phykpl (LOC100286425)


Basic Information

Item Value
gene id phykpl
gene name LOC100286425
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 4937303 ~ 4965435 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560862.2
CAGACGCATGCGCAGTTATGAAAATCCACGTGATTTCTTCAGAAAGTTGTTATGACGGAAAAGACAACTAGAAACTGGAGTTTAATTTAGTAATACAAACTAAGAGAAACGCAGTGAAAATGGCGTTGGAAATGTTCAGGAAAGAAGAGACTCTTGCAATGAGAAAGAAACTGATTGGGCAGTCTTGCAGACTCTTCTATTCAGACGATCCCGTGAAGATAGTCAGAGCCAGAGGACAGTATTTGTATGACGAAAATGGCAAGCGGTACTTGGACTGTATCAGCAACGTTCAGCACGTGGGTCACTGTCATCCCAGCATCACACAAGCAGCCACGACGCAGATGGAGCTTCTGAATGCCAATTCGCGCTTCCTTCACGACAATATAGTTCAGTATGCCGACCGCCTCGCTGCCACTCTGCCCGACAAGCTGCGTGTCTTCTATTTTGTCAACTCAGGCTCAGAGGCCAATGATCTGGCACTACGCTTGGCCCACCAGTACACCCAACATGAAGACGTCATTGTGCTTGACCATGCATATCATGGGCACCTGACTTCGCTCATCGATATCAGTCCATACAAGTTCCAGAAGCTGACAGGACAGAAAGAGTGGGTTCACGTGGCACCCATACCAGACATCTATAGAGGTATATTCAGAGAGGACCATCCCAACCCAGCCCAGGCATATGCAGATACTGTGAAGGATGTGATAGACAAGGTGCACCAAAAAGGTCGCAAGGTTTCTGCATTTTTTTCTGAGTCCTTGCCCAGTGTTGGAGGCCAAATCCTCTTGCCCAAGGGATACTCAACTAAAGTAGCAGAATACGTGCGCTCTGCAGGGGGAGTGTTTGTGGCAGACGAGGTGCAAACAGGTTTTGGGCGTGTGGGGAGCCATTTCTGGGCCTTCCAGCTGCAGGGTGATGATTTTAGCCCTGACATAGTGACTATGGGCAAGCCGATGGGCAACGGACATCCCCTGTCATGTGTAGCAACCACAGCGGAGATCGCTGGGGCCTTCACAGCCAACGGAGTGGAGTACTTCAATACATTTGGCGGTAACCCAGTGTCGTGTGCCATCGGCCTGGCTGTCCTGGACGTGATTGAGAAGGAGGACCTGAGGGGGAACTCCTCAAGAGTAGGAGGACACCTATTGGACCGGCTGAGACAGCTACAGACCAAACATCCAATCATTGGAGATGTCCGTGGAGTGGGGCTGTTTGTGGGCTTGGAGATGGTCACCGACAAAGAACAGAGGACCCCAGCTACAGACGCAGCAGCGCAAGTTGTCAGAAGACTGAAAGAGGAGTATATCTGTGTCAGTACAGACGGCCCCTGGGAGAACATTGTCAAGTTTAAACCTCCCATGTGCTTCAGTATGGAGGATGCAGACTTGGTGGCAGACAGGATACACCACATTCTCACAGACATGGAGCGCAGTCATCAAAAACTGGACAGTGAAGATTTAAGACTAACTGGAGTCATCTTGGAGGAAGACAAGGGAAGGAATGCAGAAGTATTCAACACAACCAATCTCACAGATCCATACCACAATTaaggataatttttttttttaaatcattaagATTACACTACTAGATCTAACAGCACAAGAATGGTTTGTGACAATTCATGAAGTGGAATTAGTGACTGCTTTTGATTCTGCATGAGGGACATAAGAGAAGCAGTGACATATGCAACAGAAAGGCAATCGATTTGTACTATAACACAATGTACATATGAATTTATCCTCCTCGCATTTATACTTCCCTgtggaaatacagtgcattcggaaagtattcagaccctttgactttttccacattttgttacgtaacagccttattcgACAATGGATGaaatcctcaatctacatacaatacccaatTTTGATAATTTAAAGaaaattaaaaaacaaatacattatttacataagtattcataccctttgctatgagactcgaaattgagcttatgtgcatcctgtttccatgaataaaccttgagatgtttctacaacttggagtccacctgtggtaaa
>XM_021560864.2
GCTTTGTTCAACAAACCATGgtggagttagtgcctacaaaaagatgCCATTACTGTTGCTCTCTATTGGTGACATTATTTTAATGCATCTGATTTGTGGGTCACTGTCATCCCAGCATCACACAAGCAGCCACGACGCAGATGGAGCTTCTGAATGCCAATTCGCGCTTCCTTCACGACAATATAGTTCAGTATGCCGACCGCCTCGCTGCCACTCTGCCCGACAAGCTGCGTGTCTTCTATTTTGTCAACTCAGGCTCAGAGGCCAATGATCTGGCACTACGCTTGGCCCACCAGTACACCCAACATGAAGACGTCATTGTGCTTGACCATGCATATCATGGGCACCTGACTTCGCTCATCGATATCAGTCCATACAAGTTCCAGAAGCTGACAGGACAGAAAGAGTGGGTTCACGTGGCACCCATACCAGACATCTATAGAGGTATATTCAGAGAGGACCATCCCAACCCAGCCCAGGCATATGCAGATACTGTGAAGGATGTGATAGACAAGGTGCACCAAAAAGGTCGCAAGGTTTCTGCATTTTTTTCTGAGTCCTTGCCCAGTGTTGGAGGCCAAATCCTCTTGCCCAAGGGATACTCAACTAAAGTAGCAGAATACGTGCGCTCTGCAGGGGGAGTGTTTGTGGCAGACGAGGTGCAAACAGGTTTTGGGCGTGTGGGGAGCCATTTCTGGGCCTTCCAGCTGCAGGGTGATGATTTTAGCCCTGACATAGTGACTATGGGCAAGCCGATGGGCAACGGACATCCCCTGTCATGTGTAGCAACCACAGCGGAGATCGCTGGGGCCTTCACAGCCAACGGAGTGGAGTACTTCAATACATTTGGCGGTAACCCAGTGTCGTGTGCCATCGGCCTGGCTGTCCTGGACGTGATTGAGAAGGAGGACCTGAGGGGGAACTCCTCAAGAGTAGGAGGACACCTATTGGACCGGCTGAGACAGCTACAGACCAAACATCCAATCATTGGAGATGTCCGTGGAGTGGGGCTGTTTGTGGGCTTGGAGATGGTCACCGACAAAGAACAGAGGACCCCAGCTACAGACGCAGCAGCGCAAGTTGTCAGAAGACTGAAAGAGGAGTATATCTGTGTCAGTACAGACGGCCCCTGGGAGAACATTGTCAAGTTTAAACCTCCCATGTGCTTCAGTATGGAGGATGCAGACTTGGTGGCAGACAGGATACACCACATTCTCACAGACATGGAGCGCAGTCATCAAAAACTGGACAGTGAAGATTTAAGACTAACTGGAGTCATCTTGGAGGAAGACAAGGGAAGGAATGCAGAAGTATTCAACACAACCAATCTCACAGATCCATACCACAATTaaggataatttttttttttaaatcattaagATTACACTACTAGATCTAACAGCACAAGAATGGTTTGTGACAATTCATGAAGTGGAATTAGTGACTGCTTTTGATTCTGCATGAGGGACATAAGAGAAGCAGTGACATATGCAACAGAAAGGCAATCGATTTGTACTATAACACAATGTACATATGAATTTATCCTCCTCGCATTTATACTTCCCTgtggaaatacagtgcattcggaaagtattcagaccctttgactttttccacattttgttacgtaacagccttattcgACAATGGATGaaatcctcaatctacatacaatacccaatTTTGATAATTTAAAGaaaattaaaaaacaaatacattatttacataagtattcataccctttgctatgagactcgaaattgagcttatgtgcatcctgtttccatgaataaaccttgagatgtttctacaacttggagtccacctgtggtaaa
>TU1379006
TCTTCAGAAAGTTGTTATGACGGAAAAGACAACTAGAAACTGGAGTTTAATTTAGTAATACAAACTAAGAGAAACGCAGTGAAAATGGCGTTGGAAATGTTCAGGAAAGAAGAGACTCTTGCAATGAGAAAGAAACTGATTGGGCAGTCTTGCAGACTCTTCTATTCAGACGATCCCGTGAAGATAGTCAGAGCCAGAGGACAGTATTTGTATGACGAAAATGGCAAGCGGTACTTGGACTGTATCAGCAACGTTCAGCACGGTAAGAGACACATCTATAGAGCTCGCCAACTTGTAGTACAACAAATCGGAAATTATATACCTCAGGatcgttcagccattcctatgtGCAAAATTAATGGGAAATGAATAGTTTTGGAATAAAGTTAAACGCCGAAAATAAAGTCTGAGGTTAACACCGCATCATAACCTGGTAATGACCACCTGACTACAATTTATTACCTATACTCTTAGAAAAATAGGTtcctaaagggttcttcggctgtacTCTTCTTGGTTCTAGGGAGAAGGCTTGTTGGTTCCAcgtataacccttttgggttccatgtagaaccgtgGAAATGGTCCTActtacctgaaaccaaaaaggttatcctatggggacagccgaataacccttttaggttctagatagcacctttgttTCTAAGTTTACTGTAAAAAGTATTGCAGAGGATAAAGTAGGATATTGAAAACATTGTTCATTACATTTCTACTTGTTTCCATAGTCACCAATTAAAGTTAATCTGCAACATATTAGCGTAGTGGCCCTCTTCAAGAGTCGTGCGATGGGTCAGATCTGCAGTGAAGAGAATCGGTGCATCACAACTTTATACATTTGAGATTTTAAAAGACTAGAAAAGAAAAGGACTAGAAAAGGACATTCTTGGTGTAACTTTGTGGACTCAGCTATCTAAAAATATTTCCATGGTACTAGTTAAAACGATTTTGTGGCAATTATAGCTTAGAGATGTCTTCAAAAAAGAGCAACTTGCTCATGCACATACTTTGCGTCCTTCTCCACCACGGCGTTCAGGGGCATATTTAAAGCCTTTCCAGAAGGCCGGCAACACACCAAGCTCCTGATTTTTCTGTCTGTTCATGACACATACTGTaagcataaaaataaaataatgattgacataatGTGGGCATGCAGGACAGtacataacacacagaaaaatatatttaacagtcTGAATCTACTAAAAGTGGTAGCAAAGGCATGTTTGCTCCTCTGTTCCTTCATATTGAAGTGGGACATTACTTCATTGGTCATCAATCTGAAACATTTTAAGATTaaagataagataagataaaaaaaaattaagataAAATTACACAGTAGTTGTATAATTACAATTTTTAACTCATCTCCAAATGATAAAGTTTTGCTTAATCCTAATACATGTTTAATATTCAAACAACTTTATATAAACACACCGCTCCATAATCCTGAGCACATTGTCCCAGACAAAGGTTCCGCCAATTGAAGACAGCTTGGCAGTCTTAAAAAAAGAATGCcaaatgcaacaattcaagta
>TU1379001
GTGAAGAGTTATCACCATTCTTATTTTGGTATAAATCTTTGCATTATTTTTTAGAAGAGAACCTTTAAGCAGAAATATCCGTTGGTCTCGTCTCCCTTTCCAGACTGAAAGAGGAGTATATCTGTGTCAGTACAGACAGCCCCTGGGAGAACATTGTCAAGTTTAAACCTCCCATGTGCTTCAGTATGGAGGACGCAGACTTGGTGGCAGACAGGATACACCACATTCTCACAGACATAGAGCGCAGTCATCAAAAACTGGACAGTGGAGATTTCTAAGGTTTGTACAAACCTGTAGAAATATTTAATTGCATCAGACAGTAAGAATTGGTCACAATCAGAAGGAGTCAGAGGTAGTGTTGTTGATAGTGTGATGTGCTCCTCCAGGAGATTTCACTAACCGTTAAAAGTGCATTTCTCAGACATTGGATTTCATAGGGCAGAGCACCGGGGCCTGTATCTACAAATCATCTCAAAGTAGAAGTGCTCATCTTGGATCTGTCCATAGAAATGGTATTTATGATCTAAAAAGGCTAAACTTATCCTATATCAGCATTCCTACTTTGAGGTTCTTTGTGGATATGGTCCCAGAACTTGGGTATTTTGCTTTTCATACAAACTGCAGTCCTCATGGTGGAAAATAAAAGGGAAGGAACGCAGACTTATTCAACACAGTCAATCTCAAGGATCCATACCACACTTAAGGATAAAAAGCCAAATTGTTAAGACATTAAGATTACACTACTAGATCTACCAACACAAGAATGTTTTGTGACAGTTCATGAAGTGGAATTAGTGACTGCTTTTGATTCTGCATGAGGGATAAGAGAAACGGTGACATATGCAACAGAAAGGCAATACATTTCTACTATAAAACACTAAAGTCGTGATCCTCACATTTATACTTCCCTGTGGAAATAGATAATCACATAGCAACTACTGGATCAAGAAGTGGTCACAAAGGTCTACTGATACAGTAGAAAAGTGTATGTTaagctgcatttacacaggcagttcAATTCTGATATCTTATTCCCCACTAAATTGGTGTTTTCACCCATCAGATCAGCTCTGTGAAACAATCTGGGACTGGTCTTTTGAGCAATTAATTAGTGGgaaaaataatcagaattgggctgcctgtgtaaacagccTACTTGACGTGAAATGGACACCGGCCCAGGCAGACTGATGAGGTCACTTCCAGCTGATCTTGATAACTGCAACATTGCATGGCAACAGTGACTTTGTACACATGACTGTATAGATGACAGACAATGTATGGGGGTGGGCGTGCACTTACCAGAGGACTACAGTTATTACCTTATCCACTTATAAAAACATACCAAATACTGTAGTTCAACGTCAGATCCATAGTGGGGTAAGATCAGCTAGCTCGGAAAAGTAAATTGACGCGGAGGCTACGTAGCACAGCTTTCAACCCATTGACTGAGCCAGTTATCCCTCTGCCAGCAAAGTATCTGCCACCGCATCCCAGAGAGGCATCCATCTGTATGGCACGATTTTAACCTTACCCAAGACAGGACAAGTAATCCATTTAACAGTACAAAGCAGTTAACAGTAACCAAAACAGCATTAGGGGGAGGGTTTATAAATGATAACAAAAGGATCCACGTGTAATATAAACCAAAAGTTTATTTCTACCAATTTGCCCAAGACACTAGAGGAATGAGTTtccagagagaaagggaaggccCTCTACTTACATTAACAGGCTTGCGCTCAGTTGTACTGTATCGTATGTAACACTAGTAAAGCCACTTACAATTACAGAGAAGATGGGGGGGACCTCCTTAAAAAGCCAAAAAACGAATGCTGGTTGTCCTCGTCTACTAGCCAAATGCAAGCATTCACTAGACAAGCTTACAATGAAACCTTTGATTAGTTTTTAAATCTCTTATTTCACCTCACCCCACATCTGAAGCCATGCAACTCGCGTCAAACACTCAGCACGGGAAAATGTTTTACTAATCctagaaataacaaaaaaaaaaaggtaattgttttatttcaaaAGCTTCTGAAAGCTCTGCTCCGGTTTGTTGGCAAATCCAGTAGACATGTAAAATACAACCACACAATACATTAGATTCAAAAAGGTACCAAAAAGTACAGTAAAAATAACACTTCCATCTCTGGAAATGTAAATGGACAAAaccatataaaataaaaaataaaaaggtggAAAAGTGACATTTGCTTCCCCAGTTCCTCACTTGATCTGTACATATGGAGCATGAGTCCAAATTTCTGCCAACTCCAAAGGAAAAGCCAGAGCCCATGTTCGCTGTGGCCGGACCATGGGTTTCTTTTTTCTTATTTAC

Function

NR:

description
5-phosphohydroxy-L-lysine phospho-lyase isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560862.2 False 2036 mRNA 0.46 13 4937303 4951351
XM_021560864.2 False 1835 mRNA 0.46 12 4946671 4951351
TU1379006 False 1565 lncRNA 0.37 2 4937338 4939013
TU1379001 True 2344 lncRNA 0.40 2 4962756 4965435

Neighbor

gene id symbol gene type direction distance location
LOC110488588 NA coding upstream 198058 4730739 ~ 4739245 (+)
LOC110488586 LOC106604927 coding upstream 293356 4636594 ~ 4643947 (+)
LOC110488581 LOC106611927 coding upstream 459693 4327546 ~ 4477610 (+)
LOC110488584 NA coding upstream 565933 4370172 ~ 4371370 (+)
LOC110489462 NA coding upstream 648534 4285610 ~ 4288769 (+)
LOC110488601 NA coding downstream 265020 5216371 ~ 5220040 (+)
LOC110488602 NA coding downstream 276676 5228027 ~ 5232654 (+)
LOC110488605 LOC106604911 coding downstream 447059 5398410 ~ 5402791 (+)
LOC110488611 LOC106604836 coding downstream 1048749 6000100 ~ 6003751 (+)
LOC110488614 LOC106604892 coding downstream 1194458 6145809 ~ 6150743 (+)
G1207564 NA non-coding upstream 276 4936793 ~ 4937027 (+)
G1207559 NA non-coding upstream 10115 4926958 ~ 4927188 (+)
G1207551 NA non-coding upstream 16610 4920412 ~ 4920693 (+)
G1207550 NA non-coding upstream 18302 4918762 ~ 4919001 (+)
G1207549 NA non-coding upstream 18565 4918221 ~ 4918738 (+)
G1207693 NA non-coding downstream 250259 5201610 ~ 5201913 (+)
G1207697 LOC106604913 non-coding downstream 255076 5206427 ~ 5207808 (+)
G1207719 NA non-coding downstream 317337 5268688 ~ 5271222 (+)
G1207727 NA non-coding downstream 325161 5276512 ~ 5281983 (+)
G1207739 NA non-coding downstream 343322 5294673 ~ 5296176 (+)
G1207553 NA other upstream 14743 4922141 ~ 4922560 (+)
G1205631 LOC106611372 other upstream 1762073 3174502 ~ 3175230 (+)
LOC110488551 LOC106604955 other upstream 1784570 2837214 ~ 3160873 (+)
G1202826 NA other upstream 3996129 940502 ~ 941174 (+)
G1208884 NA other downstream 952570 5903921 ~ 5907769 (+)
G1209615 LOC106604863 other downstream 1792583 6743934 ~ 6744790 (+)
G1209622 NA other downstream 1800001 6751352 ~ 6751714 (+)
G1209572 NA other downstream 1801606 6752864 ~ 6756811 (+)
LOC110488661 diaph1 other downstream 2367669 7251365 ~ 7385487 (+)

Expression


Co-expression Network