LOC110488602


Basic Information

Item Value
gene id LOC110488602
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 5228027 ~ 5232654 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468453.2
ccttgacacacacacacatatatttgtGCATAGATACACAGTCACATACCCAGACTCAAACCATCACATGgctcctcatctctctgttttcatcctcctcatcatcatttTTTCCAGACTATCAGTAATGTCAATGCCATCCACCGAAGACACCGAAGACTCATACTTAACATCAGCGTACAGCGTGTATAGATCTGAAGACGTCATTAGATTACTCTACAGATTGGAGCGAACAGTCTTCTACCTGGTGAAAATTGTTAATGCAATGTTCTTCCTCCTGTGCACCATCATTGCTGTGTTGAATTTCAAGGTTAAAAAAATTCGAGGTAAAATTCAGGATTGTTAGAAACCTGACAGGTCTCTTTGGTGAGAACAGATGTGTGACCATACAATTGTGTTTTAAGATCCATTATTCACCAGCgagatgttttttgtttgttgttacaGCCAAACATTGATTTCAATCGGaatgttttattcatttgttTTACTGGTGATTGAAGCTGAAACTACACTGTGTGCACAATTATTAGGCAAGTGAGTATTCTGATCTTATCATTATTGCTATTGACATTTTCCAACTCCAAACCATATAAACGTGAATGCTCATTGGATTGAATCATTTTCAGGtgatgtgtatttgtgtgatgaGGGAGGGTGTGGTGAAAGTGAATAACATGTGTATAATTATTAGGCAGCCTCATTACCTCAGGTAAAATGGGCCACAAAATGTATTTCATTAACTGACACTGAAAAGACAAAAATTGTAAAATGCCTTTCAGACCGATGAACACTCTTGAAATAGCTAAACAATTGAGGCGTGACCACCGGACAATCAAACGTTTTGTTTGCGAATAGTCAACTGGAGCGCCAAAAAACCCACGGAGAAGAAAAGGCGCAAATTAACTGCAAAGACTTGAAGATAATTAAAcgtcaagctaccaggaacccattatcctccCGTGCCACCATATTCCAGAACTGCAACCTACCTGGAAAGTCCAGAAGTACAAGGTGTCAAGTGCTCAGAGACATGGCCAAGGTCAAGAAGGCTGAAACACCGCCAACACTGAATAAGATTCACAAGTTGAAGCGTCAAGATTGGGCAAAGAAATACCTGAAGACAGATTTTTCAAAGGTTTTATGGACAGATTAAATGAGTGAATCTTGATGGACCAGATGGATGGGCCTGTGGCTGGATCAATAATAGACACAGGGCACCACTTCGAGTCAGGAGCCAGCAAGGTGGAGGAGGGGTACTGCGATCATtaaggatgaggtagttggacctTTTTGGGTTGAAGATGGTCTGAAACTCAACTCCCAAACCTACTTCCAGTTTCTGGAAGATACTTTCTTCAAGTAGTGGTTCAGGAAGAAGTCCTCAGCATTCAAGAAGGCCATGATCTTCATGCAGGACAATGCTCCATCACATGCATCCAAGTACTCCACCGCTTGGCTAGCCAGCAAGGGCCTCAAAGACGCCCGAATAATGACCTGGCCCTCTTCCTCACCTGACTTAAAtcctattgagaacttgtggGCCCTTCTCAAACGTGAGATTTACAGCGAGGGAAGACAATCCACCCCTTTGAACAGCATTTGAGAGGCTGTGGTTGAAAAGAAGTGTTGCTATATTGATAACTGAATATTTACTGAATAAAGTCCAAAATGtttatttaattgtcattttgcATTACTTATTTGTTACACTTACTCAAAAAATTTAGAATAAACAAGTGATAATAATTGTGCACACATATATTCCCCTGAGAAAGACAAAACTCACTGTTCCTTTGTTAAACATTCAGATTTGAGGTTCAGTAACATTTTGGATTGACGGAGAGCATTGTGTTTGTTCAGCAATCCTAAGGAATACAATTTGCCTAATAATTGTGCACGCTGTGTATTTACCACAACCCCACAAacatctccttcctctccccaatCTCCATAGGCTACCAAATATCTCTAGGTTCATACATGATTAGCCTTTCGAATATTTTATGAATTATATTGATGCAGTAtactaaaatataaaaaaatgtaagtcTCTTTTTTCCCCTCCAAAGTATGAAGTTGCCACCTGGTTTTATTTATTGGTCTCCATAATATTACTGGTCCGCAGAAATATATGAACAAACTgattttctgttttgttttgctCTTTTGTCACTGATTTAACTCAATAACCAGTGTTGAATTGTTTTGAATGACTAATTACCACTGTTAACCTACATAAATGGAACACATGCATATTTTGCTAATAAAACGTTTTAAAGACACTTTAGGCTACTTTTTGTTGGCTATGAACATTTTGCAAATGTCTTGTTCTTGCTGATGGTTGAATACTGCTACTCTACCACCAGCATGATGTcattgtgcagtcctatatatgacatgtggAATTCACAAATAGATCATGTTACATATAGTACATTGTATTCAAATTGTGCTTTAGTACTGTATATTCCTCATACATATCTTATGGTACATTGTGATTGTCAGACTTGCATTTACCTTTACAATAGTTGCTGTATTGTTGTGAATGAAATGCTGTAACAAAAGTAAAGA

Function

NR:

description
neuropeptide-like protein C4orf48 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468453.2 True 2574 mRNA 0.38 3 5228027 5232654

Neighbor

gene id symbol gene type direction distance location
LOC110488601 NA coding upstream 7987 5216371 ~ 5220040 (+)
phykpl LOC100286425 coding upstream 276676 4937303 ~ 4965435 (+)
LOC110488588 NA coding upstream 488782 4730739 ~ 4739245 (+)
LOC110488586 LOC106604927 coding upstream 584080 4636594 ~ 4643947 (+)
LOC110488581 LOC106611927 coding upstream 750417 4327546 ~ 4477610 (+)
LOC110488605 LOC106604911 coding downstream 165756 5398410 ~ 5402791 (+)
LOC110488611 LOC106604836 coding downstream 767446 6000100 ~ 6003751 (+)
LOC110488614 LOC106604892 coding downstream 913155 6145809 ~ 6150743 (+)
LOC110488618 LOC106604841 coding downstream 934577 6167231 ~ 6175289 (+)
LOC110488619 LOC106604842 coding downstream 965370 6198024 ~ 6291026 (+)
G1207697 LOC106604913 non-coding upstream 20219 5206427 ~ 5207808 (+)
G1207693 NA non-coding upstream 26114 5201610 ~ 5201913 (+)
G1207564 NA non-coding upstream 291000 4936793 ~ 4937027 (+)
G1207559 NA non-coding upstream 300839 4926958 ~ 4927188 (+)
G1207719 NA non-coding downstream 36034 5268688 ~ 5271222 (+)
G1207727 NA non-coding downstream 43858 5276512 ~ 5281983 (+)
G1207739 NA non-coding downstream 62019 5294673 ~ 5296176 (+)
G1207787 NA non-coding downstream 129467 5362121 ~ 5451995 (+)
G1207774 NA non-coding downstream 148664 5381318 ~ 5388044 (+)
G1207553 NA other upstream 305467 4922141 ~ 4922560 (+)
G1205631 LOC106611372 other upstream 2052797 3174502 ~ 3175230 (+)
LOC110488551 LOC106604955 other upstream 2075294 2837214 ~ 3160873 (+)
G1202826 NA other upstream 4286853 940502 ~ 941174 (+)
G1208884 NA other downstream 671267 5903921 ~ 5907769 (+)
G1209615 LOC106604863 other downstream 1511280 6743934 ~ 6744790 (+)
G1209622 NA other downstream 1518698 6751352 ~ 6751714 (+)
G1209572 NA other downstream 1520303 6752864 ~ 6756811 (+)
LOC110488661 diaph1 other downstream 2086366 7251365 ~ 7385487 (+)

Expression


Co-expression Network