Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110488801 |
| gene name | rab33b |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048578.1 |
| NCBI id | CM023232.3 |
| chromosome length | 43310081 |
| location | 11390055 ~ 11393328 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| rab33b | Enables GTPase activity. Involved in several processes, including protein localization to Golgi apparatus; regulation of Golgi organization; and regulation of vesicle-mediated transport. Located in Golgi lumen. Implicated in Smith-McCort dysplasia. |
| description |
|---|
| ras-related protein Rab-33B-like isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021561194.2 | False | 2866 | mRNA | 0.44 | 2 | 11390055 | 11393328 |
| TU1387271 | False | 1829 | lncRNA | 0.38 | 1 | 11390062 | 11391890 |
| TU1387274 | True | 890 | TUCP | 0.54 | 2 | 11392008 | 11393305 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| mgst2 | mgst2 | coding | downstream | 24201 | 11364601 ~ 11365854 (-) |
| LOC110488799 | LOC102314576 | coding | downstream | 25844 | 11361504 ~ 11364211 (-) |
| LOC110488796 | LOC106611772 | coding | downstream | 87101 | 11299273 ~ 11302954 (-) |
| LOC110488795 | LOC106604699 | coding | downstream | 112368 | 11239258 ~ 11277687 (-) |
| LOC118938748 | NA | coding | downstream | 160295 | 11223392 ~ 11229760 (-) |
| LOC110488803 | LOC106604691 | coding | upstream | 5547 | 11398875 ~ 11413521 (-) |
| LOC118938776 | NA | coding | upstream | 9328 | 11402656 ~ 11402791 (-) |
| nocta | LOC106604687 | coding | upstream | 68687 | 11462015 ~ 11489186 (-) |
| LOC118938696 | NA | coding | upstream | 560051 | 11953379 ~ 11983501 (-) |
| LOC110488809 | LOC106604685 | coding | upstream | 865184 | 12258512 ~ 12276740 (-) |
| G1214819 | NA | non-coding | downstream | 15809 | 11373853 ~ 11374246 (-) |
| G1214828 | LOC100194703 | non-coding | downstream | 16410 | 11373322 ~ 11373645 (-) |
| G1214804 | NA | non-coding | downstream | 57503 | 11329912 ~ 11332552 (-) |
| G1214802 | LOC106604697 | non-coding | downstream | 60985 | 11326385 ~ 11329070 (-) |
| G1214762 | NA | non-coding | downstream | 130408 | 11258718 ~ 11259647 (-) |
| G1214859 | NA | non-coding | upstream | 50350 | 11443678 ~ 11443947 (-) |
| G1214858 | NA | non-coding | upstream | 51506 | 11444834 ~ 11446745 (-) |
| G1214861 | NA | non-coding | upstream | 62423 | 11455751 ~ 11455951 (-) |
| G1214865 | NA | non-coding | upstream | 66119 | 11459447 ~ 11459684 (-) |
| G1214919 | NA | non-coding | upstream | 152433 | 11545761 ~ 11545977 (-) |
| LOC110488774 | LOC106604718 | other | downstream | 540472 | 10844755 ~ 10849852 (-) |
| LOC110488761 | NA | other | downstream | 1119185 | 10192267 ~ 10270937 (-) |
| LOC110488750 | LOC106604745 | other | downstream | 1880548 | 9504194 ~ 9510958 (-) |
| LOC110488746 | LOC106604746 | other | downstream | 1943058 | 9441509 ~ 9475071 (-) |
| G1214997 | NA | other | upstream | 181479 | 11574807 ~ 11575707 (-) |
| G1215349 | NA | other | upstream | 500694 | 11894022 ~ 11896801 (-) |
| G1215447 | NA | other | upstream | 571165 | 11964493 ~ 11976777 (-) |
| G1216013 | NA | other | upstream | 1084691 | 12478019 ~ 12478467 (-) |
| LOC110488811 | LOC106604684 | other | upstream | 1170597 | 12563911 ~ 12568719 (-) |
| LOC110488801 | rab33b | other | upstream | 118 | 11390055 ~ 11393328 (-) |
