Item | Value |
---|---|
gene id | LOC110488788 |
gene name | snx12 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048578.1 |
NCBI id | CM023232.3 |
chromosome length | 43310081 |
location | 11044777 ~ 11057088 (-) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
snx12 | Predicted to enable phosphatidylinositol-3-phosphate binding activity. Predicted to be involved in endocytic recycling and late endosome to Golgi transport. Predicted to be part of retromer complex. Predicted to be active in early endosome membrane. Orthologous to human SNX12 (sorting nexin 12). |
description |
---|
sorting nexin-12 isoform X1 |
id | name | namespace |
---|---|---|
GO:0007154 | cell communication | biological_process |
GO:0035091 | phosphatidylinositol binding | molecular_function |
id | description |
---|---|
K17918 | SNX3_12; sorting nexin-3/12 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036942942.1 | False | 2747 | mRNA | 0.42 | 7 | 11044777 | 11057087 |
XM_036942943.1 | False | 2744 | mRNA | 0.42 | 7 | 11044777 | 11057087 |
XM_036942940.1 | False | 2756 | mRNA | 0.42 | 7 | 11044777 | 11057088 |
XM_036942941.1 | True | 2753 | mRNA | 0.42 | 7 | 11044777 | 11057088 |
11,040,000
11,042,000
11,044,000
11,046,000
11,048,000
11,050,000
11,052,000
11,054,000
11,056,000
11,058,000
11,060,000
11,062,000
11,064,000
11,066,000
11,068,000
NC_048578.1
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gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110488786 | slc7a3 | coding | downstream | 3806 | 11025198 ~ 11040971 (-) |
ubl3b | ubl3 | coding | downstream | 22850 | 10966335 ~ 11021927 (-) |
LOC110488782 | LOC106604707 | coding | downstream | 56241 | 10981592 ~ 10988536 (-) |
LOC110488779 | LOC106604712 | coding | downstream | 99332 | 10940179 ~ 10945445 (-) |
LOC110488778 | LOC106604715 | coding | downstream | 122869 | 10918386 ~ 10921908 (-) |
LOC110488790 | LOC106604703 | coding | upstream | 11710 | 11068798 ~ 11084699 (-) |
c14hxorf65 | cssa05hxorf65 | coding | upstream | 32850 | 11089938 ~ 11093411 (-) |
LOC110487731 | LOC106604701 | coding | upstream | 36331 | 11093419 ~ 11095894 (-) |
LOC110488794 | rap2c | coding | upstream | 40653 | 11097741 ~ 11101556 (-) |
LOC118938748 | NA | coding | upstream | 166304 | 11223392 ~ 11229760 (-) |
G1214377 | LOC106604708 | non-coding | downstream | 64146 | 10976635 ~ 10980631 (-) |
G1214435 | NA | non-coding | downstream | 83603 | 10960502 ~ 10961174 (-) |
G1214402 | NA | non-coding | downstream | 86467 | 10882396 ~ 10958310 (-) |
G1214328 | NA | non-coding | downstream | 235266 | 10809121 ~ 10809511 (-) |
G1214484 | NA | non-coding | upstream | 46239 | 11103327 ~ 11103529 (-) |
G1214485 | NA | non-coding | upstream | 48236 | 11105324 ~ 11106443 (-) |
G1214510 | NA | non-coding | upstream | 92102 | 11149190 ~ 11149458 (-) |
G1214513 | NA | non-coding | upstream | 95063 | 11152151 ~ 11152442 (-) |
G1214515 | NA | non-coding | upstream | 96593 | 11153681 ~ 11154244 (-) |
LOC110488774 | LOC106604718 | other | downstream | 195194 | 10844755 ~ 10849852 (-) |
LOC110488761 | NA | other | downstream | 773907 | 10192267 ~ 10270937 (-) |
LOC110488750 | LOC106604745 | other | downstream | 1535270 | 9504194 ~ 9510958 (-) |
LOC110488746 | LOC106604746 | other | downstream | 1597780 | 9441509 ~ 9475071 (-) |
G1212484 | NA | other | downstream | 1664647 | 9379550 ~ 9380130 (-) |
LOC110488799 | LOC102314576 | other | upstream | 304423 | 11361504 ~ 11364211 (-) |
LOC110488801 | rab33b | other | upstream | 334920 | 11390055 ~ 11393328 (-) |
G1214997 | NA | other | upstream | 517719 | 11574807 ~ 11575707 (-) |
G1215349 | NA | other | upstream | 836934 | 11894022 ~ 11896801 (-) |
G1215447 | NA | other | upstream | 907405 | 11964493 ~ 11976777 (-) |