LOC110488811 (LOC106604684)


Basic Information

Item Value
gene id LOC110488811
gene name LOC106604684
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 12563911 ~ 12568719 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561217.2
CTCTTTGACTCATCCACCCAAAGCAGTCCCACTCCTCGCCAGCGGGCTTGTGAACGACTCCGGAAACGACGTCACCTTTCTGTTTACATCGTAGGAGTCGCAGTTAGCTAATGCTTGTTGCATGGAATTGTATTTTTAGACATTTATGAAACTAGAAAAATAGCTGCCTCACAATTGTTTGATCGCAATGGGCGGTCATGGGGTTATGGAGAGCGAGGAATCTTTGGACTACTCCGTGCACGAGGCGTGGAACGAGGCCACCAATGTCTATTTGCTCGTCATCCTGGTTAGCTTCGGACTGCTGATGTACGCTAGAAAAAATAAGAGGAAGATCATGAGGATATTTGCTCTGCCGCCTACCGCTGGAGCCACGGCCGAACCCAACTTCTACGACAGTCTGCAGAAAGTGAGACTGCGCCAGCAGCTGGAGATGTACTCCCTTGCTAGGAAATTTGACCAGCAGCAGCACCAAGGCCAGAGTGAGAGTGTTCAGCTCTCTATGGAATGAGACCACACCAGTAAGGTAGCATGGTCCTGCATCATACCTGCCTGCTCCACCCTGTCTCTCCACCCTTAAGCCTCTTTGGCTTTGGTAAGTCTGAACATTACTACACTCCTGAAGAGGGCATGCGTATTACGGAGGAAGAAGTCGAGGGTCAAGGAAGGTTTCTGTGATTAAGACTGTCGTCAAGTCAAACGAAACTGGATGTTCCCTTttcatttctgtattttttttgcatTCATTTTGCCTTTATATAAATAAACATtgttttggtgtggatgtgtCGCCACATAGTGGGTTTAGGAGGACCACATCCAGTGTATTTGGTGAATTCTCTACAGCACCTATTCAAGTTATTGTCTTAAACTCTAAATAACATGTATTTGTACCATAAAATGATGGTACAACACACCTTTTAATCAAGCATATCTATGTAAATGTTTGGTTGTCAAGAACTGTTCTGTTGCCAAGTTTTTGATCCTCCTATATAATCCTTATAATGGCATTACAACAGACCTGGGAAAGTTTTGCTGATCCTTTGCAGCAAGGAGCGTTGTGATCCAAACGGAGAGTCGCTCTCTTTCATGTTGAGAGGGTCAAAGTTTACTTTTCCCCACTCGTTGCTGTTTCTGAAAAGGACATGCATTTATATTATTACTCTGattaaaaatcattttaaaaaacaaaacaaggaaAAA
>TU1388712
CGACTCCGGAAACGACGTCACCTTTCTGTTTACATCGTAGGAGTCGCAGTTAGCTAATGCTTGTTGCATGGAATTGTATTTTTAGACATTTATGAAACTAGAAAAATAGCTGCCTCACAATTGTTTGATCGCAATGGGCGGTCATGGGGTTATGGAGAGCGAGGAATCTTTGGACTACTCCGTGCACGAGGCGTGGAACGAGGCCACCAATGTCTATTTGCTCGTCATCCTGGTTAGCTTCGGACTGCTGATGTACGCTAGAAAAAATAAGAGGAAGATCATGAGGATATTTGCTCTGCCGCCTACCGCTGGAGCCACGGCCGAACCCAACTTCTACGACAGTCTGCAGAAAGTGAGACTGCGCCAGCAGCTGGAGATGTACTCCCTTGCTAGGAAATTTGACCAGCAGCAGCACCAAGGCCAGAGTGAGAGTGTTCAGCTCTCTATGGAATGAGACCACACCAGTAAGGTAGCATGGTCCTGCATCATACCTGCCTGCTCCACCCTGTCTCTCCACCCTTAAGCCTCTTTGGCTTTGGTAAGTCTGAACATTACTACACTCCTGAAGAGGGCATGCGTATTACGGAGGAAGAAGTCGAGGGTCAAGGAAGGTTTCTGTGATTAAGACTGTCGTCAAGTCAAACGAAACTGGATGTTCCCTTttcatttctgtattttttttgcatTCATTTTGCCTTTATATAAATAAACATtgttttggtgtggatgtgtCGCCACATAGTGGGTTTAGGAGGACCACATCCAGTGTATTTGGTGAATTCTCTACAGCACCTATTCAAGTTATTGTCTTAAACTCTAAATAACATGTATTTGTACCATAAAATGATGGTACAACACACCTTTTAATCAAGCATATCTATGTAAATGTTTGGTTGTCAAGAACTGTTCTGTTGCCAAGTTTTTGATCCTCCTATATAATCCTTATAATGGCATTACAACAGACCTGGGAAAGTTTTGCTGATCCTTTGCAGCAAGGAGCGTTGTGATCCAAACGGAGAGTCGCTCTCTTTCATGTTGAGAGGGTCAAAGTTTACTTTTCCCCACTCGTTGCTGTTTCTGAAAAGGACATGCATTTATATTATTACTCTGattaaaaatcattttaaaaaac

Function

NR:

description
small integral membrane protein 19-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561217.2 False 1200 mRNA 0.44 3 12563911 12568719
TU1388712 True 1132 TUCP 0.43 3 12563925 12568665

Neighbor

gene id symbol gene type direction distance location
LOC110488809 LOC106604685 coding downstream 287171 12258512 ~ 12276740 (-)
LOC118938696 NA coding downstream 580410 11953379 ~ 11983501 (-)
nocta LOC106604687 coding downstream 1074725 11462015 ~ 11489186 (-)
LOC110488803 LOC106604691 coding downstream 1150390 11398875 ~ 11413521 (-)
LOC118938776 NA coding downstream 1161120 11402656 ~ 11402791 (-)
LOC110488815 LOC106604681 coding upstream 19355 12588074 ~ 12669699 (-)
LOC110488813 LOC106611787 coding upstream 123247 12691966 ~ 12696606 (-)
LOC110488814 LOC106604680 coding upstream 144329 12713048 ~ 12737488 (-)
LOC110488816 LOC106604679 coding upstream 190447 12759166 ~ 12792580 (-)
LOC110488817 LOC105028880 coding upstream 252185 12820904 ~ 12828721 (-)
G1216188 NA non-coding downstream 26605 12537093 ~ 12537306 (-)
G1216064 NA non-coding downstream 47313 12516343 ~ 12516598 (-)
G1216037 NA non-coding downstream 67242 12496349 ~ 12496669 (-)
G1215989 NA non-coding downstream 104173 12459516 ~ 12459738 (-)
G1215988 NA non-coding downstream 105235 12458463 ~ 12458676 (-)
G1216203 NA non-coding upstream 2272 12570991 ~ 12571227 (-)
G1216206 NA non-coding upstream 4630 12573349 ~ 12573635 (-)
G1216218 NA non-coding upstream 35674 12604393 ~ 12604679 (-)
G1216281 NA non-coding upstream 127925 12696644 ~ 12696848 (-)
G1216290 NA non-coding upstream 132197 12700916 ~ 12701155 (-)
G1216013 NA other downstream 85444 12478019 ~ 12478467 (-)
G1215447 NA other downstream 587134 11964493 ~ 11976777 (-)
G1215349 NA other downstream 667110 11894022 ~ 11896801 (-)
G1214997 NA other downstream 988204 11574807 ~ 11575707 (-)
LOC110488801 rab33b other downstream 1170606 11390055 ~ 11393328 (-)
G1216443 NA other upstream 272777 12841496 ~ 12842753 (-)
LOC110488853 LOC106604605 other upstream 1115065 13683784 ~ 13715500 (-)
LOC110488886 LOC106604622 other upstream 1988114 14542673 ~ 14642681 (-)
G1218808 NA other upstream 2425101 14993820 ~ 14994379 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location