LOC110488837 (LOC106604660)


Basic Information

Item Value
gene id LOC110488837
gene name LOC106604660
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 13168814 ~ 13174417 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561258.2
actcactcagtctcacCGACTCCGTTACCAGAGCTGAACTTCAGCGGAGATAGCAGGCACTTTCTCAGCGCTCAGGCTAACTCGCTGTCGGCTTTGGTTCGAGATGGAAACTCTCTCGACTGCACGGAGGTCTTGGAGCTCCAACATCCACAACTTCAAAAgTGGGCTCACCCTATGGCTGGTGTGGTTGGTGGCGGTGAAGCCGAGTGGGGCGGGGACTTGtccaaggctgtgtgtgtgttacccgtCACCCATGACGGTAAGCTGCCAGTCTCAGAACTTCACCACCGTGCCTTCCGGAGTTCCCTATGACTCCCAGCGCGTCTTTCTGCAGAACAACCGCATCACCGAGCTCAGAGCAGATTCTTTTGGCTTCGAGACACAGGTTCTCTGGCTCTACTCCAATAACATCACATTGATTGAGGCTGGAGCCTTCAGCAACCTGAGGGTTCTAGAAGAGCTGGACCTTGGTGACAACCCATCGCTACGGCGACTGGAGGGTGGAGCGTTCCGGGGACTGGAGAAGCTGCAGAGCCTGCACATGCATCGCTGCAAGCTGGCCGCTCTCCCCCACGACCTCTTCCTCAAGCTCTACAGCCTGCAGTTCCTCTACCTGCAGGAGAACCAGCTGCACTTCATCCAGGACGACCTCTTCTCCGACCTGGTCAACCTGAACCACCTCTTCCTGCACGGCAACCGCATCCGCACGCTGTCCGAGAACGCGTTCCACGGCCTGGTTAACCTGGACCGCCTCCTGCTCCACGACAACCGAATCCGGCAGGTGAACCGCCGTGCTTTCCGCGACCTGGGCCGTCTGACCATCCTCTACCTGTTCAACAACTCCCTGGCAGAGCTTCCGGGCCAGGCCATGAAAGATGCTGTGGCAGTCCAGTTCCTCCGCCTCAATGGGAACCCCTGGTCCTGCGGCTGTGAGGCCCGCCCCCTGTGGGAGTGGTTCCGTACAGCTCGCATCTCCTCCTCCGAGCTGATGTGCACTTCCCCCTCCCCCCGCCGCGGACAGGACCTGCGCTTCCTTCGAGAGATGGACTTTGCCCTCTGCCCCCTCCCCGACCCTGGGTCACTGGCCGGCACCACCACGACCACCTTCAGCACCAAGACAAGATGGTGGTTCTCCAAGCACAAGCCTGTGGCTTCGTCCAAAGGAATCTTCCAGAAGAGCTCCGAAACGGTCAAGGCGCACCCCTTCTCCTCGGTCAAGCCCAACCAGCCCTCCAACCCTTCCTCCAACTCCTTCTTCTCTAAGTACGAGCTTGCGGAGGAGGAGGTGAACCTGCCCAAGGTGGACCAGGAGGAGTACTGGGCCAACTACGGGAACGAAGATGCCTCCGTGCGCTGCTTCGAGCTTGAGTGTCCGCCCGGCTACGACACCCCGGtcctcctgccctcctcctccttctcccccactcagtctttcatccctctcctctccctttctgtgCTAACTCTCTGCCTCCACCTTCTCTTTGGCTGAACAGCCCTGTCAGCTTCTCTTTTTCTCCAACTCTATTTCTCCaactcctttctctttctcctctgcacACCTGGATCTTGATTCCTTTCAGTTTCCCCCCTGGCCCCCAGGGGGCGGTACACTGATGTAGgagcgggcaggcaggcaggcagtaggGAACTGCTCTCAGGAGTACAGGTGAGATGCAGTGTAGGACACCATTTGATTGGAGGGCACCGCTGCTGCTGATAGGGCTGAGCTCATTTTTCACtgagatgacatcacagcagcaggtTCTGTCGCCATTGACAGCACGATAGTGTGGCCAGCTTACGCAAGTTCCAATCACTACTGCTTCTACCgtactaacacaccacacaccaataCATCCATACATTTAGTACCACACCATAGCGCTGCATTCAATTCATACCACTCAGTAAGCTGGTGGCATTTTCAGGAATTTTATCACCATAACTACTAGTTTATATTCGCAGCGAACAACGCAGGCGTTGTGACACTGGCTATTTTGTATGGCGTCAAAACGCTCACCATTGTCAACCACTGCGTGCCAGTCCTGCTAAGAAAAGATTTTCAAAAGCAACACTTTCCTTTGGCTTCATCTTTGTCACTGACCTTTCAACCTTCACCTCTCTACCTGAGAGACCAGGGACACCAGAGTGCTGCTCCTACAGGGCTACCGCAGCAGGAGACAGAGAACACGGAGGGTATCTCATAGAGGGAATAGCAGGAAGACAAGAATACTTATGGACAAATACTGCAGTGAGACATCTGTCACTGAAATGGTAAAGGAGAGGTGGATAGATGTGAAGTAAAGGATGTGAGCGTGTTATGTAACAGGTATAGGACAGAAAGGAAAATACAAGACTTTCAAGGATGCTGGCAAGCAAGAGAcgggataaaagagagagagtgtgagagtgatAGGATTAAGAGTTGTTACGACATACAACAGACATCAGGCCAGGTCAGAGTGCCAGTAAGGGAGTGAAAATGAGGgtgcctctctccatctcccaacATTTGACATGTAATCTATTTTTCCTGTCAACACCATCAATAAAAACCACACTGTAAATATCTCACACGAACTCTGTAGGTAGTGATACACTTGTGACACTAGATAGCTACATACATGACACTGCTGTGTAGTTTATTGTATGAAGCCCATGCTTCAACATTCTTCAGGTTTTCTagtttttctttctctttttccatTGGTGATTGTTGCCATGAGCAACACCCTCATGTTTATTAGTAAAGATTGAGGAGATTTGAAAAGATATATGGAAATCTTTCCCTTCAATAGTCCGTCTCTACCTCTTGTTTCCAAGTCTGTCGTTCCCCTCGTGACCACagtgtgtgtctcgctctgtgttaATGTGAGATGCACACAGAAGGACGGTATACTGGGAAGAACCTATAGCCCATTATGGTGACTGAAGCCCGGGTCTAGCAGGTTTGATCCAGTCCAAAGGAGTGACAGTGTCCTGCTGCGGGTCAGCACCAGATAAGGAGTGCCCCAGTCATtcctttaatgtgtgtgtgtttgtcagtagcCTCTCGTGCTAAAAGTCGTTTAACAATCCCTCTCGTTAGCAAGCTGTGCTATTTAAATAAGTCTGACTCTAAGAGGATTCCACTGGGAGCAGAAGACACAGCTGTTTGATTCCAGAtctaacgcacgcacacacacacacacacacacactcccgacAGCAGGTGCATGGCTGAATGTACATCTCTGTCAAATCAAATGCAAACTCAACCAGGTAATAATGAGTGTCGGGGCATTTCTGTTTGTCACTCCCCATGTgccactccctctcctcccctgaccATGTGGTTGAATGGAATATGAAGGAAACTGTGATAATGTTGCACATTTTCTTTTCAATGGAAGCTGTGAATAAACATTTTCTTGGTTTTACTA

Function

NR:

description
PREDICTED: reticulon-4 receptor-like 2

GO: NA

KEGG:

id description
K16661 RTN4RL2, NGR2; reticulon-4 receptor-like 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561258.2 True 3425 mRNA 0.52 4 13168814 13174417

Neighbor

gene id symbol gene type direction distance location
LOC110488836 NA coding downstream 4128 13158680 ~ 13164686 (-)
LOC110488835 LOC106604661 coding downstream 10218 13153679 ~ 13158596 (-)
LOC110488833 LOC106611662 coding downstream 23637 13122200 ~ 13145177 (-)
si:dkey-6i22.5 pmf1 coding downstream 52396 13114642 ~ 13116418 (-)
med19a LOC106604664 coding downstream 54317 13107379 ~ 13114497 (-)
LOC110488839 LOC106604658 coding upstream 29466 13203883 ~ 13213465 (-)
LOC110488846 LOC106604652 coding upstream 133613 13308030 ~ 13310487 (-)
LOC110487735 LOC106604649 coding upstream 157844 13332261 ~ 13348339 (-)
LOC110488848 LOC106604648 coding upstream 183401 13357818 ~ 13366998 (-)
LOC110488850 LOC106604647 coding upstream 217268 13391685 ~ 13400674 (-)
G1216890 NA non-coding downstream 15306 13153276 ~ 13153508 (-)
G1216849 NA non-coding downstream 88946 13079662 ~ 13079868 (-)
G1216906 NA non-coding upstream 26681 13201098 ~ 13202373 (-)
G1216925 NA non-coding upstream 40662 13215079 ~ 13266417 (-)
G1216938 NA non-coding upstream 51594 13226011 ~ 13227315 (-)
G1216909 NA non-coding upstream 69404 13243821 ~ 13316860 (-)
G1217034 NA non-coding upstream 237479 13411896 ~ 13412160 (-)
G1216443 NA other downstream 326061 12841496 ~ 12842753 (-)
LOC110488817 LOC105028880 other downstream 340162 12820904 ~ 12828721 (-)
LOC110488811 LOC106604684 other downstream 600149 12563911 ~ 12568719 (-)
G1216013 NA other downstream 690347 12478019 ~ 12478467 (-)
G1215447 NA other downstream 1192037 11964493 ~ 11976777 (-)
LOC110488853 LOC106604605 other upstream 509367 13683784 ~ 13715500 (-)
LOC110488886 LOC106604622 other upstream 1382416 14542673 ~ 14642681 (-)
G1218808 NA other upstream 1819403 14993820 ~ 14994379 (-)
G1219208 NA other upstream 2143376 15317793 ~ 15318160 (-)
asb5a LOC101464329 other upstream 4223924 17395671 ~ 17399280 (-)

Expression


Co-expression Network