nocta (LOC106604687)


Basic Information

Item Value
gene id nocta
gene name LOC106604687
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 11462015 ~ 11489186 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942952.1
GTGTGTTACTGTCCACCTTCCACTCCCCTGTGTGTTTTCTTTGTGTCCGGATACATCAGTCTGCCAGCTCCAACTGACATATGACAAGCCATGGTGATGACCTcatatcctcccctcccccttcctttcctttctctcccttcccttgtCCTCCCATCAGTCTCACACAGACTAACTGTGTCTAAACAGTCACGCTGTCATTAGCTGGAATGTCACACTGacacagaaacagagggagggactgagacagagggggagagagactgagtacgACAAACTGAAAGCAGCAGAGAACTAAAGTGGAAGCACTCGGATTGTCCGAAAAAACGACTGAGGGCGAAAAAAAATCAGAAGAAACTGAAGTACAAGGAGGAGAAAGACAGTGAAGGAGTCATCAAAACAGCGAGAGGAATAGAGCTAGAGAGTAGTGCTGCTGTTCTCCGACACCTAGACAAAACAGTGTGTGTCTGAtgggcagcagtagcagcagcaggctGTTTGGTACCCTGGCCCAGACCCTGAACAGTGCTCCACTGGCCCAGCAGGACTACGACCCAGAGCACCAGGACTCAGACCAGGACCCGGAGGGCCTGGAGCAGGCCGACCCAGACCAGCTGCTCAGGGAGTGCGAGGAGATCCTCCAGAACCGGCCGGCCCGGCCACACAGGGACCTGGTCTACCCTGTAGACCCTAAACACCAGCACCAATACAGGAACAATGAGCAACAGCAAACACCATCTATACGGGTCATGACATGGAACATCCTAGCTCAAGctctaGGGGAGGGTAAGGATGGCTTTGTGCAATGTCCTCTGGATGCTCTGAACTGGGCTGAGAGGAAGTACCTGATCCTGGAAGAGATCCTCACCTACCGCCCTGACATCCTGTGTCTCCAGGAAGTGGACCACTACTACGACACCTTCCAGCCCATCTTGGCCAGCCTGGGCTACCACAGCACATTCCTTCCCAAGCcctggtccccctgcctggaagTGGCCAGCAACAACGGCCCTGACGGCTGTGCGCTCTTCTACCGCCGTGCACGCTTCagcctcctccacacctcccacCTGCGCCTCTCTGCCATGATGCTGCCTACCAATCAGGTGGCCATCGTGCAGACGCTGCGTTGCCGGGAGACGGGCCAGAGGCTGTGCGTGGCTGTGACCCACCTGAAGGCGAGGAGTGGCTGGGAAAGGCTGAGGGGGGCCCAAGGGGCTGACCTGCTGCAGAGCCTAAAGGCTATCACCTCGAGGGCGGCTGGGTCAGACCCAGTCAGTAGGGGACCTGGGGGAGGGAGTGGGACAGAGGGGGTGCCTCTGATAGTGTGTGGGGACTTTAACGCTGAGCCCTCAGAGGACGTGTACAGGCGTTTTATCTCCTCCCCCCTGGGTCTGGACTCCGCCTATAAGCTGCTGAGTGCAGATGGGCAGACGGAGCCGGCCTACACTACCTGGAAGATCCGTCCCTCAGGGGAGAGCTGCAGTACCCTGGACTACATCTGGTACTCTCACGGTGCTTTCACTGTGGACACCCTGCTGGACATACCCACTGAGGAACAGATAGGACCTGACCGCCTGCCCTCATACCACTACCCCTCCGACCACCTCTCACTGCTCTGTGATGTCAGCTTCAGGGAGCCACGGGATCAACCTCATAGGCTGATGTAGGTTGCCTATCCGAGGCTTCGTGCAATAGGGTCTCAGTTCAGGACAGTCCTGGAAGAATCGACTGGATCAAACAACATGTGTGATACTGGAGAAGTGAATGCTTATTTTACTTGAACTGGTGCTGAAATTTGATTCTGCAGACTTGACACCAGAGagtagttatttatttattttttaaaccagTACTTGTTTTCTGTCAAGTGAGATGTTATCCCTCATTATCGTTTTTCTTCATATGAGGTGTATAACTGGTTTAAAGTAATTGGAGAATAGGATCCTATCAATACTGTAACTGCTATTATTTTCAGTGCTGTGGCAACAAGAATGCCAATGAGCATGTCAAAATAAAATACTTACATTCTGACA
>XM_036942953.1
GTGTGTTACTGTCCACCTTCCACTCCCCTGTGTGTTTTCTTTGTGTCCGGATACATCAGTCTGCCAGCTCCAACTGACATATGACAAGCCATGGTGATGACCTcatatcctcccctcccccttcctttcctttctctcccttcccttgtCCTCCCATCAGTCTCACACAGACTAACTGTGTCTAAACAGTCACGCTGTCATTAGCTGGAATGTCACACTGacacagaaacagagggagggactgagacagagggggagagagactgagtacgACAAACTGAAAGCAGCAGAGAACTAAAGTGGAAGCACTCGGATTGTCCGAAAAAACGACTGAGGGCGAAAAAAAATCAGAAGAAACTGAAGTACAAGGAGGAGAAAGACAGTGAAGGAGTCATCAAAACAGCGAGAGGAATAGAGCTAGAGAGTAGTGCTGCTGTTCTCCGACACCTAGACAAAACAGTGGTGAGGATTTCTCTAAACCACAGTGACTGTGTCTGAtgggcagcagtagcagcagcaggctGTTTGGTACCCTGGCCCAGACCCTGAACAGTGCTCCACTGGCCCAGCAGGACTACGACCCAGAGCACCAGGACTCAGACCAGGACCCGGAGGGCCTGGAGCAGGCCGACCCAGACCAGCTGCTCAGGGAGTGCGAGGAGATCCTCCAGAACCGGCCGGCCCGGCCACACAGGGACCTGGTCTACCCTGTAGACCCTAAACACCAGCACCAATACAGGAACAATGAGCAACAGCAAACACCATCTATACGGGTCATGACATGGAACATCCTAGCTCAAGctctaGGGGAGGGTAAGGATGGCTTTGTGCAATGTCCTCTGGATGCTCTGAACTGGGCTGAGAGGAAGTACCTGATCCTGGAAGAGATCCTCACCTACCGCCCTGACATCCTGTGTCTCCAGGAAGTGGACCACTACTACGACACCTTCCAGCCCATCTTGGCCAGCCTGGGCTACCACAGCACATTCCTTCCCAAGCcctggtccccctgcctggaagTGGCCAGCAACAACGGCCCTGACGGCTGTGCGCTCTTCTACCGCCGTGCACGCTTCagcctcctccacacctcccacCTGCGCCTCTCTGCCATGATGCTGCCTACCAATCAGGTGGCCATCGTGCAGACGCTGCGTTGCCGGGAGACGGGCCAGAGGCTGTGCGTGGCTGTGACCCACCTGAAGGCGAGGAGTGGCTGGGAAAGGCTGAGGGGGGCCCAAGGGGCTGACCTGCTGCAGAGCCTAAAGGCTATCACCTCGAGGGCGGCTGGGTCAGACCCAGTCAGTAGGGGACCTGGGGGAGGGAGTGGGACAGAGGGGGTGCCTCTGATAGTGTGTGGGGACTTTAACGCTGAGCCCTCAGAGGACGTGTACAGGCGTTTTATCTCCTCCCCCCTGGGTCTGGACTCCGCCTATAAGCTGCTGAGTGCAGATGGGCAGACGGAGCCGGCCTACACTACCTGGAAGATCCGTCCCTCAGGGGAGAGCTGCAGTACCCTGGACTACATCTGGTACTCTCACGGTGCTTTCACTGTGGACACCCTGCTGGACATACCCACTGAGGAACAGATAGGACCTGACCGCCTGCCCTCATACCACTACCCCTCCGACCACCTCTCACTGCTCTGTGATGTCAGCTTCAGGGAGCCACGGGATCAACCTCATAGGCTGATGTAGGTTGCCTATCCGAGGCTTCGTGCAATAGGGTCTCAGTTCAGGACAGTCCTGGAAGAATCGACTGGATCAAACAACATGTGTGATACTGGAGAAGTGAATGCTTATTTTACTTGAACTGGTGCTGAAATTTGATTCTGCAGACTTGACACCAGAGagtagttatttatttattttttaaaccagTACTTGTTTTCTGTCAAGTGAGATGTTATCCCTCATTATCGTTTTTCTTCATATGAGGTGTATAACTGGTTTAAAGTAATTGGAGAATAGGATCCTATCAATACTGTAACTGCTATTATTTTCAGTGCTGTGGCAACAAGAATGCCAATGAGCATGTCAAAATAAAATACTTACATTCTGACA
>XM_036942954.1
cactgagcagtcCAGTCACATCCGCTTGCTCCGGAACATTCTTTCACGTCAATACATCAGTTTCAGAAGAGTCCAATCTCTCTCAGGAGAAAGAACccctggagaaggagagagaaacagaggagaggcgAGAGTGCTCTATGTAGCTCCATGGAGAGAGCCTGGACACTGGGTCGAGCGTGAGTCAAAAAGCAAGATTTTAAAAAGAGGGCGTGTGTGATTCTTCTCCATCGACTCTACGTTTTCTTTTGTGTCTGAtgggcagcagtagcagcagcaggctGTTTGGTACCCTGGCCCAGACCCTGAACAGTGCTCCACTGGCCCAGCAGGACTACGACCCAGAGCACCAGGACTCAGACCAGGACCCGGAGGGCCTGGAGCAGGCCGACCCAGACCAGCTGCTCAGGGAGTGCGAGGAGATCCTCCAGAACCGGCCGGCCCGGCCACACAGGGACCTGGTCTACCCTGTAGACCCTAAACACCAGCACCAATACAGGAACAATGAGCAACAGCAAACACCATCTATACGGGTCATGACATGGAACATCCTAGCTCAAGctctaGGGGAGGGTAAGGATGGCTTTGTGCAATGTCCTCTGGATGCTCTGAACTGGGCTGAGAGGAAGTACCTGATCCTGGAAGAGATCCTCACCTACCGCCCTGACATCCTGTGTCTCCAGGAAGTGGACCACTACTACGACACCTTCCAGCCCATCTTGGCCAGCCTGGGCTACCACAGCACATTCCTTCCCAAGCcctggtccccctgcctggaagTGGCCAGCAACAACGGCCCTGACGGCTGTGCGCTCTTCTACCGCCGTGCACGCTTCagcctcctccacacctcccacCTGCGCCTCTCTGCCATGATGCTGCCTACCAATCAGGTGGCCATCGTGCAGACGCTGCGTTGCCGGGAGACGGGCCAGAGGCTGTGCGTGGCTGTGACCCACCTGAAGGCGAGGAGTGGCTGGGAAAGGCTGAGGGGGGCCCAAGGGGCTGACCTGCTGCAGAGCCTAAAGGCTATCACCTCGAGGGCGGCTGGGTCAGACCCAGTCAGTAGGGGACCTGGGGGAGGGAGTGGGACAGAGGGGGTGCCTCTGATAGTGTGTGGGGACTTTAACGCTGAGCCCTCAGAGGACGTGTACAGGCGTTTTATCTCCTCCCCCCTGGGTCTGGACTCCGCCTATAAGCTGCTGAGTGCAGATGGGCAGACGGAGCCGGCCTACACTACCTGGAAGATCCGTCCCTCAGGGGAGAGCTGCAGTACCCTGGACTACATCTGGTACTCTCACGGTGCTTTCACTGTGGACACCCTGCTGGACATACCCACTGAGGAACAGATAGGACCTGACCGCCTGCCCTCATACCACTACCCCTCCGACCACCTCTCACTGCTCTGTGATGTCAGCTTCAGGGAGCCACGGGATCAACCTCATAGGCTGATGTAGGTTGCCTATCCGAGGCTTCGTGCAATAGGGTCTCAGTTCAGGACAGTCCTGGAAGAATCGACTGGATCAAACAACATGTGTGATACTGGAGAAGTGAATGCTTATTTTACTTGAACTGGTGCTGAAATTTGATTCTGCAGACTTGACACCAGAGagtagttatttatttattttttaaaccagTACTTGTTTTCTGTCAAGTGAGATGTTATCCCTCATTATCGTTTTTCTTCATATGAGGTGTATAACTGGTTTAAAGTAATTGGAGAATAGGATCCTATCAATACTGTAACTGCTATTATTTTCAGTGCTGTGGCAACAAGAATGCCAATGAGCATGTCAAAATAAAATACTTACATTCTGACA
>XM_036942950.1
GGCAGTTTGAATCAGGGGAATTCTTTGGGGAAGTTGCTTTAAATCTCTCAATCAAATGCGGAATGTGGTTTGATTACGGTTGTGACAGAACCGGGGCGAGACATGTATCCGGTTCGTCGGTGTTCGTTCCTTCACCGAGACTTGGCAGCGTTGTGTCTCTCCTCCCTGAGGCCGGCAGCTAAGAAACAGACACCTCCGAAGAAATTATCCCTCCCGGCTCCACGGCACTGTCACACCGGAGGAGAAGGCGGCAAGCCACAGGTGAAATCACGCGGCTCATCGCCCGCGTCAGTGAGCTCTATACCAGTGTGTCTGAtgggcagcagtagcagcagcaggctGTTTGGTACCCTGGCCCAGACCCTGAACAGTGCTCCACTGGCCCAGCAGGACTACGACCCAGAGCACCAGGACTCAGACCAGGACCCGGAGGGCCTGGAGCAGGCCGACCCAGACCAGCTGCTCAGGGAGTGCGAGGAGATCCTCCAGAACCGGCCGGCCCGGCCACACAGGGACCTGGTCTACCCTGTAGACCCTAAACACCAGCACCAATACAGGAACAATGAGCAACAGCAAACACCATCTATACGGGTCATGACATGGAACATCCTAGCTCAAGctctaGGGGAGGGTAAGGATGGCTTTGTGCAATGTCCTCTGGATGCTCTGAACTGGGCTGAGAGGAAGTACCTGATCCTGGAAGAGATCCTCACCTACCGCCCTGACATCCTGTGTCTCCAGGAAGTGGACCACTACTACGACACCTTCCAGCCCATCTTGGCCAGCCTGGGCTACCACAGCACATTCCTTCCCAAGCcctggtccccctgcctggaagTGGCCAGCAACAACGGCCCTGACGGCTGTGCGCTCTTCTACCGCCGTGCACGCTTCagcctcctccacacctcccacCTGCGCCTCTCTGCCATGATGCTGCCTACCAATCAGGTGGCCATCGTGCAGACGCTGCGTTGCCGGGAGACGGGCCAGAGGCTGTGCGTGGCTGTGACCCACCTGAAGGCGAGGAGTGGCTGGGAAAGGCTGAGGGGGGCCCAAGGGGCTGACCTGCTGCAGAGCCTAAAGGCTATCACCTCGAGGGCGGCTGGGTCAGACCCAGTCAGTAGGGGACCTGGGGGAGGGAGTGGGACAGAGGGGGTGCCTCTGATAGTGTGTGGGGACTTTAACGCTGAGCCCTCAGAGGACGTGTACAGGCGTTTTATCTCCTCCCCCCTGGGTCTGGACTCCGCCTATAAGCTGCTGAGTGCAGATGGGCAGACGGAGCCGGCCTACACTACCTGGAAGATCCGTCCCTCAGGGGAGAGCTGCAGTACCCTGGACTACATCTGGTACTCTCACGGTGCTTTCACTGTGGACACCCTGCTGGACATACCCACTGAGGAACAGATAGGACCTGACCGCCTGCCCTCATACCACTACCCCTCCGACCACCTCTCACTGCTCTGTGATGTCAGCTTCAGGGAGCCACGGGATCAACCTCATAGGCTGATGTAGGTTGCCTATCCGAGGCTTCGTGCAATAGGGTCTCAGTTCAGGACAGTCCTGGAAGAATCGACTGGATCAAACAACATGTGTGATACTGGAGAAGTGAATGCTTATTTTACTTGAACTGGTGCTGAAATTTGATTCTGCAGACTTGACACCAGAGagtagttatttatttattttttaaaccagTACTTGTTTTCTGTCAAGTGAGATGTTATCCCTCATTATCGTTTTTCTTCATATGAGGTGTATAACTGGTTTAAAGTAATTGGAGAATAGGATCCTATCAATACTGTAACTGCTATTATTTTCAGTGCTGTGGCAACAAGAATGCCAATGAGCATGTCAAAATAAAATACTTACATTCTGACA
>XM_036942951.1
caaactaaggaaACCATGCATGACATCAGACAGAAGACGTGTCCAACCATGATGTATACTGTGTGTCTGAtgggcagcagtagcagcagcaggctGTTTGGTACCCTGGCCCAGACCCTGAACAGTGCTCCACTGGCCCAGCAGGACTACGACCCAGAGCACCAGGACTCAGACCAGGACCCGGAGGGCCTGGAGCAGGCCGACCCAGACCAGCTGCTCAGGGAGTGCGAGGAGATCCTCCAGAACCGGCCGGCCCGGCCACACAGGGACCTGGTCTACCCTGTAGACCCTAAACACCAGCACCAATACAGGAACAATGAGCAACAGCAAACACCATCTATACGGGTCATGACATGGAACATCCTAGCTCAAGctctaGGGGAGGGTAAGGATGGCTTTGTGCAATGTCCTCTGGATGCTCTGAACTGGGCTGAGAGGAAGTACCTGATCCTGGAAGAGATCCTCACCTACCGCCCTGACATCCTGTGTCTCCAGGAAGTGGACCACTACTACGACACCTTCCAGCCCATCTTGGCCAGCCTGGGCTACCACAGCACATTCCTTCCCAAGCcctggtccccctgcctggaagTGGCCAGCAACAACGGCCCTGACGGCTGTGCGCTCTTCTACCGCCGTGCACGCTTCagcctcctccacacctcccacCTGCGCCTCTCTGCCATGATGCTGCCTACCAATCAGGTGGCCATCGTGCAGACGCTGCGTTGCCGGGAGACGGGCCAGAGGCTGTGCGTGGCTGTGACCCACCTGAAGGCGAGGAGTGGCTGGGAAAGGCTGAGGGGGGCCCAAGGGGCTGACCTGCTGCAGAGCCTAAAGGCTATCACCTCGAGGGCGGCTGGGTCAGACCCAGTCAGTAGGGGACCTGGGGGAGGGAGTGGGACAGAGGGGGTGCCTCTGATAGTGTGTGGGGACTTTAACGCTGAGCCCTCAGAGGACGTGTACAGGCGTTTTATCTCCTCCCCCCTGGGTCTGGACTCCGCCTATAAGCTGCTGAGTGCAGATGGGCAGACGGAGCCGGCCTACACTACCTGGAAGATCCGTCCCTCAGGGGAGAGCTGCAGTACCCTGGACTACATCTGGTACTCTCACGGTGCTTTCACTGTGGACACCCTGCTGGACATACCCACTGAGGAACAGATAGGACCTGACCGCCTGCCCTCATACCACTACCCCTCCGACCACCTCTCACTGCTCTGTGATGTCAGCTTCAGGGAGCCACGGGATCAACCTCATAGGCTGATGTAGGTTGCCTATCCGAGGCTTCGTGCAATAGGGTCTCAGTTCAGGACAGTCCTGGAAGAATCGACTGGATCAAACAACATGTGTGATACTGGAGAAGTGAATGCTTATTTTACTTGAACTGGTGCTGAAATTTGATTCTGCAGACTTGACACCAGAGagtagttatttatttattttttaaaccagTACTTGTTTTCTGTCAAGTGAGATGTTATCCCTCATTATCGTTTTTCTTCATATGAGGTGTATAACTGGTTTAAAGTAATTGGAGAATAGGATCCTATCAATACTGTAACTGCTATTATTTTCAGTGCTGTGGCAACAAGAATGCCAATGAGCATGTCAAAATAAAATACTTACATTCTGACA

Function

NR:

description
nocturnin-like

GO: NA

KEGG:

id description
K18764 NOCT, CCRN4L; nocturnin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942952.1 False 2036 mRNA 0.53 3 11462015 11465300
XM_036942953.1 False 2063 mRNA 0.53 3 11462015 11465300
XM_036942954.1 False 1823 mRNA 0.54 3 11462015 11465982
XM_036942950.1 False 1881 mRNA 0.55 4 11462015 11472983
XM_036942951.1 True 1635 mRNA 0.55 3 11462015 11489186
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110488803 LOC106604691 coding downstream 48494 11398875 ~ 11413521 (-)
LOC118938776 NA coding downstream 59224 11402656 ~ 11402791 (-)
LOC110488801 rab33b coding downstream 68687 11390055 ~ 11393328 (-)
mgst2 mgst2 coding downstream 96161 11364601 ~ 11365854 (-)
LOC110488799 LOC102314576 coding downstream 97804 11361504 ~ 11364211 (-)
LOC118938696 NA coding upstream 464193 11953379 ~ 11983501 (-)
LOC110488809 LOC106604685 coding upstream 769326 12258512 ~ 12276740 (-)
LOC110488811 LOC106604684 coding upstream 1074725 12563911 ~ 12568719 (-)
LOC110488815 LOC106604681 coding upstream 1098888 12588074 ~ 12669699 (-)
LOC110488813 LOC106611787 coding upstream 1202780 12691966 ~ 12696606 (-)
G1214865 NA non-coding downstream 2331 11459447 ~ 11459684 (-)
G1214861 NA non-coding downstream 6064 11455751 ~ 11455951 (-)
G1214858 NA non-coding downstream 15270 11444834 ~ 11446745 (-)
G1214859 NA non-coding downstream 18068 11443678 ~ 11443947 (-)
G1214919 NA non-coding upstream 56575 11545761 ~ 11545977 (-)
G1214921 NA non-coding upstream 58897 11548083 ~ 11548337 (-)
G1214931 NA non-coding upstream 66633 11555819 ~ 11556129 (-)
G1214994 NA non-coding upstream 83363 11572549 ~ 11572758 (-)
G1214996 NA non-coding upstream 85187 11574373 ~ 11574589 (-)
LOC110488774 LOC106604718 other downstream 612432 10844755 ~ 10849852 (-)
LOC110488761 NA other downstream 1191145 10192267 ~ 10270937 (-)
LOC110488750 LOC106604745 other downstream 1952508 9504194 ~ 9510958 (-)
G1214997 NA other upstream 85621 11574807 ~ 11575707 (-)
G1215349 NA other upstream 404836 11894022 ~ 11896801 (-)
G1215447 NA other upstream 475307 11964493 ~ 11976777 (-)
G1216013 NA other upstream 988833 12478019 ~ 12478467 (-)

Expression

nocta(LOC106604687) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 50.
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nocta(LOC106604687) Expression in each Bioproject

Bar chart with 21 bars.
nocta(LOC106604687) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network