si:zfos-741a10.3 (LOC106593898)


Basic Information

Item Value
gene id si:zfos-741a10.3
gene name LOC106593898
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 6485046 ~ 6488011 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560915.2
TTTATGCATCGGTCTGTGAAATGAAGAAGTGAGATCATGGTTGTGTTCAAACATTTCCTTCCCCATCGCTGAAATGAAACAATCATTTACATGTTTTACTCAAATAGCCTAGTGACATTCTGATTTATAACGTGGACGGTAGTTTGTTGTTTGTAATCCAAGTTTGGGACTTCAATAAGGGAATCTATAGTTGCCACATCAGTAGATGCCTATTATAAAGGAACATGTTTATGATGTTTGGACTTCTGATTATGTCAGCAGAATCCTCTTATGGCATGGTGACCTTCTGTAATGCTACACAGAATATGTCGTGTTACGGAGCTCTGGGAGGAACTGTCTATCTCCAGCTGATGAATGATGCCACAGGATCCGAACTCACATTCAAAAAAGACCCCACTGGTTCGAGAACAGTGAtattcaaaataaaacaaaacaaaataatccATGAACTCATTAAAGCCAGATCAGAGTTCTTCATCAATAATGGAACACTAAAAATAAATAACACAGAGAGGAGTGATTCTGctaaatattctttagaaatctTCAACTCAGATGGACTTTACTTGGACACGAGAGGAGTACAACTGATAATTGGAGGAGGATCTTATGGCACTGCCATAGGGTCACTAGTAGCTGTGGTCCTGGTCCTTGCAGTGGTGGTGGGAGCTTACTGTATTCGCAAGAGGAGGAACCCTCCACAGGCATCAGatgctgtTGAGAGTCCAGAACTGGAGTGTGATGACATCACGATTCTAAagaagagggagaaacagagagaggttcCAGAGGAGGTGGTGTATGGACAGATTGTAGTGCTGGAGGGTGCCAGACCAaacacggagagagacagacctgAGGGGCAGGAGGAGACTTTGTATGCTGGAATACAGCTTGGCCAATGAGTGCTGCATGTTTGAAGGGTTGGTCTTTAGAAGTGGTACTGAAGCCTTGTTTCTCCATTTGTTACTGTAACGAATTGGATTAACTTTCCCATATTACTGTTTATATTTCAATGCATTCAATGCTGAGGGTTTTGTACATTATTTACCTAAATAAATATCCCAACAAATGGACTGTC

Function

NR:

description
uncharacterized protein LOC110488628 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560915.2 True 1081 mRNA 0.41 4 6485046 6488011
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Neighbor

gene id symbol gene type direction distance location
LOC110488623 LOC106604848 coding downstream 81860 6343720 ~ 6403186 (-)
LOC100136949 m-csfr coding downstream 141799 6324987 ~ 6343247 (-)
LOC110488621 LOC106611873 coding downstream 172646 6310122 ~ 6312400 (-)
slc35a4 slc35a4 coding downstream 175185 6308182 ~ 6309861 (-)
LOC110488617 LOC106604840 coding downstream 288869 6175205 ~ 6196177 (-)
LOC110488630 LOC106604849 coding upstream 38815 6526826 ~ 6531252 (-)
LOC110488635 LOC106604855 coding upstream 145176 6633187 ~ 6640573 (-)
wfs1b LOC106604863 coding upstream 252338 6740349 ~ 6752711 (-)
LOC110488653 NA coding upstream 385582 6873593 ~ 6876124 (-)
LOC110488649 LOC106604867 coding upstream 397687 6885698 ~ 6890696 (-)
G1209682 NA non-coding downstream 49262 6385143 ~ 6435784 (-)
G1209700 NA non-coding downstream 61953 6408326 ~ 6423093 (-)
G1209653 NA non-coding downstream 161619 6322820 ~ 6323427 (-)
G1209654 NA non-coding downstream 162841 6321836 ~ 6322205 (-)
G1209229 LOC100136156 non-coding downstream 186186 6211682 ~ 6298860 (-)
G1209762 NA non-coding upstream 19725 6507736 ~ 6513415 (-)
G1209809 NA non-coding upstream 87192 6575203 ~ 6575912 (-)
G1209807 tmco6 non-coding upstream 92081 6580092 ~ 6581399 (-)
G1209836 NA non-coding upstream 137026 6625037 ~ 6625448 (-)
G1209837 LOC100136012 non-coding upstream 138533 6626544 ~ 6626763 (-)
G1209275 LOC106604892 other downstream 334385 6145946 ~ 6150661 (-)
G1209268 NA other downstream 345009 6139360 ~ 6140037 (-)
G1208831 NA other downstream 618096 5866322 ~ 5866950 (-)
LOC110489463 LOC106601388 other downstream 942575 5541035 ~ 5542569 (-)
LOC110488599 LOC106604914 other downstream 1286842 4982188 ~ 5198387 (-)
G1209763 NA other upstream 26200 6514211 ~ 6515936 (-)
G1211559 LOC106611856 other upstream 876286 7364297 ~ 7365733 (-)
LOC110488691 NA other upstream 1379989 7664270 ~ 7877610 (-)
si:ch73-233f7.1 LOC106604791 other upstream 1443284 7924328 ~ 7932142 (-)
G1212070 NA other upstream 2042718 8530729 ~ 8533635 (-)

Expression

si:zfos-741a10.3(LOC106593898) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
End of interactive chart.

si:zfos-741a10.3(LOC106593898) Expression in each Bioproject

Bar chart with 20 bars.
si:zfos-741a10.3(LOC106593898) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.

Co-expression Network