LOC110488624 (LOC106604895)


Basic Information

Item Value
gene id LOC110488624
gene name LOC106604895
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 6414131 ~ 6419690 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560910.2
TGTGGTGAGGTGTAGATACTCAACAGGTGCGTAGGTTACAGGAGGTCGAGTCACGTAGATAGATTGCTAGGAATTTCTAGAGAATTGGTGATATAATTTTGTGGATTACTATGCGCAGAGGAGTTAATTCATTGAGATGTACGTGAGTAAAAACACCGGAATGTACACCGGAATGTACTCAAATTCGGTGGGACACCCGACTCAACCTCTGAACAGTCAGAACTTCATGCAATATACGGATTTCACCGGTTATCATCACGTCACAGGCATCAGTGACCCACATGCCCAGACGACAGGTGTGTGGAACCCTGCTTACTTAGCAGGTCCGCGGGAGGAGTGGTCACCGTATGGCCAGAGCGTGGACTTCCACGGTTTGAGCCCAGGTTCAGAACAGATACATTTCAGTTCCCCGGATCTGACATCCATTCTGCCTACGGGGCCGGGTACTCTTCCATCACTCAACTCCCCTGCCGGGCAGTACTCTCCAGATTCAGAGAGAAGAAACTCATACGACTGGATCAGACACAATGTACATTCATCCAGTACAGGAGGGAAGACGCGGACCAAGGACAAGTACAGGGTGGTGTACACAGACCAGCAGCGCCTGGAGCTAGAGAAGGAGTTCCAGTACAGCCGGTACATCACCATCAGGAGGAAGACAGAGCTGGCCCTGGGCCTCAGCCTCTCAGAGAGACAGGTAAAGATCTGGTTCCAGAACAGGAGAGCCAAGGAGAGGAAAATTACCAAGAAGAAGATCCAGCTGTCCCAGCAGACCTCTAAGACTACAACTACCCTGACCTTTACCCCATCCTGCCTGTCTGACCCCAGCAACGGCTCCATGGCAACCAGCTCCAGCTTGTTGTCAGAGACAATATCAATGACTATCAAAGAGGAGTACTGAGGATAACAATATTCAACTGCTGTTCCCATGACAATCACTACAGAAGATGTAATTGACCTCAGTGATATGATGAAAATGCTATTACATGCGTCTTGCACACCTGTAGTAGAATGCTACGGTCTGTGTTATGATAagaagaaagagatagagaaagaagaaCAGGTTACACTATGCAAATATGTATAAAAGACATAAGTGCCTTATTTGCAACTGCTTTTGTGTTTATATTTTCTTGACGCAAATTAATTTGTAACTAAAAAAATAACGGAAATGTTTTGATCTGATCtcgttttaaaaaatatatttttatcttCAATATTTTGCTTGAAAGGTTTGATTAGTTGAGGCACTGTGGAGGGAAATTCAATTGAAGAGATGTTGAGATACGAAGTAAATCAGGGGTATTTCGCTTCACATCCTGATAGTTGATCTACAGCTGGCCTCAGTTTCTCAATCATATGATTCATCCAGACAAATAAATGTCTTGGAACGTCTTATTGGTACAAACATTTGTGTTATAAACGACTTTACAAGTGTATCGTTGACACCTAGGCTACATATAGATGTTGTTTGTCCCGTTTTGCCAAAATGGACACCTGAAAACAAGTGAGACCCTGTACAGTATGTGCCAAGATAGCCATGATCACAAAGGAGAGAAAGCACACGCTTTAGCCGTTTACAGTCTCTCCACAAGTGATGAGTTTGCTATTTTAATGTCATAGGCAAATGAAAAGTTTCATGATTGCACTATCAAACTGATAAAAAACCTTATCTAAGTCACATGATGATGGGTACGGAACTCATTGCATTGCTGTAAAACTTATGGACACTTACATCCCCAGATGACAGTATTTGGCCTTAACTCttatgaatttcacatgaatCTGTGCAGTCTGCTGATTTTGAAATTGCATACCCCTTTCTCTCTGCTTATTGTCTAATATGGGACATGACAAGAAGATGTCAGGAGAATATGTTAGTTATATGATTACAACAGCATACCTGGGCATCTGTGTCACCTGTCTTATAGATCAGTAACCATAGAGAGGTAATGATCCTGGGGTTGTGGAGAATTCAACTGTGATTGGCCATAAAACTGTGTTTATTACTCCTCAGATGGGATGACTGGTAGGCCAATGCTCTTAACCTTGGACCTCTGACCTCTATGCTGTACTATTAGAGAAGACAAGAACAACTTTTGCTTGTTTTTAAAACAGGATTTTATTATCAAATTGCAGTTTCCAATCACAGTGGCATCAACAATGAGCACGACAAGTGACTCCTCTGCATATTACATTGTTATCAACACATTGTTAGAAACATTATCTTTATTTATCAACAGCCTCTTCACAATTTGTTCTTTTTGCTTGACTTATTGAGTGAGAATGAGATACCATATAGcaaaataatatgttttttttttagttaATGAGGGGATTCTCATCTGGAAATAATGCAACTCAAACAGGAAATGCATCACCAACGTTAACCCTCCAAAACCAGAGATGTGGAAAGGTTcaagggaagaaaaaaaaatggattGATGGTGTGAAAAGATATGACCATGTATCTAAACAACTATTTTACAACATTAGCTTATTTTTGCACTTGCTCAAAAAACTATTTCTAAAAATTATACATGATCTTATTTTCTGTACAGGTACTGTGCTGTATAAAGATCATCATGTAACTACTATCTTAGATATAACCAGaaatgtatgcatgtgtgttggCCAGGATGATTTTCCTCAGACAAATAAGAGTATATTTGATTTTTTAGCAATATCTCAAGATGTGTTAACTAGGGAGATGGACTGCAAGCTTTAAAGTATTGACTTAAGATATTGGTACATCAATTTCTGTTATGCAATTATCAAAATTCTTTAAAACATAATTTGAAATCACTATTTTATTACTTCTATCATGCAGCAAACACATGTAGGAATTTGTGACATATCACACAACTGAAACAAGACCAGACTGGTAAAACACTTTTCCAAAGAAGGAAATGTGGTAAAGAAATGTGGTAAATAAAAACAGAAGTGATGTATCCACTTCTTGGAAACAGACAGTGTCCACTTCTTGGAAACAGACAGTGTCCACTTCTTGGAAAAAGACAGTGTCCACTTCTTGGAAAAAGACAGTGTCCACTTCTTGGAAACAGACAGTGTCCACTTCTTGGAAACAGACAGTGTCCACTTCTTGGAAACAGACAGTGTCCACTTCTTGGAAACAGACAGTGTCCACTTCTTGGAAACAGACAGTGTCCACTCTAAAGTGTGAACATACATTTACAGTAACAGCTGTGTTTTGTAACTAAGACAACATGATTCAACATGGCTGTCGTCTGTATCAACTTTGGGCCTCTCAGGGAGTGCATCCCAATAATCTCTTTCTTCCTGAAATGTGGGCTCGTTCACCACAAGCATTGGATTCGTGTTGGCATGGGCAACAGGGCGATTCCATATTCTATTAATTTCCTTCCAAATCCaagaagggaagtgaacaagaaAAGGAGAGATCAGTGGGACGCAACCAGTGATTCATCTCAGACTCTCAGtgattctgtcacgccctgaccttagagagcctttttatgtctctattttggtttggtcagggtgtgatttgggtag

Function

NR:

description
homeobox protein CDX-1-like

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0031016 pancreas development biological_process
GO:0048546 digestive tract morphogenesis biological_process
GO:0050673 epithelial cell proliferation biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0001889 liver development biological_process
GO:0030855 epithelial cell differentiation biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09312 CDX1_4; homeobox protein CDX1/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560910.2 True 3537 mRNA 0.40 3 6414131 6419690

Neighbor

gene id symbol gene type direction distance location
LOC100136156 LOC100136156 coding upstream 115271 6294201 ~ 6298860 (+)
LOC110488619 LOC106604842 coding upstream 123105 6198024 ~ 6291026 (+)
LOC110488618 LOC106604841 coding upstream 238842 6167231 ~ 6175289 (+)
LOC110488614 LOC106604892 coding upstream 263388 6145809 ~ 6150743 (+)
LOC110488611 LOC106604836 coding upstream 410380 6000100 ~ 6003751 (+)
LOC110488626 LOC106604896 coding downstream 12331 6432021 ~ 6440952 (+)
LOC110488627 LOC106604897 coding downstream 44121 6463811 ~ 6468368 (+)
LOC110488631 LOC106604850 coding downstream 130715 6550405 ~ 6557892 (+)
tmco6 tmco6 coding downstream 155365 6575055 ~ 6584480 (+)
LOC110488634 LOC106604853 coding downstream 175217 6594907 ~ 6608407 (+)
G1209375 LOC106604846 non-coding upstream 76664 6336813 ~ 6337467 (+)
G1209373 NA non-coding upstream 89313 6322578 ~ 6324818 (+)
G1209367 NA non-coding upstream 98876 6315017 ~ 6315255 (+)
G1209219 LOC106604845 non-coding upstream 106307 6307489 ~ 6307824 (+)
G1209137 NA non-coding upstream 249732 6163323 ~ 6164399 (+)
G1209475 NA non-coding downstream 63401 6483091 ~ 6486616 (+)
G1209491 NA non-coding downstream 84186 6503876 ~ 6510769 (+)
G1209492 NA non-coding downstream 86355 6506045 ~ 6512141 (+)
G1209544 NA non-coding downstream 196856 6616546 ~ 6616789 (+)
G1209548 NA non-coding downstream 200595 6620285 ~ 6620498 (+)
G1208884 NA other upstream 506362 5903921 ~ 5907769 (+)
G1207553 NA other upstream 1491571 4922141 ~ 4922560 (+)
LOC110488581 LOC106611927 other upstream 2020091 4327546 ~ 4477610 (+)
G1205631 LOC106611372 other upstream 3238901 3174502 ~ 3175230 (+)
LOC110488551 LOC106604955 other upstream 3261398 2837214 ~ 3160873 (+)
G1209615 LOC106604863 other downstream 324244 6743934 ~ 6744790 (+)
G1209622 NA other downstream 331662 6751352 ~ 6751714 (+)
G1209572 NA other downstream 333267 6752864 ~ 6756811 (+)
LOC110488661 diaph1 other downstream 899330 7251365 ~ 7385487 (+)
G1210502 NA other downstream 1012687 7432377 ~ 7435168 (+)

Expression


Co-expression Network