LOC110488824 (LOC105932619)


Basic Information

Item Value
gene id LOC110488824
gene name LOC105932619
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 12923946 ~ 12927257 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561244.2
tacattcatttccaatgaaaagctgcgtttgccttgcagcattgcgttgcagaggcagttgcagtgcatatgttggatttatcgaacgtaTGCGTCAAACTGTATAAGTAGACAGcttgaaggtgaatgttgaactttcgTTGCATACATAACCAGATGATGCTGCATAATATTTCGCGTAAAACAATGTCTGTGTGATCGAGTTGTGACTGCTGCCCCTCGAGTCTGCACAGCCCAGGCACGTTGTCGGAGCAGGATGTGCTCACTGGAGGTCAAATAGAAGGGGGTTTTCCTGCTGCTGGACATTTGCGGTCAGAATCCAATATTTTGGTCTATTTGactcatttatttttcaacaaatgcactttctctctctctttcactctctctctctctctctctctctccagtttctTCTTTCTGTGATGTCTACTGCATTGTGTTTGCTTTACTGCTCCAGGCCAGTCAACAGCCCTGCCTTGGTTTCGACACTTCAGCCGCAGTGTAAGGGAGAGGGATGTACAGCCATTACCATTGAGGCTGAGACACGTGCAGACGGCAGCAGGAGGACCACTCGCTACGACATCGACATGACCAAGTGCATCTACTGTGGCTTCTGCCAGGAGGCCTGTCCTGTTGATACTATTGTGGAGGGTCCAAACTTTGAGTTTGCCACAGAGACCTACGAGGAGTTGCTGTACAACAAAGAGAAGCTACTGAACAATGGAGATCAGTGGGAGTTGGAGATTGCTGCCAACATACAGGCAGACTACCTCTATAGATAGACCATCGTACTGGAAAACCAACCTAACTACATATACTATGCATACCGTAAACACTAAGACAATCTAATGTCAATGAATAATACACAAACAAAGCCTTCGATCATACTTTTAACATGGAGAGCCAGTAGGCCTATtgtcagagggaaaaaaaacacaagTGTGAAAGTGCACACACAAATTGTACATTAATCATTATTTGATGACCGTATGTATACCTCATGCACATTTTGTCATTAACAAAATCTTTAAAATATTATAACTGTAGATGAAATTGTAGGTTATGTATTTGTATGaagaaaatacatgttttttgaCGGCCTCTTTTTGTGTATCTTTTCATCCACTTTTGGAAGAAGTTTAAAAGGGATATCTTggcactgtagatactgtagcttGATTTGcactaatgaaaaatgtatcaacccctacaaaaatatccattaattataa
>XM_021561246.2
tacattcatttccaatgaaaagctgcgtttgccttgcagcattgcgttgcagaggcagttgcagtgcatatgttggatttatcgaacgtaTGCGTCAAACTGTATAAGTAGACAGcttgaaggtgaatgttgaactttcgTTGCATACATAACCAGATGATGCTGCATAATATTTCGCGTAAAACAATGTCTGTGTGATCGAGTTGTGACTGCTGCCCCTCGAGTCTGCACAGCCCAGGCACGTTGTCGGAGCAGtttctTCTTTCTGTGATGTCTACTGCATTGTGTTTGCTTTACTGCTCCAGGCCAGTCAACAGCCCTGCCTTGGTTTCGACACTTCAGCCGCAGTGTAAGGGAGAGGGATGTACAGCCATTACCATTGAGGCTGAGACACGTGCAGACGGCAGCAGGAGGACCACTCGCTACGACATCGACATGACCAAGTGCATCTACTGTGGCTTCTGCCAGGAGGCCTGTCCTGTTGATACTATTGTGGAGGGTCCAAACTTTGAGTTTGCCACAGAGACCTACGAGGAGTTGCTGTACAACAAAGAGAAGCTACTGAACAATGGAGATCAGTGGGAGTTGGAGATTGCTGCCAACATACAGGCAGACTACCTCTATAGATAGACCATCGTACTGGAAAACCAACCTAACTACATATACTATGCATACCGTAAACACTAAGACAATCTAATGTCAATGAATAATACACAAACAAAGCCTTCGATCATACTTTTAACATGGAGAGCCAGTAGGCCTATtgtcagagggaaaaaaaacacaagTGTGAAAGTGCACACACAAATTGTACATTAATCATTATTTGATGACCGTATGTATACCTCATGCACATTTTGTCATTAACAAAATCTTTAAAATATTATAACTGTAGATGAAATTGTAGGTTATGTATTTGTATGaagaaaatacatgttttttgaCGGCCTCTTTTTGTGTATCTTTTCATCCACTTTTGGAAGAAGTTTAAAAGGGATATCTTggcactgtagatactgtagcttGATTTGcactaatgaaaaatgtatcaacccctacaaaaatatccattaattataa
>XR_005035929.1
tacattcatttccaatgaaaagctgcgtttgccttgcagcattgcgttgcagaggcagttgcagtgcatatgttggatttatcgaacgtaTGCGTCAAACTGTATAAGTAGACAGcttgaaggtgaatgttgaactttcgTTGCATACATAACCAGATGATGCTGCATAATATTTCGCGTAAAACAATGTCTGTGTGATCGAGTTGTGACTGCTGCCCCTCGAGTCTGCACAGCCCAGGCACGTTGTCGGAGCAGGATGTGCTCACTGGAGGTCAAATAGAAGGGGGTTTTCCTGCTGCTGGACATTTGCGGTCAGAATCCAATATTTTGGTCTATTTGactcatttatttttcaacaaatgcactttctctctctctttcactctctctctctctctctctctctccagtttctTCTTTCTGTGATGTCTACTGCATTGTGTTTGCTTTACTGCTCCAGGCCAGGTAACACCAGACACCTCTAAATCTAATTGCCCTGAAGCTTCCAATGTTAGTGAATTGTGGACTTGCATTGCATCCTTATGACAGTCTGCCTTAATTTGGGGGTGATGGATACCTGTGTCACTGTCCTCTCTGTGCCTTTGGAGTCAACAGCCCTGCCTTGGTTTCGACACTTCAGCCGCAGTGTAAGGGAGAGGGATGTACAGCCATTACCATTGAGGCTGAGACACGTGCAGACGGCAGCAGGAGGACCACTCGCTACGACATCGAC

Function

NR:

description
NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial-like isoform X2

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561244.2 False 1235 mRNA 0.42 5 12923946 12927257
XM_021561246.2 False 1080 mRNA 0.41 5 12923946 12927257
XR_005035929.1 True 733 mRNA 0.47 3 12925151 12927257

Neighbor

gene id symbol gene type direction distance location
ran ran1 coding downstream 126 12919196 ~ 12923820 (-)
stx3a LOC106604672 coding downstream 17098 12888712 ~ 12906848 (-)
kdm2ab LOC106604673 coding downstream 41364 12870797 ~ 12882582 (-)
ankrd13d LOC106604675 coding downstream 53289 12860779 ~ 12870657 (-)
LOC110488818 tri65 coding downstream 79267 12843131 ~ 12844679 (-)
rad9a rad9a coding upstream 27103 12954360 ~ 12960532 (-)
p2rx3a LOC106604801 coding upstream 41541 12968798 ~ 12981689 (-)
ssrp1a LOC106604666 coding upstream 61007 12988264 ~ 13011711 (-)
med19a LOC106604664 coding upstream 184084 13107379 ~ 13114497 (-)
si:dkey-6i22.5 pmf1 coding upstream 187385 13114642 ~ 13116418 (-)
G1216765 NA non-coding downstream 10081 12913264 ~ 12913865 (-)
G1216761 NA non-coding downstream 15937 12907774 ~ 12908009 (-)
G1216741 NA non-coding downstream 17193 12870710 ~ 12906753 (-)
G1216447 NA non-coding downstream 76654 12847057 ~ 12847292 (-)
G1216446 NA non-coding downstream 77132 12846602 ~ 12846814 (-)
G1216776 NA non-coding upstream 5392 12932649 ~ 12932918 (-)
G1216780 NA non-coding upstream 7842 12935099 ~ 12935609 (-)
G1216787 NA non-coding upstream 22717 12949974 ~ 12951236 (-)
G1216788 NA non-coding upstream 33843 12961100 ~ 12961452 (-)
G1216791 LOC106604669 non-coding upstream 39383 12966640 ~ 12967986 (-)
G1216443 NA other downstream 81193 12841496 ~ 12842753 (-)
LOC110488817 LOC105028880 other downstream 95294 12820904 ~ 12828721 (-)
LOC110488811 LOC106604684 other downstream 355281 12563911 ~ 12568719 (-)
G1216013 NA other downstream 445479 12478019 ~ 12478467 (-)
G1215447 NA other downstream 947169 11964493 ~ 11976777 (-)
LOC110488853 LOC106604605 other upstream 756527 13683784 ~ 13715500 (-)
LOC110488886 LOC106604622 other upstream 1629576 14542673 ~ 14642681 (-)
G1218808 NA other upstream 2066563 14993820 ~ 14994379 (-)
G1219208 NA other upstream 2390536 15317793 ~ 15318160 (-)
asb5a LOC101464329 other upstream 4471084 17395671 ~ 17399280 (-)

Expression


Co-expression Network