LOC110488658 (LOC106604872)


Basic Information

Item Value
gene id LOC110488658
gene name LOC106604872
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 7175176 ~ 7228229 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942769.1
TCCCGACCCGTGCTGGTGATAAATATAAAATTGTGCCTTCAAGTTGCTGAACCTGCCCTGACGTGATATATATTGTTTATTATCTCAGATGCAGTATTTTGTCGCTATAGCTAAATATTAACTCTAACTTATGCTGCTCACGATTTCTCCCGATGTCTGACGAAGGAAGCGACAGCGCCGAGCTAGCAGAGCTCCGgtgctctccctccccatctccaccCGGGCTCCCCGgaaccccctctcctccactgccGCCAGACTTCTCCTCCAGTCCCCCGGTGCTTCGAGACCCAGCCCCGTTACCCCAGGACTGCCTCCGCCCGTCTCCAGAGCGCTGCAAACCCGGGGACTCCCCGCGCTGTACCCTGCCAAAGTTAACCCAGCGACTGACGAAGACGGGCTCTCAGTTCCGCCAGAGACAGAATGCGCGCTTAACAGCTGCGGCGGACAACGGGCGCGATGCCCTCTCTCCAAAGCGCAGAGACGGAGACACCACCTCGGCAACGTTTCAGGACCTTGGACAGCAACTCCCCCGCGGACAGGACCGAGAGTATTACCACTGCACTAATCAGCTCCTAGAGCCCCAGCGAGACAGCAGTGAGACCCAGCCACCAGTGGAAGCAATGCAGCGGAGACACACCACGCTGAGGGAGAAGGGGCGTCGCCAGGCTGTGCGAGGCCCAGCCTACATGTTTAACGAGCGTGGCTCGGCCCTGACGCCGGAGGAAGAGGGTTTCCTTGACGCTGCCGAGTACGGCAACATCCCCGTGGTCcgtaagatgctggaggagtccAAGACCCTCAACTTCAACTGTGTGGACTACATGGGCCAGAATGCATTGCAGCTGGCGGTGGGCAATGAACACCTGGAAGTGACTGAGCTGTTGCTAAAGATGGATGGGCTAGCCAGAGTGGGCGACGGGCTCTTATTGGCTATCTCTAAAGGGTATGTGCGTATCGTGGAAGCCATATTGGCGAACCCGGCGTTCAGCCAAGGGCTGCGGCTCACCCAGAGTCCCCTCGAACAGGAGCTACGGGATGATGATTTTTACGCTTACGATGAAGACGGGACACGCTTTTCCCACGACGTCACCCCAGTCATCCTAGCAGCACACTGTCAGGAGTATGAGATTGTGCATATTCTGCTCACCAAGGGGGCCCGCATCGAGAGGCCTCATGACTACTTCTGTAAGTGCAATGAGTGTGTAGAGAAGCAGAAGAGAGACTCGTTCAGCCACTCCCGCTCCAGGATGAATGCTTATAAAGGGCTGGCCAGTGCTGCCTACCTGTCCCTGAGCAGTGAAGACCCTGTCCTCACCGCCCTGGAGCTCAGCAACGAACTGGCCAGACTGGCTAACATAGAGACTGAGTTTAAGaaTGACTACAGGAAGTTGTCCATGCAGTGTAAGGACTTTGTAGTGGGGGTGTTGGACCAgtgcagagacacagaggaggtgGAGGCCATCTTGAACGGAGACGTGGACAATGCCCCGCCCAGTGACAACAACCGCCCCTGCCTCGAACGCGTCAAATTGGCCATCAAATACGAGGTCAAGAAGtTTGTGGCGCACCCTAACTGCCAGCAGCAGCTGCTGACTATCTGGTATGAGAACCTGTCAGGTCTGAGGCAGCAGTCCATCGGGGTCAAGTGTTGGACTGTGCTAGGGGTCACCGTGGGACTGCCCTTCCTGGCTATTGCCTACTGGATCATGCCCTGCAGCAAGCTGGGTCAGATCCTGAGAAGTCCCTTCATGAAGTTTGTGGCTCACGCAGTGTCCTTCACCCTCTTCCTGGGCCTGCTGGTCATCAACGCCTCGGACCGCTTCGAGGGGGTCAGGAACCTGCCCAACGAGACCATCACTGACCACCCTCGCCAGGTGTTCCGGGTCAAGACCACTCAGTTCTCATGGACCGAGATGCTCATCATGAAATGCGTGCTGGgtaTGATCTGGTCGGAGGTCAAGGAGATCTGGGTGGACGGTCCTAGAGAGTATGTGATGCACTTGTGGAATGTGTTAGACTTCGGCATGTTGTCTATCTTTGTGGCTTCGTTCACCGCTCGGTTCATGGCCTTCCTCAAGGCCTCGAAGGCCCAGCTGTACGTCGACCAGTTTGTCACCGACGAAGACATCCGCAACGCATCACTACCTACAGAGGTAGCCTACTACACCTATGCCAGGAATAAGTGGCGTCCATCGGACCCCCAGATCATCTCAGAAGGTCTGTATGCCATTGCTGTGGTGCTGAGTTTCTCCCGCATCGCCTACATcctgccagccaacgagagcttcGGCCCCCTCCAGATCTCCCTGGGCCGGACGGTGAAGGACATCTTCAAGTTCATGGTCATCTTCATTATGGTGTTTGTGGCCTTCATGATCGGCATGTTCAACCTCTACTCTTATTACCTAGGAGCCAAGTACAACCCTGCCTTCACCACGGTGGAGGAGAGCTTTAAGACTCTGTTCTGGTCCATCTTTGGTCTGTCGGAGGTGATCTCCGTGGTCCTGAAGTATGACCATAAGTTCATAGAGAATATTGGCTATGTGCTGTTTGGGGTCTATAACGTCACTATGGTGGTGGTTCTACTCAACATGCTCATCGCTATGATCAATAGCTCCTACCAAGAGATAGAGACAGATGCAGATGTAGAGTGGAAGTTTGCCCGTGCCAAGCTGTGGATGTCCTACTTTGACGAGGGTCGCACTCTGCCCGCTCCTTTCAACATGGTGCCTTCTCCCAAATCCTGGTACTACCTGGTCCTCCGCACCAAAGCCTGCATCGTTCACCTCTGCAAGGCCAAGGGGCGTCGCCACGACAACGAGCTAGAGATGGGCATGCTTAACCCACGACTCAAGGGCAAACGCTACAGAGCCCACGGTCGACCACGAGAGGAGTCCACTCTCAGAAAACCCATCAAACATCCCACCAGATACCAGAAGATCATGAAGCGTCTCATTAAGCGCTATGTTCTGAAAGCTCAGGTTGACAGGGAGAACGATGAAGTCAATGAAGGGGAACTGAAGGAGATCAAGCAGGACATCTCCAGCCTGCGCTATGAGCTCCTGGAGGAGAAGTCTCAGGCCACCGGAGAACTGGCTGACCTCATCACACAACTCAGTGACACATTTGTCAAGAACGCCACCAAAAAAAAcctaagagagaggggagaaggggtagGAGAGAGGCGTGGGGGAGGCATGAAaatagagggagagtgagaggtggggggaaagaggggagaagagaaagggggaggggaagagaactGGTGGACAGATAGAGAAttacagagaaagagcgagagggtgatggagagagtgGATGAAAAGGTGGTCAGGAATGAGAGTTGAAAGAGTGGCTTTCTGGGGAGTAGATGCCCTGATCTAAttagtggagggaggagagtgagataggacaggaggagaagagagaaagggaggagatcAGTGGgacggagggagaagagaggaggcaggagagaggaatagtgacagagggaggaggcTCTGAACAGCGCGAGGGGAATATAGGGGATTGTTTAGAGTAGAATTCCGAGGCAGCAACGAAAGACGACCCACACAGCCAAACTACATCAGctcaacgagagagagagagagagaaacagagagagagagagagagaaacacagagagagagagagaga
>TU1382127
GCCCTGATCTAAttagtggagggaggagagtgagataggacaggaggagaagagagaaagggaggagatcAGTGGgacggagggagaagagaggaggcaggagagaggaatagtgacagagggaggaggcTCTGAACAGCGCGAGGGGAATATAGGGGATTGTTTAGAGTAGAATTCCGAGGCAGCAACGAAAGACGACCCACACAGCCAAACTACATCAGctcaacgagagagagagagagagaaacagagagagagagagagagaaacacagagagagagagagagagagagaaacacacagagagagagagagagaaagttgaaTGGTTTTCTGTAACTGCAGACAGCTAGCCCAGGGTGTCTTTACCTGAAGTATTGTGCCATATAGCAGTCCACTGTTTCAGGAAGATAAATATAATGACCCTTTTTTATAGAGCAGGCAATCTAATTAACACATTGGCCAATGGCCATATATTCACACATATACGGAATGAGTTCACACACATACTGAATTATTCATTTGTTTTCAGACACCCAGTGGAGGTTGCACAAGATTTTTGAGTTCATTGAAATAGCATTTGAAACTCTGAAGTCGGAATCTGTAGCGGTGAAACTGTCAAGTCCGTTTACGATATTacaacaataaagacattacctCAAACAAAGAACCCCTCGGACATCATTGCAAGCACGATAGAAGTGCAGAATgtcttcttttttattttttaccca

Function

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005262 calcium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942769.1 False 3667 mRNA 0.55 12 7175176 7227756
TU1382127 True 735 lncRNA 0.44 2 7227468 7228229

Neighbor

gene id symbol gene type direction distance location
LOC118938692 LOC106611811 coding upstream 88460 7083183 ~ 7087463 (+)
LOC110488657 LOC106604826 coding upstream 93183 6940410 ~ 7081993 (+)
dock2 LOC106604826 coding upstream 237266 6933060 ~ 6937910 (+)
LOC110488650 LOC106611908 coding upstream 288651 6845220 ~ 6886525 (+)
LOC110488646 LOC106604864 coding upstream 365094 6765164 ~ 6810082 (+)
LOC110488659 NA coding downstream 20023 7247779 ~ 7249658 (+)
LOC110488661 diaph1 coding downstream 23609 7251365 ~ 7385487 (+)
LOC118938693 NA coding downstream 228126 7455882 ~ 7459050 (+)
fgf18a LOC106604790 coding downstream 748994 7976750 ~ 7986393 (+)
LOC110488706 NA coding downstream 1097545 8325301 ~ 8335960 (+)
G1210049 NA non-coding upstream 141358 7000733 ~ 7033818 (+)
G1210050 NA non-coding upstream 166529 7005113 ~ 7008647 (+)
G1210015 NA non-coding upstream 168691 7002887 ~ 7006485 (+)
G1210338 NA non-coding downstream 17306 7245062 ~ 7245273 (+)
G1210496 NA non-coding downstream 188003 7415759 ~ 7417025 (+)
G1210497 NA non-coding downstream 189322 7417078 ~ 7417464 (+)
G1210501 NA non-coding downstream 196812 7424568 ~ 7424923 (+)
G1209572 NA other upstream 418365 6752864 ~ 6756811 (+)
G1209622 NA other upstream 423462 6751352 ~ 6751714 (+)
G1209615 LOC106604863 other upstream 430386 6743934 ~ 6744790 (+)
G1208884 NA other upstream 1267407 5903921 ~ 5907769 (+)
G1207553 NA other upstream 2252616 4922141 ~ 4922560 (+)
G1210502 NA other downstream 204621 7432377 ~ 7435168 (+)
G1210520 LOC106604879 other downstream 232092 7459848 ~ 7481225 (+)
G1210695 NA other downstream 583375 7811131 ~ 7811872 (+)
G1210708 LOC106604831 other downstream 601067 7828823 ~ 7836843 (+)

Expression


Co-expression Network