LOC110488618 (LOC106604841)


Basic Information

Item Value
gene id LOC110488618
gene name LOC106604841
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 6167231 ~ 6175289 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942746.1
TGTTAAAATAACCTGTGAGGTTAGCACCCGGAGCATCCAGGGATCACTGGTATACAAACTGTTCCCTCACAGATGAGAAGCATCAGAGTGGGATAGGGAGGCATCCCAGATTCAGAGACGATAAATCACACAGCGATATACTCACCTCATATCACCTCATTTCACCTCACATCACCTCTACGGCTGAACCTgtgagaagagagacagAGGAAGATGATGCAATCAGTGTATGATGACCTGTCCAAGCAGAGGATACAGCAAGCCAAGGCTCTGTGTACAGAGGCCAGGGGAGGAGGTATGAACTTGGGGAAGAAGATCAGTGTTCCCAAGGATGTGATGATGGAGGAATTGAACCTTCCGTCCAACCGCGGCTCCCGCATGTTCCAGGAGAGACTGAGACGGGTGGAGAGATTCACACTGGAGAACCAAGTCCATGACCATTACAGCaatGGCCTTCCAGAGCCCTTGCCCCCCCAGACCATACAGGGGCcccagagggggaaagagaaccAGGCATATCTGATGCCTGGCAACCACAGCCTGATCACCACTCTACAGAAGACTGAGGCCATGAACGGCAGCTCCAACGTCATTGCCCCAGGCTACGTGGGTCCCCTGAAGGAGATCCCTCGTGAGAAGTTTAACCTGACAAGCAGGTCCTACCGTTCCCCCTGGAGGGAAGCCCTGGGTGACAGTGACGACCTCAGGTCCTCCATCAGCACCCAGTTCCAACAGAGGGCCACACTACAGCCCGCCAACTACAGGTGTTTCAACAGAGCGGCCATGCCATTCGGAGGCGCACAGCAGAAGAGTATGAGGGTCATCCCAGTGATGGGGTTCGAGCTGTTGGACTCCCAGTGCCTCCCTGGTACGACCCTGGACCGCATGTGTAAACGGCCCAACTTCAACAGAGTACCACGGGGATGGGGTCACGACTACTCCCCTGAATCCACCGACCTGTGAGAGGACCACCACTCACCTATTACCTTCAAACTTCCTGTGACCTTTGTGAAATTGCAGGCTAAAAGATTTAAGCATCGTTTTGCTCCTATTACCCTTCCCTCCTGATTCAAAGATGACTCCCTCTAGAGTAGGTAGCCCCAAACTATTTTTATATTAAGATGCTTTCATCTATTTAATGGTTATATTAGGATAAGGGTCTGTGGTTAGGGGCAAGTTCTAACTCGAGCCCTCTGGTATTCAGTCAGTGGCATAGGGAAAGACTGGTGAATGATAAGATTGTTTCCTGATGAGAGCTCTGTGGATGGGCCTGTGTGGAGGCCAACTGAGGACTACTGAATCAATCAACAGTTCATTATGAGAGTTGAGCCCAGGCAAACAAAGGCCAGTTGAGGGGAGAGGTGATTTGTCTCTTTTTTAATCAAAAACGCCCTCTTCCTTAGCCCAACTGCCCCATTTCCCTCCCAACTCTACAACTCGACATAACCTTTggctcccttccctctctcctaccaACACACTTCCTTCCTCCGTCTTTCTTGCCCTCTGTTATAAAGGATTGATTTTGTGATATTGATTGCTTTAAATGTAAATGATAGAGAACTTGTTTTAATGGCAGAGGTGGACAACAAAACATCACAATAATAAACTGAATCATTTTTGTGGAAAATGAA

Function

NR:

description
myozenin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942746.1 True 1634 mRNA 0.49 6 6167231 6175289

Neighbor

gene id symbol gene type direction distance location
LOC110488614 LOC106604892 coding upstream 16488 6145809 ~ 6150743 (+)
LOC110488611 LOC106604836 coding upstream 163480 6000100 ~ 6003751 (+)
LOC110488605 LOC106604911 coding upstream 764440 5398410 ~ 5402791 (+)
LOC110488602 NA coding upstream 934577 5228027 ~ 5232654 (+)
LOC110488601 NA coding upstream 947191 5216371 ~ 5220040 (+)
LOC110488619 LOC106604842 coding downstream 22735 6198024 ~ 6291026 (+)
LOC100136156 LOC100136156 coding downstream 118912 6294201 ~ 6298860 (+)
LOC110488624 LOC106604895 coding downstream 238842 6414131 ~ 6419690 (+)
LOC110488626 LOC106604896 coding downstream 256732 6432021 ~ 6440952 (+)
LOC110488627 LOC106604897 coding downstream 288522 6463811 ~ 6468368 (+)
G1209137 NA non-coding upstream 2832 6163323 ~ 6164399 (+)
G1209133 NA non-coding upstream 14272 6152255 ~ 6152959 (+)
G1209130 NA non-coding upstream 20464 6146374 ~ 6146767 (+)
G1209127 NA non-coding upstream 22924 6144074 ~ 6144307 (+)
G1209125 NA non-coding upstream 25752 6140691 ~ 6141479 (+)
G1209219 LOC106604845 non-coding downstream 132200 6307489 ~ 6307824 (+)
G1209367 NA non-coding downstream 139728 6315017 ~ 6315255 (+)
G1209373 NA non-coding downstream 147289 6322578 ~ 6324818 (+)
G1209375 LOC106604846 non-coding downstream 161524 6336813 ~ 6337467 (+)
G1209475 NA non-coding downstream 307802 6483091 ~ 6486616 (+)
G1208884 NA other upstream 259462 5903921 ~ 5907769 (+)
G1207553 NA other upstream 1244671 4922141 ~ 4922560 (+)
LOC110488581 LOC106611927 other upstream 1773191 4327546 ~ 4477610 (+)
G1205631 LOC106611372 other upstream 2992001 3174502 ~ 3175230 (+)
LOC110488551 LOC106604955 other upstream 3014498 2837214 ~ 3160873 (+)
G1209615 LOC106604863 other downstream 568645 6743934 ~ 6744790 (+)
G1209622 NA other downstream 576063 6751352 ~ 6751714 (+)
G1209572 NA other downstream 577668 6752864 ~ 6756811 (+)
LOC110488661 diaph1 other downstream 1143731 7251365 ~ 7385487 (+)
G1210502 NA other downstream 1257088 7432377 ~ 7435168 (+)

Expression


Co-expression Network