LOC110488544 (LOC106604961)


Basic Information

Item Value
gene id LOC110488544
gene name LOC106604961
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 1957316 ~ 1961986 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560777.2
TGCGGATGCGCAGGCAGAGAATGCTTCAGCCCGTTATTCCTCAGTATCCAGTCTCTCTCAGAGTTGGATCTCTCAGTGTTTTTATCGAGAAAGTGAAGGAAAACTCCAAGTGATATGCTACATACATTTAATTTTTTGTCAAGAACGAAATTGTACTTAATGACGAATGGAATTTCGTGGGATCAAGGCGAGCAGAGACTGTACAATCTCTGTCGCTGAGTGAGTATCTATCTCACTGTTTCTGATTGTGCTGCTACGGAAATGCTTGAAACTGCTGCATGAATGGTCGTGGGTATCACCGGGGATTGCGGTAGCCTACATTGCGAAGCTATCCCCTGACTAACAGACAATGTGCCCACTCAAGCCTGTCGCAGAACGTATCCGATGAATGATTCCTGGTTTAATTTGCCTGTTGGGTTGTAACGAAGATCAATGGAGAGACCTGCGCGTCCGTGCGCCCTGGTACCTTTTTTACACTAATGTTGTGTTAATTTGGGTTACATGTCCCTACTGAAATTCCCAACTCCAAGGCTCATACAACGTTGATGCTGGATAATTCAGCAACATTGTTGTAAAAATGCTGAACAGCGTTTTGTTGCTCAGCGTTTTAACTGTGACCAGTTTCGCATCGAAGACAGACAGCCGCAAAACATCGAAAGAAATTTGTAAGAACCGCTGCTCCTGTGAGGAAAAAGAGAATATATTGAGCATTAACTGCGAAAACAAAGGGTTTACAACGGTGAGTCTATTTCAGCCTCCACCGAACAAAATCTGCCAACTCTTTCTCAATGGAAACTTTCTTTCGAGACTTAATCCGAACGAGTTTATCAATTATGGTAATGTCACATCCCTTCACCTGGGAAACAACGGGTTACAGGAGATACAGACTGGAGCTTTTACTGGACTGAGGTTTTTAAAACGACTTCATCTCAACAACAATAACTTGGAGATAATCAAGGAAGTCACCTTTGCTGGTTTAGAGAGTTTGGAGTATTTACAGGCAGATTATAATTACATCAGCGCCATTGAAGCAGGTGCATTCGGCAAATTAAATAAACTGAAAGTGCTGATTCTCAACGACAACCTCATGCTGTCTCTTCCCAACAATGTATTTCGTTTCGTTATGTTAACGCATTTGGATCTAAGGGGGAACCGGCTTAAAATGTTGCCTTTTGCTGGTGTGCTGGAGCACATAGGCGGCATTATGGAGATCCAACTGGAGGAGAACCCGTGGAATTGCACCTGTGATCTGATACCCTTAAAAGCCTGGCTGGACACCATCTCGGTCTTTGTAGGGGACATCGTGTGCGAGACCCCCTTTAGACTGCATGGAAAGGACATTACACAATTGATTAGGCAAGATCTATGCCCCCGACGTAATGCTGGTGATTCGAATCACCGCGCAATGCAGCCCCCTTCTGATTCCCAATACGACGGCCCCTCTCCCACCCTACACCCCGGTGTCACTCCAACAAAAGCCCCACGGGCCTCTCGTCCCCCTAAAATGAGAAATCGCCCTACACAACGGGTAACGTCTGGTAAGGACAAACAAGTGCTGGGGCCTATAATGGTTTATCAGACTAGGTCCCCTGTTCCCATGACCTGCCCTAGTATATGCGTCTGTACCTCCCAGAACGCAGACACTGGATTAAATATCAACTGCCAGGAGAGGAAATTGCATAATATAACAGACCTTACCCCTACACCCTCCTATCCAAAGAAATTGCATTTAACAGGGAATTACTTACATACCATATATAGAACAGACCTAACCGAATACAGTACACTCGAGCTCCTCCATTTAGGAAATAATAGGATAGCTGTTATTCAGGACGGGGCCTTTGACAACCTGGCTAATCTACGGAGACTTTACCTCAATGGCAATTACATTGAAAGTCTATCCCAATCATTATTCGTAGGGCTGCAGAGCCTTCAATATTTATACCTGGAGTACAATGTCATCAAGGACATTTTACCACAGACGTTTAACTCATTACAGAATCTGCAGCTGCTGTTCCTAAACAACAATCTACTAAGATCCCTTCCCGACAATATATTTTGGGGGACTATGCTAACAAGACTGAACCTGAGGAACAATCACTTCTCCCACCTGCCGGTGCGCGGTGTGCTCGACCAGCTCTCCGCATTCATTCAGATCGATCTGCAGGAGAACCCATGGGATTGCACATGCGACATCGTCGCCCTTAAAAACTGGATGGAGCTGTCCAGCACCAGTGTAGTGGTAAATGAAATCACATGTGATTCGCCCTCCAAACACGCAGGGCGGCTGCTCAGATCTCTGCGTAATGACGCAATTTGTCCCGAGCCTAACGAGGTCACAGTAGGCCTAACCAAGGCCCCCACGGTCAGTCCCAGCACCGACTCCACTCCCCCGCTTGCCATCACGTCAACAGAAGAGCAGATACCCGAGATGCACGCGGAGGTGCCCCTGTCTGTTCTCATACTGGGACTGCTCGTGGTGTTCATTCTGTCGGTCTGCTTCGGGGCTGGTCTTTTTGTATTCGTCCTCAAACGACGCAAAGGAATTGATAGCGTCCCCGCCAGTGCCAATCATTTAGATATAAACTCTTTCCACGTACAGTATGGTTCATATAGCTCAGAGCCCACTGCAGACAAAACAGAGACACATGTGTATAACTACATCCCTCCCCCCGCTAGCCAGATGTGTCAGAACCCTATCTACATGCAGAAAGATAGCGAGCAGGTGGCGTACTATAGGAATCTAAAAGAGCTaactttcagcaccatggacccgAAAAAGTCGGAGTTGCCCCCAAGCCCATATACCATAAGCACAGTGGAACTCAATGAGAAACAATCTTGTGGCAATCGACAGCCGGAGCTGCTTTATCAAAACATTGCAGAGAGAGTTAAGGAGCTTCCGACTGCTGGCGATCAGAATTACAGTTTCTGCACTTTACCGAAAAGACAATTCATTCCTCCATTTGAAACTACTAGACGACACAAACAGGACAGGTTGAATAAAACTGTTCTCTATGGGACTCCACGAAAGTATTATGCTGAACAATCAAAAAATGAACACCCTTTGCTGCCTGGGAAGCTAAAAACAGAACCAGACTACCTCGAAGTTCTGGAAAAACATACTGCAATGAGTCAGTTGTAAGATATGGCCCTACTTACTATCATCACACGTATTACATCGGTATGTATCTATGTATTCCACAAATTGACGAGTCCAACTCAAACAAAGCAACCTAAGCCTttttatctttttttattttccagCTGTATTGAGTCAACGTAGCCCTTTATGCAGACAGTTATATTATATTACTGGAGGTTTAACATATTTATTATACTTTAAATATAAAGACTGTAGCAGGTACCGCAAGAACTATGTATAATACGGCTGTGTGCAttttatataatatattttattttctctgTGGAAACAAATATCATTTTTAGATGAATAATTGAGAAATTACATTCCTGTATATAATAATGAGTGTCAAACACATGTAAAGGTTCTGTCCACATGACGATCCATTTATTCCAGAAGTGCCTTTGCACTCCGAGTATTTTATCTTTGCTTTCTGCAAATGGAAATTTGCTGTATTTTAAGAATCTTTATGTACAATTTAATTATTTGTCCATTACATTAAACATAATTGAAGAGGGTATGTATGGTAAATAATGTTTTGAATATCTAAGTGTCTTTCAAGATGTACAGTTTAGCGAATTGCATAAGATTGTATGCTATAGATGAGCAATACAAGTGCCAGAAGAGCAATTCCATTTTCACCGAAGCACTTTGTCAAGTCTGAATTTGAGGTGAGCATTATTAAGATTATaactgtctgtctttgtgtttgtgtgtgtgctcccaTGTGATGAGGGGTTGGGTGCTTTGGGGGCGGTAACATCTCTCTCTTTGATGGAATCCATAGACCAATGTGTATTGATGAGGAATTTGATGAGTACTTTTGGCACGAATGACGAATTTATCGACCAAGGGCCCTCACAGGAATACCATTAATTTCACACTTATTATTTTCTACCCAACAGTTAGAGAGAAGCAGTGTCCACTAAAAGTGTAGATTATTTATCTCAATATTCTGATTTAAGGGTGATAAAAACTACAGCTCTCCAGGAGCTTACTTGAAAGGCACAAATTATGATTAGTTCTCAAAGCTCCTCATACACAACATGTCTTGTTTCTAATGGTTTTAAGGAGACAAGTTTATATTCTGCCCTTCAGGTGACATTTGCTTTGAGGTCTGCTGTAGACCTATACCTTCTTCAAGCCCAGATTGTTctgctgttttttttctctcactctgtttcctGGCTGCTTCAAGTAGCTACTATTGTGTCACTGTCAATGTTGCAGATATTTTTCAGCTTGTGCATTTTCAATGGATTCTACAGTGTGGGGACTTTTCACTTGATTTGTTGGATTTCACATTGACTTTGTAAAGAGTgcacagtgttgttgttgttgttttttatcacAGGTTGTTAATCACATTGGTCAAATAGATTAATGAAATAAGTGTATAAGTGTCTACTGAGAACCAACACAAATTGGGAATTGAAGTTAGCAATAACTGGCCTTCTGATTTGATTGAATCCTGGATTTTATGCTTAAACATTTTCAATACAGAACACTGACCATGAAAAAGTTAA

Function

NR:

description
SLIT and NTRK-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560777.2 True 4671 mRNA 0.42 1 1957316 1961986

Neighbor

gene id symbol gene type direction distance location
LOC110488542 NA coding upstream 840684 1107789 ~ 1116632 (+)
LOC110488511 rnf212 coding upstream 1186570 762890 ~ 770746 (+)
si:ch211-255i20.3 LOC106604974 coding upstream 1196689 750392 ~ 760694 (+)
LOC110512013 ctbp1 coding upstream 1205696 732078 ~ 751620 (+)
LOC118938770 LOC106604976 coding upstream 1308174 644145 ~ 649142 (+)
LOC110488545 LOC106604959 coding downstream 349081 2311067 ~ 2321285 (+)
LOC110488546 LOC106604958 coding downstream 379011 2340997 ~ 2516222 (+)
LOC110488547 LOC100136420 coding downstream 653371 2615357 ~ 2616987 (+)
zgc:66433 cb055 coding downstream 657921 2619907 ~ 2658706 (+)
LOC110488550 LOC100194523 coding downstream 767931 2729917 ~ 2737654 (+)
G1204051 NA non-coding upstream 82196 1866918 ~ 1875120 (+)
G1203897 NA non-coding upstream 277695 1679379 ~ 1679621 (+)
G1203742 NA non-coding upstream 366400 1569581 ~ 1590916 (+)
G1203605 NA non-coding upstream 483121 1473973 ~ 1474195 (+)
G1203604 NA non-coding upstream 483688 1473397 ~ 1473628 (+)
G1204405 NA non-coding downstream 114411 2076397 ~ 2076724 (+)
G1204554 NA non-coding downstream 228931 2190917 ~ 2191167 (+)
G1204556 NA non-coding downstream 229482 2191468 ~ 2191673 (+)
G1204560 NA non-coding downstream 231280 2193266 ~ 2193465 (+)
G1204564 NA non-coding downstream 234194 2196180 ~ 2196477 (+)
G1202826 NA other upstream 1016142 940502 ~ 941174 (+)
LOC110488551 LOC106604955 other downstream 1189718 2837214 ~ 3160873 (+)
G1205631 LOC106611372 other downstream 1212516 3174502 ~ 3175230 (+)
LOC110488581 LOC106611927 other downstream 2365567 4327546 ~ 4477610 (+)
G1207553 NA other downstream 2960155 4922141 ~ 4922560 (+)
G1208884 NA other downstream 3941935 5903921 ~ 5907769 (+)

Expression


Co-expression Network