LOC110488816 (LOC106604679)


Basic Information

Item Value
gene id LOC110488816
gene name LOC106604679
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 12759166 ~ 12792580 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561221.2
CATGCGCAAAGTGAGGACGACCGCTTTAATATTTTATCTACAGTAGGCAATGGCTGGACAGTCTACCATCAACGGGATTACCTTATCTCCCGTAACTCGCCATCCATCTTCATAGCCGCAAAATTTTgggaaaaataacattttaatacTCAAGTGTAATTATGGACTCCGTTTCTGCACCCCCGGTTTGCCGTGCACTTGCTGTTCCATGACTGGCGGGGATTTGACACGTAGCCCCACTCAGACGCGCTGTGACAGAAACAAGCCTCCTCATCTGGGAAGACTCAACAACCCTCGCCTAGTAACGAGATTtgaagcctccccctttatcaAACTAACGGGATCGTCGGATACCAATGACTTAAAATGACACCTTAAGTTACCCTCGTATTACGCGCTGGTGTGTGCTGTCTCTGGTATTATTTTTCCTTTTCATAGTGGGAGCGAAAGAGCGGGGAAACAGGAAACTCGTCCATCTCCAAGTTTTTCGGATCTCAGGGGCGCAGTGGAGGGAGCGAGCGGCGATGGCAGCCCGGATGACAGCAGCGTTCGCTCTCCTGGTTCTCACCGTGGCAActgcctTGGGTGCGGAGATAGAGGAGCGACTGGTGACCTACCTGCTGTCTCCAGAGCGCTACAACAAACTGATTAGACCTGCTGTCAACAAGAGCCAACAGGTCACCATCCATATACAGGTGTCCCTGGCCCAGCTCATTAGTgtgAATGAGAGAGAACAGATCATGACCACCAACTGCTGGCTGACTCAGGTATGGAATGACTACAGGTTGATGTGGGACCCAGAGGAGTATGAGGGCATTAAGAAGGTCCGCCTCCCATCTCAACACATCTGGCTGCCTGACATCGTCCTCTACAACAATGCGGATGGGAACTACGAGGTCTCATTCTACTCCAACACGGTGGTCTCCAACAATGGAGAGGTGAACTGGCTGCCCCCCGCCATCTACAAGTCGGCCTGCAAGATTGAGGTCCGCGACTTCCCCTTCGACCAGCAGAACTGCACACTCAAGTTCCGATCCTGGACCTACGACCACACGGAGATCGACCTGATCCTGCTCAGTGATTTCGCCAGCCGTGACGACTTCAAGCCCAGCGGTGAGTGGGACATCGTGTCTCTGCCGGGACGGAAGAACGAAGACCCCTCTGACATCACCTACCTGGACATCACCTATGACTTCATCATCAAGCGCAAGCCACTGTTCTACACCATCAACCTCATCATTCCCTGTGTCCTCATCACCTCTCTGGCCATCCTGGTGTTCTACCTGCCCTCTGACTGTGGAGAGAAGATGACTCTCTGTATATCAGTCCTCCTGGCCCTCACTGTGTTCCTGCTGCTGATCTCCAAGATCGTCCCACCTACGTCTCTAGCTGTCCCTCTCATAGGGAAGTATCTGATGTTTGCCATGGTGCTGGTCACCTTCTCCATCGTCACCAGTGTCTGTGTGCTCAACGTGCACCATCGCACGCCCTCCACACACACCATGCCCCCCTGGGTCAAACGTCTCTTCCTGCACCGCCTCCCCTCCTTCCTGTTCATGCGTCGGCCGGCCAGCTCCAACATCCGAGAGAGGTTCCGCCAGAAACACCAGCGGCCCTCCTACTCCGACCTGAAGCTGAGAGACGGGGCAGTGGCCCCGGCCGCGGGGGGAATGGGGGTGGCAGAGGGGTCTGGGATAGGCAGGGCCGACTCCTTCTATGTGAATGAGGAGTCGGCCAAGCGGTACGGCTGGAAGATCAGCGACCTGTCGGAGAACACAGAGTTCAGAAAGAGGATGACAGTGAAGTGTCACGCAGACGTTGAGGAGGCTGTGGACGGGGTGCGCTATGTCGCCGAGAAGATGAAGAGTGAGGACAATGATgaggggGTCATCGAGGACTGGAAGTATGTTGCCATGGTGATTGACCGGCTCTTCCTGTGgatatttgtgtttgtgtgcattaCTGGGACTTTGGGGCTGTTCATGCAGCCCCTCTTCCAGAGCTACAACACACCCACGGCAGACGACCTGGAGCAGAACTGACCTATGACCTTTGACACGAAACCTGACCCTGACGCCCAAACCTGACCCTGACGCCCCCCAACACCCCCATGAGGAACAACCGCCGCGAGTAAAACAGCTACTTACCAACACCTTGAAACAGAATTGTGTTATTCTGACACACTTGCATACTGTACGCACACAGCACACCGGCCGCCACCACACCAACCAATGCCCCTCAACCTCCCCTCTTAACATGGGACAGAGCAACCCCACCAACCCTAGAAAATGGGTCTGTTGTTTTtcattttatttctgcatttagTTTGAAAAGGGGAACCAATCTTTTCTGCAGAGTTCCAGAATAATTTGCTGAGCCCAAagatccccacacacacacgacgAGCCTGACCCTGGCCAGAAGACGAGGACAGAGCCTCCAGTCTCTGCTACAGAGAAGGACAGCTCCTCCGTGTGTCCTCGTCCAGtgaagcacagacacacagacataactCTTGCCTTCAGACGAAGAGGGAGAGACGCATTTCTTTAGACAGGAATGCCAGCAGGCTTGTTATTTTGCTGTGAAACGGGAAGCCTTGACTGTCTCCCCTCACGCTACAGTGTGTTGACTGAGTACTACCCGTGCAGTATTCGGGACTGCTTCTGGCCCCAGGTGGTCAGTCACCTGATGGTCTTTCAATGCGTTAACATTAGCTTTTTTAGCCTACCGGGTTATGTGTGTAATTTTACGTTCAAAATGGTTGTTCTTATGTGTTCAAAGAGGGTGGGACCAACGGGAAGCTAGCTGTTAAGTAAATACAAAATGACCATCAAACTGTTGTCACTCACCTTTGCTTCTCTTAAAGGTACAGTACGCCGGTGTAAGAAGTGTTCATTCTCACAAGGTTTTCCAGGTAACCAGCAGCTGTACACAAACTCCATAAGCAAACCGGTCAAACTGAACAGCGTTTGGCTCTGCACTAGCAATCTTCCAGGCGGTATAAACACTGCTCAGTATTTTTTTCAGAAATCTTTAACCTAAGTCTGTGTTCAACTTCTTTATTGTGACTGTCATATATACACTCTGTCACTGCTATAAATGCTAGCCAAGGGAAGGCATACTGTACACATTTCAAGTGAAGAGTTTTGTTCTAATCTCATGTATTTCTTTTTATCAGTGTAAAGAAGGGGACATGTGTTTTTCTTCCGCTGGCCAGTTATGTGACCTGTTTTGGTTTGTCGTCCTGGACTGATGTATTCTGGGTAGCGCTCAGAATTACATGAAGTAACAATGCTGATGTCATGTCAAAGAAGTCAATAAAAGGAAACAACAACGGGA

Function

NR:

description
neuronal acetylcholine receptor subunit beta-2-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K05312 CHRNN; nicotinic acetylcholine receptor, invertebrate

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561221.2 True 3342 mRNA 0.51 5 12759166 12792580

Neighbor

gene id symbol gene type direction distance location
LOC110488814 LOC106604680 coding downstream 21678 12713048 ~ 12737488 (-)
LOC110488813 LOC106611787 coding downstream 62560 12691966 ~ 12696606 (-)
LOC110488815 LOC106604681 coding downstream 89467 12588074 ~ 12669699 (-)
LOC110488811 LOC106604684 coding downstream 190447 12563911 ~ 12568719 (-)
LOC110488809 LOC106604685 coding downstream 482426 12258512 ~ 12276740 (-)
LOC110488817 LOC105028880 coding upstream 28324 12820904 ~ 12828721 (-)
LOC110488818 tri65 coding upstream 50551 12843131 ~ 12844679 (-)
ankrd13d LOC106604675 coding upstream 68199 12860779 ~ 12870657 (-)
kdm2ab LOC106604673 coding upstream 78217 12870797 ~ 12882582 (-)
stx3a LOC106604672 coding upstream 96132 12888712 ~ 12906848 (-)
G1216386 NA non-coding downstream 12496 12746320 ~ 12746670 (-)
G1216371 NA non-coding downstream 30490 12728290 ~ 12728676 (-)
G1216301 NA non-coding downstream 47233 12711677 ~ 12711933 (-)
G1216290 NA non-coding downstream 58011 12700916 ~ 12701155 (-)
G1216281 NA non-coding downstream 62318 12696644 ~ 12696848 (-)
G1216408 NA non-coding upstream 2878 12795458 ~ 12795782 (-)
G1216425 NA non-coding upstream 38792 12831372 ~ 12831593 (-)
G1216426 NA non-coding upstream 39091 12831671 ~ 12831960 (-)
G1216446 NA non-coding upstream 54022 12846602 ~ 12846814 (-)
G1216447 NA non-coding upstream 54477 12847057 ~ 12847292 (-)
G1216013 NA other downstream 280699 12478019 ~ 12478467 (-)
G1215447 NA other downstream 782389 11964493 ~ 11976777 (-)
G1215349 NA other downstream 862365 11894022 ~ 11896801 (-)
G1214997 NA other downstream 1183459 11574807 ~ 11575707 (-)
G1216443 NA other upstream 48916 12841496 ~ 12842753 (-)
LOC110488853 LOC106604605 other upstream 891204 13683784 ~ 13715500 (-)
LOC110488886 LOC106604622 other upstream 1764253 14542673 ~ 14642681 (-)
G1218808 NA other upstream 2201240 14993820 ~ 14994379 (-)

Expression


Co-expression Network