGGCTAGGATATCATTTGGAATCCCTGGTAAATTTGACCACTGCAGGGTTTTCTATGATAAGACCATAATTACAAGCCACTCAACTCATGGCAACACAAAATAGGGTGGCACTTGACATGTTGCTAGCACGTGAAGGAGGGGTGTGTCAAATTATAGGAGATCACTGTTGTACATTTATACCCCAGGGAGATGACAATTTGACTATTGTAGTGGAACATTTGAAAGAGCTTAGGGGTGTTCTCGAAAGGGAACACCAGCCTGACATCAACTGGAATCCGTTAGGATGGGTTCAGTCAGTGTTTGGTGCTTGGGCTGCGACAATTTTCCACTGGTTAATCTATCGTCTAATATTACTGATTGCTCTGTTGCTAATTATCATTTGTGTAAAGAAATTGTTTAATAAAGTGGTTGATGTTGTTCTTACTATGCCCTTGCTTGCAAATGAAGTAGGTATAGGTGAGGAATCTGAGATTGATGGTCAACAATCAGGTGAACACAGTGAAATATTCTCACTGGACAGTGTAGATAGAGAGGGTTCACTGTATATGAATGATTTCCCTGACCTATTCCCTATTCCTGACTATATCTCTGATAGTGGGGAACCCAATTCTAAGCATGAGGATTTAGAGGGATGACTGTCCTATAGGTTGTAATGATGCCTGTGTTTAGACAGGGTTTCTCTTGTAATTTTGGGAGCATTtatatgttttgttatttttatttttactcaaCAAATGTATTATTCTATATGTTTAAACAGGTGCAAGTCTGTATTATGGTATAAACATTGTAAACTTTCTGAAGGGTGAATAATTACATTGAAGGG
>TU1374339
CAGCTGACTCCCCCGTTGAAGGACTGTCTATGGACCAGGACGGAGAGGCGTGTCTCTACCCCCTTCCAATACGACCCAGCATCAGACATGTATCATCAATACCCTCTGATGGCCTGTCCTAACCCTCAGCCTCGACCTGATGATGCTAATGCTGCTGCCGCCGCAGCATGGAACCCCATTGTGTATGTCCAGAGGACGTggagacatgatgaaatcaaagACATTGTAGAGGAC

Function

NR:

description
uncharacterized protein LOC110492400 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560775.2 False 5287 mRNA 0.47 2 1107789 1116632
TU1374339 True 234 lncRNA 0.53 1 1109530 1109763

Neighbor

gene id symbol gene type direction distance location
LOC110488511 rnf212 coding upstream 337043 762890 ~ 770746 (+)
si:ch211-255i20.3 LOC106604974 coding upstream 347162 750392 ~ 760694 (+)
LOC110512013 ctbp1 coding upstream 356169 732078 ~ 751620 (+)
LOC118938770 LOC106604976 coding upstream 458647 644145 ~ 649142 (+)
LOC110488532 slbp coding upstream 626503 467839 ~ 481286 (+)
LOC110488544 LOC106604961 coding downstream 840684 1957316 ~ 1961986 (+)
LOC110488545 LOC106604959 coding downstream 1194435 2311067 ~ 2321285 (+)
LOC110488546 LOC106604958 coding downstream 1224365 2340997 ~ 2516222 (+)
LOC110488547 LOC100136420 coding downstream 1498725 2615357 ~ 2616987 (+)
zgc:66433 cb055 coding downstream 1503275 2619907 ~ 2658706 (+)
G1203022 NA non-coding upstream 35561 1071768 ~ 1072228 (+)
G1203021 NA non-coding upstream 36803 1070764 ~ 1070986 (+)
G1203007 NA non-coding upstream 45248 1061878 ~ 1062541 (+)
G1202982 NA non-coding upstream 57896 1049610 ~ 1049893 (+)
G1202973 NA non-coding upstream 65147 1042355 ~ 1042642 (+)
G1203072 NA non-coding downstream 2134 1118766 ~ 1119286 (+)
G1203079 NA non-coding downstream 8561 1125193 ~ 1125422 (+)
G1203111 NA non-coding downstream 28862 1145494 ~ 1145775 (+)
G1203173 NA non-coding downstream 72435 1189067 ~ 1190073 (+)
G1203174 NA non-coding downstream 75154 1191786 ~ 1192031 (+)
G1202826 NA other upstream 166615 940502 ~ 941174 (+)
LOC110488551 LOC106604955 other downstream 2035072 2837214 ~ 3160873 (+)
G1205631 LOC106611372 other downstream 2057870 3174502 ~ 3175230 (+)
LOC110488581 LOC106611927 other downstream 3210921 4327546 ~ 4477610 (+)
G1207553 NA other downstream 3805509 4922141 ~ 4922560 (+)
G1208884 NA other downstream 4787289 5903921 ~ 5907769 (+)
G1203063 NA non-coding downstream 3308 1113071 ~ 1113275 (+)

Expression


Co-expression Network