LOC110488817 (LOC105028880)


Basic Information

Item Value
gene id LOC110488817
gene name LOC105028880
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 12820904 ~ 12828721 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561223.2
TCGATTAGATCGGTCTGACCAGAGATCTGAAAATCCCAATGATTGATCTCCATTTACGCTCCCCACTGACATCTCCAGAGAAAACACCACTAGCTTCAGCCGTGAATGTACATTTCGTGGTGGGGATTTAAATCGTATGAAGAACAACATTATTTGAAGATCAGGCAAGGCATTCGACCGCGCCTATCTCGGATCAACCAACATCGTCTAAAAAGGGATACAAATAAAGACGTTTTTGGAGTGTTGACTGACAGTGACGCGCAACACCGGCAGAGGGGGGAGCTGGCAGGAAATACCCATCGCTGCTGATGGTGTACGAACGACAGTAGAGGACTACTCGTAGTACACCCGCCGCTTTCCGTTTTACCTTCGCCCCAAACCAAGCGGTTCATGCGAAGGAAGATACTCTCTAGAACAGGCCGATTAGGAAGATAGCAAGGAGTGGCGGCCAGGCGAGAGGGAGGCTACGGCAAACCATCTCTCCCAGATATACCTCCATTACGCCCACCTACCACCGCCTCCTTCAGCCATGGATCCGCCGAGGACTCGGTCACGTTCAGGTTTCTTTCATTATGGCATGAACGGTGGTGGCAACGGCAATAACACAATCAACAATGGGAACATGATGAATGCCAGCGGAGGGATCGGGGTGAATTACCCTCAACAGAACAACCCCGGCTGGGTTCCGCACGGAGCGCGCGGTAGCTATTCGGAGAACCAGCACACCCAGGGGAACTACCTGACCGGTGGGGCGCAACGCCACCCTTCCCACGGAGCACACAGACACCCCGGCACCGGTGTCCTGCACTTCCACCCTGATAACATCTGCAGTGATGAGCGGGACAAGATGGAGGACAGTCCTAGCCCAAAGCGACAGCGTCTTTCCCAGCAGTCTATGTTAGATCTGAGCtctgcccctccctccaccccatcctctcccATTCGTCCCTGGGAGCTACCCCACACCCCCACTACCTGGGCCACACCCCCACCCAGTCGCAGGCCACACCCCCACTACCTGCCAGAGCGATGCCACACTCCTGTTCGCAACCGCCGcagtcctccAATGAGACGCCAGCGTGGCCGCCGTGACCGTCTCACCTCCCACCCTCATCACAACTCTcacccccaacaacaacaacaacatcatcatcaccactaccaccaccatcaccacaacccGCACCATCATCATTCTCACCCCCACCACGGCCTCTCAGCAGGGCCTCAGGATGAGAACTACCGCCACCCCGTCCCCCCTCAGAGTTACCCCTACAACCAGCAACCCCCCCGGGGGCCAGAGGAGCGCCCCTACCACCCCCCCAACCTATCCCCACgccccctccaccaccctcctaaCCTGTCCCCCAGGCTGATGCACCCTGCCGCCCACCCCCAGCACCCCCCTCAGCAGCAGAGCAGTGTGGTGCTGGACCTTCATGACCAGGGTTCTTCTCAGGTGTCGTACCCGGTCTCTCCCCCTGGTGCAccccctggcctgtctccccgcTCTGCCCCCCCGCAGCTCCCAGCATGCTCGGTGGTCTTCAGTGGACAACACTACCCTGTCTGCAGTGTTCCTCCATCGGTTCTGCAGACATGCTCTGTGCAGCACCTGCCCATGCCCTACCCATTCCCCTCCCTGCTGTCCAGTGACCCCACCTTTCTCCTgccccctccccacctcccccacCATCCCCCTCACCTCCCCCACCATCCCCCTCACCTCCCCCAGCCTGGACAGTTTGGACCCTACCCCACACAGCAGGCCAGATCGccGTTACAGAGGATAGAGAATGacgtggagctgttgggggaacACTTGTCCTTAGGGGCGGGTCTCCACTACCCCCCCGCAGCCCACCCCGGCCTGCCCCCCCACTCCACACAGCTCCACTTCCTTTCCCATGATCCACTGCCACAGGAGTTCTTTGGTGTGTCGTATCCCAGCTTCATGCCACGACGTATCCCAGGACGACGCTACCGCTCCCAGCAGCCACTGCCACCCTCGCCTTACCACCCCAGTTTCCTGCCTTACTTCCTctCCATGCTGCCAGTCCAGCCAACAGGCCCTGCCATCAGCCTGGAGCTGGACGTAGATGACGGAGAGGTGGAGAACTATGAGGCCCTTCTCAACCTGGCTGAGCGTCTTGGAGAGGCCAAACTCAGAGGACTGACCAAGGGAGACATTGAACAGCTGCCTTCCTATAGGTTCAACCCCAACAACCACCAATCAGAACAGACGCTgtgtgtggtgtgtatgagtGACTTTGAGTCTCGTCAGCTGCTGCGGGTTCTACCCTGCAGTCATGAGTTCCATGGAAAGTGTGTGGACAAGTGGCTCAGGgctaACAGGACGTGTCCCATCTGTAGGGCTGATGCCTCCGAGGTCCAGCGAGACTCAGAGTGACCAGCAGGGGGGGACAACCACGCTGACAGTTGTAGCActgccctccatctctcctttagcGCTCTTGCCCTTCTGTCCTCTCTTTATACTCCATTCCCACTGGTCCAGCACACACCCATTGCATCTCTCtagctctgaatgtccttcagctGGTGTGTGCGCAGGAACGTGTCTATCTGTATGATTCCTGGCGTTGGTATGTACCTgcgttgagtgtgtgtgtgtatgatactGTATTTTAGTGCTTCTGatcgtgtgtgtgtttagatTTGGGTGTCCACACGTACCTCTCCATGTAGTTGACACGTAAAAGGTCCATGCCACTGTGCTGCCTCTCTGTAGAACTTCCCGTTTGTTTTTGTTTAGTTTCTCTGCCTGGCTGTTTACCTCGTCATTCCTGTTGCTCATTGTTACCACGACAACATGCTTCACTGTATTCCTCTGAAGTTTCTCTTATTCTATTTCTCTTTATTTTTGTTCCTTATTAAATATGATCAGTTTGTCTGACTGCAGTGgcacatatatatactgtataaatatatgaATATCTGTATACCAAATAAAAGGCTTGATATTAACTTTTTAAAAATCACATTTTGTACAggttcttttttttgtttttttgtattatGAGCTGTGGTGCAGTTAGCTTTGATTGTGCTCAATTGATTTGTGTTCTGGATGTGTTAGACTTTAGGTGGTGGTTCGTTAATAAAAGACATTATGCACACTTA
>XM_021561224.2
CTCGATTAGATCGGTCTGACCAGAGATCTGAAAATCCCAATGATTGATCTCCATTTACGCTCCCCACTGACATCTCCAGAGAAAACACCACTAGCTTCAGCCGTGAATGTACATTTCGTGGTGGGGATTTAAATCGTATGAAGAACAACATTATTTGAAGATCAGGCAAGGCATTCGACCGCGCCTATCTCGGATCAACCAACATCGTCTAAAAAGGTGTCCTGCACTTCCACCCTGATAACATCTGCAGTGATGAGCGGGACAAGATGGAGGACAGTCCTAGCCCAAAGCGACAGCGTCTTTCCCAGCAGTCTATGTTAGATCTGAGCtctgcccctccctccaccccatcctctcccATTCGTCCCTGGGAGCTACCCCACACCCCCACTACCTGGGCCACACCCCCACCCAGTCGCAGGCCACACCCCCACTACCTGCCAGAGCGATGCCACACTCCTGTTCGCAACCGCCGcagtcctccAATGAGACGCCAGCGTGGCCGCCGTGACCGTCTCACCTCCCACCCTCATCACAACTCTcacccccaacaacaacaacaacatcatcatcaccactaccaccaccatcaccacaacccGCACCATCATCATTCTCACCCCCACCACGGCCTCTCAGCAGGGCCTCAGGATGAGAACTACCGCCACCCCGTCCCCCCTCAGAGTTACCCCTACAACCAGCAACCCCCCCGGGGGCCAGAGGAGCGCCCCTACCACCCCCCCAACCTATCCCCACgccccctccaccaccctcctaaCCTGTCCCCCAGGCTGATGCACCCTGCCGCCCACCCCCAGCACCCCCCTCAGCAGCAGAGCAGTGTGGTGCTGGACCTTCATGACCAGGGTTCTTCTCAGGTGTCGTACCCGGTCTCTCCCCCTGGTGCAccccctggcctgtctccccgcTCTGCCCCCCCGCAGCTCCCAGCATGCTCGGTGGTCTTCAGTGGACAACACTACCCTGTCTGCAGTGTTCCTCCATCGGTTCTGCAGACATGCTCTGTGCAGCACCTGCCCATGCCCTACCCATTCCCCTCCCTGCTGTCCAGTGACCCCACCTTTCTCCTgccccctccccacctcccccacCATCCCCCTCACCTCCCCCACCATCCCCCTCACCTCCCCCAGCCTGGACAGTTTGGACCCTACCCCACACAGCAGGCCAGATCGccGTTACAGAGGATAGAGAATGacgtggagctgttgggggaacACTTGTCCTTAGGGGCGGGTCTCCACTACCCCCCCGCAGCCCACCCCGGCCTGCCCCCCCACTCCACACAGCTCCACTTCCTTTCCCATGATCCACTGCCACAGGAGTTCTTTGGTGTGTCGTATCCCAGCTTCATGCCACGACGTATCCCAGGACGACGCTACCGCTCCCAGCAGCCACTGCCACCCTCGCCTTACCACCCCAGTTTCCTGCCTTACTTCCTctCCATGCTGCCAGTCCAGCCAACAGGCCCTGCCATCAGCCTGGAGCTGGACGTAGATGACGGAGAGGTGGAGAACTATGAGGCCCTTCTCAACCTGGCTGAGCGTCTTGGAGAGGCCAAACTCAGAGGACTGACCAAGGGAGACATTGAACAGCTGCCTTCCTATAGGTTCAACCCCAACAACCACCAATCAGAACAGACGCTgtgtgtggtgtgtatgagtGACTTTGAGTCTCGTCAGCTGCTGCGGGTTCTACCCTGCAGTCATGAGTTCCATGGAAAGTGTGTGGACAAGTGGCTCAGGgctaACAGGACGTGTCCCATCTGTAGGGCTGATGCCTCCGAGGTCCAGCGAGACTCAGAGTGACCAGCAGGGGGGGACAACCACGCTGACAGTTGTAGCActgccctccatctctcctttagcGCTCTTGCCCTTCTGTCCTCTCTTTATACTCCATTCCCACTGGTCCAGCACACACCCATTGCATCTCTCtagctctgaatgtccttcagctGGTGTGTGCGCAGGAACGTGTCTATCTGTATGATTCCTGGCGTTGGTATGTACCTgcgttgagtgtgtgtgtgtatgatactGTATTTTAGTGCTTCTGatcgtgtgtgtgtttagatTTGGGTGTCCACACGTACCTCTCCATGTAGTTGACACGTAAAAGGTCCATGCCACTGTGCTGCCTCTCTGTAGAACTTCCCGTTTGTTTTTGTTTAGTTTCTCTGCCTGGCTGTTTACCTCGTCATTCCTGTTGCTCATTGTTACCACGACAACATGCTTCACTGTATTCCTCTGAAGTTTCTCTTATTCTATTTCTCTTTATTTTTGTTCCTTATTAAATATGATCAGTTTGTCTGACTGCAGTGgcacatatatatactgtataaatatatgaATATCTGTATACCAAATAAAAGGCTTGATATTAACTTTTTAAAAATCACATTTTGTACAggttcttttttttgtttttttgtattatGAGCTGTGGTGCAGTTAGCTTTGATTGTGCTCAATTGATTTGTGTTCTGGATGTGTTAGACTTTAGGTGGTGGTTCGTTAATAAAAGACATTATGCACACTTA
>XM_021561225.2
ACTCGATTAGATCGGTCTGACCAGAGATCTGAAAATCCCAATGATTGATCTCCATTTACGCTCCCCACTGACATCTCCAGAGAAAACACCACTAGCTTCAGCCGTGAATGTACATTTCGTGGTGGGGATTTAAATCGTATGAAGAACAACATTATTTGAAGATCAGGCAAGGCATTCGACCGCGCCTATCTCGGATCAACCAACATCGTCTAAAAAGGGATACAAATAAAGACGTTTTTGGAGTGTTGACTGACAGTGACGCGCAACACCGGCAGAGGGGGGAGCTGGCAGGAAATACCCATCGCTGCTGATGGTGTACGAACGACAGTAGAGGACTACTCGTAGTACACCCGCCGCTTTCCGTTTTACCTTCGCCCCAAACCAAGCGGTTCATGCGAAGGAAGATACTCTCTAGAACAGGCCGATTAGGAAGATAGCAAGGAGTGGCGGCCAGGCGAGAGGGAGGCTACGGCAAACCATCTCTCCCAGATATACCTCCATTACGCCCACCTACCACCGCCTCCTTCAGCCATGGATCCGCCGAGGACTCGGTCACGTTCAGGTTTCTTTCATTATGGCATGAACGGTGGTGGCAACGGCAATAACACAATCAACAATGGGAACATGATGAATGCCAGCGGAGGGATCGGGGTGAATTACCCTCAACAGAACAACCCCGGCTGGGTTCCGCACGGAGCGCGCGGTAGCTATTCGGAGAACCAGCACACCCAGGGGAACTACCTGACCGGTGGGGCGCAACGCCACCCTTCCCACGGAGCACACAGACACCCCGGCACCGATGGAGGACAGTCCTAGCCCAAAGCGACAGCGTCTTTCCCAGCAGTCTATGTTAGATCTGAGCtctgcccctccctccaccccatcctctcccATTCGTCCCTGGGAGCTACCCCACACCCCCACTACCTGGGCCACACCCCCACCCAGTCGCAGGCCACACCCCCACTACCTGCCAGAGCGATGCCACACTCCTGTTCGCAACCGCCGcagtcctccAATGAGACGCCAGCGTGGCCGCCGTGACCGTCTCACCTCCCACCCTCATCACAACTCTcacccccaacaacaacaacaacatcatcatcaccactaccaccaccatcaccacaacccGCACCATCATCATTCTCACCCCCACCACGGCCTCTCAGCAGGGCCTCAGGATGAGAACTACCGCCACCCCGTCCCCCCTCAGAGTTACCCCTACAACCAGCAACCCCCCCGGGGGCCAGAGGAGCGCCCCTACCACCCCCCCAACCTATCCCCACgccccctccaccaccctcctaaCCTGTCCCCCAGGCTGATGCACCCTGCCGCCCACCCCCAGCACCCCCCTCAGCAGCAGAGCAGTGTGGTGCTGGACCTTCATGACCAGGGTTCTTCTCAGGTGTCGTACCCGGTCTCTCCCCCTGGTGCAccccctggcctgtctccccgcTCTGCCCCCCCGCAGCTCCCAGCATGCTCGGTGGTCTTCAGTGGACAACACTACCCTGTCTGCAGTGTTCCTCCATCGGTTCTGCAGACATGCTCTGTGCAGCACCTGCCCATGCCCTACCCATTCCCCTCCCTGCTGTCCAGTGACCCCACCTTTCTCCTgccccctccccacctcccccacCATCCCCCTCACCTCCCCCACCATCCCCCTCACCTCCCCCAGCCTGGACAGTTTGGACCCTACCCCACACAGCAGGCCAGATCGccGTTACAGAGGATAGAGAATGacgtggagctgttgggggaacACTTGTCCTTAGGGGCGGGTCTCCACTACCCCCCCGCAGCCCACCCCGGCCTGCCCCCCCACTCCACACAGCTCCACTTCCTTTCCCATGATCCACTGCCACAGGAGTTCTTTGGTGTGTCGTATCCCAGCTTCATGCCACGACGTATCCCAGGACGACGCTACCGCTCCCAGCAGCCACTGCCACCCTCGCCTTACCACCCCAGTTTCCTGCCTTACTTCCTctCCATGCTGCCAGTCCAGCCAACAGGCCCTGCCATCAGCCTGGAGCTGGACGTAGATGACGGAGAGGTGGAGAACTATGAGGCCCTTCTCAACCTGGCTGAGCGTCTTGGAGAGGCCAAACTCAGAGGACTGACCAAGGGAGACATTGAACAGCTGCCTTCCTATAGGTTCAACCCCAACAACCACCAATCAGAACAGACGCTgtgtgtggtgtgtatgagtGACTTTGAGTCTCGTCAGCTGCTGCGGGTTCTACCCTGCAGTCATGAGTTCCATGGAAAGTGTGTGGACAAGTGGCTCAGGgctaACAGGACGTGTCCCATCTGTAGGGCTGATGCCTCCGAGGTCCAGCGAGACTCAGAGTGACCAGCAGGGGGGGACAACCACGCTGACAGTTGTAGCActgccctccatctctcctttagcGCTCTTGCCCTTCTGTCCTCTCTTTATACTCCATTCCCACTGGTCCAGCACACACCCATTGCATCTCTCtagctctgaatgtccttcagctGGTGTGTGCGCAGGAACGTGTCTATCTGTATGATTCCTGGCGTTGGTATGTACCTgcgttgagtgtgtgtgtgtatgatactGTATTTTAGTGCTTCTGatcgtgtgtgtgtttagatTTGGGTGTCCACACGTACCTCTCCATGTAGTTGACACGTAAAAGGTCCATGCCACTGTGCTGCCTCTCTGTAGAACTTCCCGTTTGTTTTTGTTTAGTTTCTCTGCCTGGCTGTTTACCTCGTCATTCCTGTTGCTCATTGTTACCACGACAACATGCTTCACTGTATTCCTCTGAAGTTTCTCTTATTCTATTTCTCTTTATTTTTGTTCCTTATTAAATATGATCAGTTTGTCTGACTGCAGTGgcacatatatatactgtataaatatatgaATATCTGTATACCAAATAAAAGGCTTGATATTAACTTTTTAAAAATCACATTTTGTACAggttcttttttttgtttttttgtattatGAGCTGTGGTGCAGTTAGCTTTGATTGTGCTCAATTGATTTGTGTTCTGGATGTGTTAGACTTTAGGTGGTGGTTCGTTAATAAAAGACATTATGCACACTTA
>TU1388924
GACATCTCCAGAGAAAACACCACTAGCTTCAGCCGTGAATGTACATTTCGTGGTGGGGATTTAAATCGTATGAAGAACAACATTATTTGAAGATCAGGCAAGGCATTCGACCGCGCCTATCTCGGATCAACCAACATCGTCTAAAAAGGTGTCCTGCACTTCCACCCTGATAACATCTGCAGTGATGAGCGGGACAAGATGGAGGACAGTCCTAGCCCAAAGCGACAGCGTCTTTCCCAGCAGTCTATGTTAGATCTGAGCtctgcccctccctccaccccatcctctcccATTCGTCCCTGGGAGCTACCCCACACCCCCACTACCTGGGCCACACCCCCACCCAGTCGCAGGCCACACCCCCACTACCTGCCAGAGCGATGCCACACTCCTGTTCGCAACCGCCGcagtcctccAATGAGACGCCAGCGTGGCCGCCGTGACCGTCTCACCTCCCACCCTCATCACAACTCTcacccccaacaacaacaacaacatcatcatcaccactaccaccaccatcaccacaacccGCACCATCATCATTCTCACCCCCACCACGGCCTCTCAGCAGGGCCTCAGGATGAGAACTACCGCCACCCCGTCCCCCCTCAGAGTTACCCCTACAACCAGCAACCCCCCCGGGGGCCAGAGGAGCGCCCCTACCACCCCCCCAACCTATCCCCACgccccctccaccaccctcctaaCCTGTCCCCCAGGCTGATGCACCCTGCCGCCCACCCCCAGCACCCCCCTCAGCAGCAGAGCAGTGTGGTGCTGGACCTTCATGACCAGGTCAGTGGGGCAACAAGAAGCCATATTGTTTCTATAGTTGCCAATCAAACATTATTGAATGTGATTAGAGGCATCTTTATCCTTCT

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RNF38

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561223.2 False 3144 mRNA 0.55 12 12820904 12828719
XM_021561224.2 False 2563 mRNA 0.54 11 12820904 12828720
XM_021561225.2 False 3096 mRNA 0.55 11 12820904 12828721
TU1388924 True 884 TUCP 0.57 4 12823646 12828652

Neighbor

gene id symbol gene type direction distance location
LOC110488816 LOC106604679 coding downstream 28324 12759166 ~ 12792580 (-)
LOC110488814 LOC106604680 coding downstream 83416 12713048 ~ 12737488 (-)
LOC110488813 LOC106611787 coding downstream 124298 12691966 ~ 12696606 (-)
LOC110488815 LOC106604681 coding downstream 151205 12588074 ~ 12669699 (-)
LOC110488811 LOC106604684 coding downstream 252185 12563911 ~ 12568719 (-)
LOC110488818 tri65 coding upstream 14410 12843131 ~ 12844679 (-)
ankrd13d LOC106604675 coding upstream 32058 12860779 ~ 12870657 (-)
kdm2ab LOC106604673 coding upstream 42076 12870797 ~ 12882582 (-)
stx3a LOC106604672 coding upstream 59991 12888712 ~ 12906848 (-)
ran ran1 coding upstream 90475 12919196 ~ 12923820 (-)
G1216408 NA non-coding downstream 25122 12795458 ~ 12795782 (-)
G1216386 NA non-coding downstream 74234 12746320 ~ 12746670 (-)
G1216371 NA non-coding downstream 92228 12728290 ~ 12728676 (-)
G1216301 NA non-coding downstream 108971 12711677 ~ 12711933 (-)
G1216290 NA non-coding downstream 119749 12700916 ~ 12701155 (-)
G1216425 NA non-coding upstream 2651 12831372 ~ 12831593 (-)
G1216426 NA non-coding upstream 2950 12831671 ~ 12831960 (-)
G1216446 NA non-coding upstream 17881 12846602 ~ 12846814 (-)
G1216447 NA non-coding upstream 18336 12847057 ~ 12847292 (-)
G1216741 NA non-coding upstream 41989 12870710 ~ 12906753 (-)
G1216013 NA other downstream 342437 12478019 ~ 12478467 (-)
G1215447 NA other downstream 844127 11964493 ~ 11976777 (-)
G1215349 NA other downstream 924103 11894022 ~ 11896801 (-)
G1214997 NA other downstream 1245197 11574807 ~ 11575707 (-)
G1216443 NA other upstream 12775 12841496 ~ 12842753 (-)
LOC110488853 LOC106604605 other upstream 855063 13683784 ~ 13715500 (-)
LOC110488886 LOC106604622 other upstream 1728112 14542673 ~ 14642681 (-)
G1218808 NA other upstream 2165099 14993820 ~ 14994379 (-)
G1219208 NA other upstream 2489072 15317793 ~ 15318160 (-)

Expression


Co-expression Network