XLOC_003109


Basic Information

Item Value
gene id XLOC_003109
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 474380 ~ 504829 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008375
TGCAAATATTCCCAATACATTCGCAAAGGAAGCAGATAAGAACAGAGAAATGGTTtggtaaaaaaagcatttttacttGTCCAAAAGTGAAAATAGTGTACAAAATATTTACAGATGTTTACTTTTGACGGTTGAACAAATAAAGATTTCTtaattttcaacaacaaaaacaactacaaGTCATCCAGTTTCAAATGCAACGCACAATTCAGCATGATCAGCATGAGACAGGTACTGTGACAGTACAGCCCATAACACTGACTGAAACACGAGGGATCTAATCAGACACTAAAACCATCAATACACTTTCTGCATTTTGTGcttcatgtttttaatattcccccatatatattattaatgtttttgagttgcattatgggatcttgatcttccCTCCAACAACTCTCAACCTGTAAAAGTGTGTGTTCTGCACgtgtccagtgtgtgtgtgtgttggtgttgtataTTACGCTACAGaagccttgtaataaactgcagcacatttactCTTATTctacacacttatttctctacatattattctctcttatacattatattattattttaaac
>TCONS_00008507
gatagatagatagatagatggatggaaggatggacggacggatggatagacagacagtcagacagacagaaaggtttGCATTATGTGTTGTTCAGATGAATTATTGATGTGCATTTTCTTGTACTTTGTGTATAAATAATACATCTGGATTTTCACACACGACTGCTGAAAACGCTGAcccaactaacaaacaaacaaactaacaaacaaacaaactaacaaacaaacaaacaaactaactaactaactaactaacatatTTATCCGAGCATCTGTCTTCATCACTCaacatgggtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtttatggcACCTGCAGAGACAGAAGAGTCTGAGGACAGATAGAGAGATGAATGTACAGGGAAAGCATGACTGTGCTGAAAACTCTGAGCAAATGGACATTCATGGCCACAGCAGCATGAAGAGTCAGCGGTGCGGGAGAGTCTGAAACTCCTGTCAAATAGGAGGCAAAAACAATTATTTCTCCACTGATGGAGCAGAATATTCCAGCTCGTCTCCCTCAATCAATACGTCCAGCTCTGCATCTGCTCATCTTAAGTAGAGAATGGGTGCGGAGAGAAATGATGAAGGAGAGCGTCTGCTGGATATATGGCTGGATATGAGGAGATAATCTGACATGGATTTCAGCAGCTCTTCTTGACTTTAAGTTTCTCCTTGTCCGTCAGACCCAGTGGACTCTTCATATCTGCTGCAGAGTGTTTATCTGTTTTACAAGCAGCTTTGCATCAGTGTCTCTGGCATAGAAATCAGACACACTTACAAAATTAATCTGCCGCTAGAACTTGAATTTTGTGACTAATTTGTGACATTTAACCCAATTTACATATGGAGCAGTTCAGTGTATGGttataaacaacaataaatgagTATGAATGAGATATGAAGCATGGGGTTCAAATCCAACTGTAAATtgtaatacagtatattatagtATGAAAGTACTGAATATAGACACAAGATCTCCTTCAGGCTGCAGATTTTCAACATGTACAGCTGATTGAAATGGATTAATTATTGCCCTGATCATGCAAATCAGCATTTCAACTGTTGAAGTATTTTCTTGTAACCATTTCCTGAATGTTTTGCTCATGCACTGTTCAACAACAtctgtaaatcagcagttttccacattttctgactaatatttttattttccctgtttttttctgtgtttgagttgcattatgggatcttgaccTTTTCTCTAACAACTTTCAACCTGTAAAAGTGTGTTCAAGTGTGTGTTCTGcatgtgtaatagtgtgcagtgctgtattgtgtgtgttggtgttgtacaTTACGCTACAGaagccttgtaataaactgcagcacatttactCTTATTctacacacttatttctctacatattattctctcttatacattatattattattttaaac
>TCONS_00006149
cacacacacacacacacactcctgcggTGTGTTGTCCCCGCCTCTGTCTCTATGAGTGAGTGCATTTGAGACGTCCTGGGATTTATTCAGAGAAAGCCTCCTCCATCTGATCTGCTCCACTGCACCATTTCTGAGCACAAGTGCCATTTTGTGGGATTTACACAGTAAATAAAGGCCCACATGATTTGTCTTCCCCTGCAGTAGAGAATGGGTGCGGAGAGAAATGATGAAGGAGAGCGTCTGCTGGATATATGGCTGGATATGAGGAGATAATCTGACATGGATTTCAGCAGCTCTTCTTGACTTTAAGTTTCTCCTTGTCCGTCAGACCCAGTGGACTCTTCATATCTGCTGCAGAGTGTTTATCTGTTTTACAAGCAGCTTTGCATCAGTGTCTCTGGCATAGAAATCAGACACACTTACAAAATTAATCTGCCGCTAGAACTTGAATTTTGTGACTAATTTGTGACATTTAACCCAATTTACATATGGAGCAGTTCAGTGTATGGttataaacaacaataaatgagTATGAATGAGATATGAAGCATGGGGTTCAAATCCAACTGTAAATtgtaatacagtatattatagtATGAAAGTACTGAATATAGACACAAGATCTCCTTCAGGCTGCAGATTTTCAACATGTACAGCTGATTGAAATGGATTAATTATTGCCCTGATCATGCAAATCAGCATTTCAACTGTTGAAGTATTTTCTTGTAACCATTTCCTGAATGTTTTGCTCATGCACTGTTCAACAACAtctgtaaatcagcagttttccacattttctgactaatatttttattttccctgtttttttctgtgtttgagttgcattatgggatcttgaccTTTTCTCTAACAACTTTCAACCTGTAAAAGTGTGTTCAAGTGTGTGTTCTGcatgtgtaatagtgtgcagtgctgtattgtgtgtgttggtgttgtacaTTACGCTACAGaagccttgtaataaactgcagcacatttactCTTATTctacacacttatttctctacatattattctctcttatacattatattattattttaaac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008375 False 573 lncRNA 0.34 2 474380 504829
TCONS_00008507 False 1449 lncRNA 0.38 5 498446 504829
TCONS_00006149 True 1067 lncRNA 0.38 2 501654 504829

Neighbor

gene id symbol gene type direction distance location
XLOC_003108 rab43 coding upstream 24281 440305 ~ 450099 (+)
XLOC_003107 CR855375.1 coding upstream 102940 371322 ~ 371440 (+)
XLOC_003106 pdrg1 coding upstream 114063 355305 ~ 360317 (+)
XLOC_003105 cyp27b1 coding upstream 134533 329687 ~ 339847 (+)
XLOC_003103 mettl1 coding upstream 152133 296437 ~ 322247 (+)
XLOC_003111 raf1b coding downstream 1636 506465 ~ 540252 (+)
XLOC_003112 NA coding downstream 38519 543348 ~ 544194 (+)
XLOC_003113 mkrn2os.1 coding downstream 70836 575665 ~ 580833 (+)
XLOC_003114 mkrn2os.2 coding downstream 78313 583142 ~ 589128 (+)
XLOC_003115 timp4.1 coding downstream 186905 691734 ~ 701305 (+)
XLOC_003250 BX324177.11 misc downstream 10840974 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 10868057 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 10881533 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 10913204 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 10924564 11429393 ~ 11429689 (+)
XLOC_003104 NA non-coding upstream 175281 298450 ~ 299099 (+)
XLOC_003101 NA non-coding upstream 307556 96979 ~ 166824 (+)
XLOC_003099 NA non-coding upstream 418654 54204 ~ 55726 (+)
XLOC_003118 FQ311892.1 non-coding downstream 225978 730807 ~ 730923 (+)
XLOC_003126 AL935272.1 non-coding downstream 1041288 1546117 ~ 1546231 (+)
XLOC_003132 NA non-coding downstream 1430855 1935684 ~ 1997410 (+)
XLOC_003133 NA non-coding downstream 1446802 1951631 ~ 1952594 (+)

Expression


Co-expression Network