LOC110489459


Basic Information

Item Value
gene id LOC110489459
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 2740229 ~ 2742064 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943654.1
ACTATTAGAGAGTCAATGCTTTGTAGACAGCTGACTCTGTCAGAGTAACTGTGAGATCTGTAAAGGACAAATGATTGAGGCAACTATGAGGGGGTCTACTAAACCCCAGTCATCACATGGGCTAGAGAAATTGCCATTTGCATCATCTTATTTGATTGATTCCATTCTGAGCAAAGGTGTGAGGATAGACACTGGGATCAGCAGAGAAGGTACGTGCCATTTGTTTCAAAACCAAAATTTGGAAGATTGTCAATTCCCTTTTGTAAGTGGCGCAGGGGAAATTGTGTTGGTGAGATTTCCAAATAGGTGAAGAGAATTCTGTTCACATGATAGATAACTGTGTACATATTTTAAACAGTGGATTCCATGGGTCCAACATCTCTCAAAGAGACTGAGAATCAATCCAACAAGTCCGAGCAGATATCAATAGCAGATCATACTGCTCCTGAGGAGAACAAACGCACTTTACAGCCACAAGATACTAGGAAAGAGATGACAGTAAATACTAACAGAGGGACAGAGCTTGGCTCCAACAGAAACCAAACAGAGCAGCTGAAAACACCAAGTTCGGGTGGACACTCAAGGAAGCAACGACGTTATCGCACCACTTTTACTAACTTCCAGCTGGAACAACTGGAGAGGGCTTTCTGCAAATCCCACTATCCAGACATTTTTGCCAGAGAAGAACTGGCAACGCATCTAACTTTAACAGAGGCAAGAGTCCAGGTTTGGTTTCAGAACCGCAGAGCCAAGTGGCGCAAGAACGAGAAGGTTGGAGTGTTGAGTTCCCTCCCTGGGCTACCTTTAACCAACTCCCTGGGCGTTTACCTGGATGTCCCCTTGCACCAGGCCTCTTTGGTGGAGCCATCCTGGGGGGGAGCCCGATACACGGCCTCAGTGTATGCGCCTGACTCTGTTGGAAACCTGGGTATTAACACTCTGGCCTGGGcctcactgtgtggacatcctTTTATCCATCCTAACTTCAGCAGGTATATCAGACTTCTGGTTCATATGTTATACTGTATACCGACTAGGTTACAAGACTTGGGTTAACTCAGCAGCGGATTTAAAAACCACTTAGTTGTTTTTCTCTCCTTAGGTTTTTAACCTTGTTAAATCCATTGGGTAACACTCCAACCCTGATGACCAAACCTACCAGAATATCCCAGGTCAGCCCAGCCGACAATGACAGGAGGCTACTTAGCACTGGCCACAACAAGGAGCACTCTGTCCACATGCAGTAGTCCAACACATTGCGGGACATTGTCCTGTCCACCTTGTCCATGCCTGGTTACAATTTGTGCAATGCTTTGTTCACGTATGCTAGAGTAATAAGATTATGTTTCAATGTTTGTGTTGTATAATTTACTGGACAGCAAAACATCTTTCCTAAATATTTTCGATAAA
>TU1376688
GTTGGAGTGTTGAGTTCCCTCCCTGGGCTACCTTTAACCAACTCCCTGGGCGTTTACCTGGATGTCCCCTTGCACCAGGCCTCTTTGGTGGAGCCATCCTGGGGGGGAGCCCGATACACGGCCTCAGTGTATGCGCCTGACTCTGTTGGAAACCTGGGTATTAACACTCTGGCCTGGGcctcactgtgtggacatcctTTTATCCATCCTAACTTCAGCAGGTTTTTAACCTTGTTAAATCCATTGGGTAACACTCCAACCCTGATGACCAAACCTACCAGAATATCCCAGGTCAGCCCAGCCGACAATGACAGGAGGCTACTTAGCACTGGCCACAACAAGGAGCACTCTGTCCACATGCAGTAGTC

Function

NR:

description
homeobox protein ARX-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943654.1 False 1410 mRNA 0.45 3 2740229 2742064
TU1376688 True 368 lncRNA 0.53 2 2740390 2740867

Neighbor

gene id symbol gene type direction distance location
LOC110488549 lonrf3 coding downstream 21443 2707872 ~ 2718786 (-)
LOC110487696 ids coding downstream 132808 2599880 ~ 2607421 (-)
LOC118938747 ids coding downstream 148152 2584539 ~ 2592077 (-)
LOC110488543 LOC106604962 coding downstream 1223107 1511043 ~ 1517122 (-)
LOC110488541 LOC106604901 coding downstream 1845499 886467 ~ 894730 (-)
LOC110488554 LOC106604953 coding upstream 535003 3277067 ~ 3287280 (-)
LOC110488557 NA coding upstream 577666 3319730 ~ 3332672 (-)
LOC118938689 NA coding upstream 601593 3343657 ~ 3347990 (-)
LOC110488559 NA coding upstream 637870 3379934 ~ 3381683 (-)
LOC110488563 NA coding upstream 711736 3453800 ~ 3456246 (-)
G1205272 NA non-coding downstream 2577 2736260 ~ 2737652 (-)
G1205262 NA non-coding downstream 54784 2684792 ~ 2685445 (-)
G1205223 LOC100136420 non-coding downstream 79246 2613992 ~ 2660983 (-)
G1205090 NA non-coding downstream 167606 2572411 ~ 2572623 (-)
G1205060 NA non-coding downstream 184936 2555056 ~ 2555293 (-)
G1205350 NA non-coding upstream 70168 2812232 ~ 2812541 (-)
G1205360 NA non-coding upstream 77217 2819281 ~ 2819528 (-)
G1205368 NA non-coding upstream 83586 2825650 ~ 2825976 (-)
G1205952 NA non-coding upstream 193339 2935403 ~ 2935618 (-)
G1205956 NA non-coding upstream 196168 2938232 ~ 2938461 (-)
G1205002 NA other downstream 230817 2508911 ~ 2509412 (-)
G1202426 NA other downstream 2135699 603006 ~ 604530 (-)
G1206283 LOC106604946 other upstream 707017 3449081 ~ 3451129 (-)
G1206291 fbxo38 other upstream 724999 3467063 ~ 3467669 (-)
G1206357 LOC106604937 other upstream 868739 3610803 ~ 3612293 (-)
LOC110488575 LOC106604935 other upstream 986431 3728495 ~ 3733973 (-)
G1206939 LOC100136477 other upstream 1482975 4225039 ~ 4225969 (-)

Expression

LOC110489459 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.
End of interactive chart.

LOC110489459 Expression in each Bioproject

Bar chart with 14 bars.
LOC110489459 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Co-expression Network