LOC110488839 (LOC106604658)


Basic Information

Item Value
gene id LOC110488839
gene name LOC106604658
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 13203883 ~ 13213465 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942980.1
AAGGGGAGTAGTTTTCTAAGAGTAGCTGGAGAGCTTCTTCTGAACTGTGAAGTGACTCCACCAGGGAACCTAAAAAGAGTGAAAGTGCGGGACAAGACCATGCTGGGTTGTGAGGGTGAGGCGGTGGTGCGGCGGTGGCTGACCCTGGTCACAGGACTGCTGGAGTGCCTGTGTTTTGCGGGGGCCGTTTTTGGCTGGGCCTCCCTGGTGTTCGTCCTGAAGACGGAAGGCTACTTCAGCTACCTGTGTGTCAACACTACCGGGGTCAATGGAACACAATTCCTAGactgcagTGCTCAGGATGAACAGTTCTCCCTCGTCTTCACCATCGCTTCCTTCATGAACAACTTCTTGCTGCTGCCCAACGGCTTCCTGTTTGACCGTTTTGGCACCATGGTGGCCAGGCTGCTGGGAATATCAATGTACACCTCTGGTGCCTTGTTTGTGGCCTTCTCAAGTTCAGcTCTGTCCGTTCTCCTCTTCCCGGCGCTGTCCTGCATCTCTGTGGGAGGCATCATGTTTCTGGTCACCAACATGCAGATAGGCAACCTGTTTGGTTCCACTCGCTCCACCATCATCACCCTCTACAATGGCGCCTTCGACTCCTCCTCCGCACTCTTTCTCATCAtcaagCTGCTATTTGAGGCTGGGATCTCTCTGCGTGCCTCTTTCCTCTTCCTGGCTGCGTGTGGCATCATCCACCTGGTCAGGACCTTCCTCCTGCTACCCAGAACACACATCCCGTACCCCCTCCCTGAGGGCTACACCTACGGAATAAACTGTGGCCAGACCAAGACTTTTAGCCCGGAGCAGACAGCAGCAATTGCCAGTGTGCAGAGTGAAGATGTCACGGAGGAAACGCCTTTTAACAAGGAGAGCGCAGAGAAAGTGGCTACTTTCTGGGAGTGTTTCCTGTCCAAGTTCTTCCTCTGGCACCTGGTGTGGCTATCTGTCATGCAGCTGAGACACTACCTGTTCATCGGCACCCTCAACCCCATGCTGCAGAGACTGACCCAGGGAGAACCCTctctggTGAGCACATACACCAATGCTTTTGCTGTGACACAGCTTTGTGGGGTGCTGTGTGCCCCCTGGAACGGCCTCATCATGGACCGACACAAGGGCAAGCCCAGGGCCCCAGgAATGAGTGAGAAGGAGGCAGACCTGCGTGCATCAGTGCTCTCCCTGACCCTGACGGCGCTGCAGTGTGTCCTGTTCTCCATTTGTGCCtccactcccttcctccccctccagtACCTCACCTTCATCCTGCAGGTCCTCAACCGATCCTTCCTCTATGGAGGCAATGCAGCCTTCATCAGCATTgcTTTTCCTCCGTGTCATTTTGGGAAGCTGTACGGTATGCTCATGGCTCTGTCTGCAGTGGTGGCTCTGCTGCAGTACCCTTGCTTCACCCTGGTCAAAGGAGTGCTGGGAGGAGACCCACTATACGTGAACATAGCCCTGACGTTACTTAGCCTGCTGGCTTTCATTCATCCTGTCTGTGTCTATCTGCACTGTTGTGGCCTGGCAGCCCAGAGGGGTAAACCCAAGgacactctcccctccccctcctcctagaCCAGCTCTAAAAagggaaacaaacacacactttaaAAAGGCCATTTCAACCCtcgctcctctgtttcttctccagtttatatattatatacagttgaagtcggaagtttacatacaccttagccaaatacatttaaactcagtttttcacaattcctgacatttaatcctagtaaagatgccctgtcttaggtcagttaggatcataactttatttt
>XM_036942979.1
GTAGTTTTCTAAGAGTAGCTGGAGAGCTTCTTCTGAACTGTGAGTGAAGTGACTCCACCAGGGAACCTAAAAAGAGTGAAAGTGCGGGACAAGACCATGCTGGGTTGTGAGGGTGAGGCGGTGGTGCGGCGGTGGCTGACCCTGGTCACAGGACTGCTGGAGTGCCTGTGTTTTGCGGGGGCCGTTTTTGGCTGGGCCTCCCTGGTGTTCGTCCTGAAGACGGAAGGCTACTTCAGCTACCTGTGTGTCAACACTACCGGGGTCAATGGAACACAATTCCTAGactgcagTGCTCAGGATGAACAGTTCTCCCTCGTCTTCACCATCGCTTCCTTCATGAACAACTTCTTGCTGCTGCCCAACGGCTTCCTGTTTGACCGTTTTGGCACCATGGTGGCCAGGCTGCTGGGAATATCAATGTACACCTCTGGTGCCTTGTTTGTGGCCTTCTCAAGTTCAGcTCTGTCCGTTCTCCTCTTCCCGGCGCTGTCCTGCATCTCTGTGGGAGGCATCATGTTTCTGGTCACCAACATGCAGATAGGCAACCTGTTTGGTTCCACTCGCTCCACCATCATCACCCTCTACAATGGCGCCTTCGACTCCTCCTCCGCACTCTTTCTCATCAtcaagCTGCTATTTGAGGCTGGGATCTCTCTGCGTGCCTCTTTCCTCTTCCTGGCTGCGTGTGGCATCATCCACCTGGTCAGGACCTTCCTCCTGCTACCCAGAACACACATCCCGTACCCCCTCCCTGAGGGCTACACCTACGGAATAAACTGTGGCCAGACCAAGACTTTTAGCCCGGAGCAGACAGCAGCAATTGCCAGTGTGCAGAGTGAAGATGTCACGGAGGAAACGCCTTTTAACAAGGAGAGCGCAGAGAAAGTGGCTACTTTCTGGGAGTGTTTCCTGTCCAAGTTCTTCCTCTGGCACCTGGTGTGGCTATCTGTCATGCAGCTGAGACACTACCTGTTCATCGGCACCCTCAACCCCATGCTGCAGAGACTGACCCAGGGAGAACCCTctctggTGAGCACATACACCAATGCTTTTGCTGTGACACAGCTTTGTGGGGTGCTGTGTGCCCCCTGGAACGGCCTCATCATGGACCGACACAAGGGCAAGCCCAGGGCCCCAGgAATGAGTGAGAAGGAGGCAGACCTGCGTGCATCAGTGCTCTCCCTGACCCTGACGGCGCTGCAGTGTGTCCTGTTCTCCATTTGTGCCtccactcccttcctccccctccagtACCTCACCTTCATCCTGCAGGTCCTCAACCGATCCTTCCTCTATGGAGGCAATGCAGCCTTCATCAGCATTgcTTTTCCTCCGTGTCATTTTGGGAAGCTGTACGGTATGCTCATGGCTCTGTCTGCAGTGGTGGCTCTGCTGCAGTACCCTTGCTTCACCCTGGTCAAAGGAGTGCTGGGAGGAGACCCACTATACGTGAACATAGCCCTGACGTTACTTAGCCTGCTGGCTTTCATTCATCCTGTCTGTGTCTATCTGCACTGTTGTGGCCTGGCAGCCCAGAGGGGTAAACCCAAGgacactctcccctccccctcctcctagaCCAGCTCTAAAAagggaaacaaacacacactttaaAAAGGCCATTTCAACCCtcgctcctctgtttcttctccagtttatatattatatacagttgaagtcggaagtttacatacaccttagccaaatacatttaaactcagtttttcacaattcctgacatttaatcctagtaaagatgccctgtcttaggtcagttaggatcataa

Function

NR:

description
PREDICTED: solute carrier family 43 member 3-like isoform X1

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08230 SLC43A3; MFS transporter, LAT3 family, solute carrier family 43, member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942980.1 False 1799 mRNA 0.53 13 13203883 13213465
XM_036942979.1 True 1787 mRNA 0.53 13 13203892 13213458

Neighbor

gene id symbol gene type direction distance location
LOC110488837 LOC106604660 coding downstream 29466 13168814 ~ 13174417 (-)
LOC110488836 NA coding downstream 39197 13158680 ~ 13164686 (-)
LOC110488835 LOC106604661 coding downstream 45287 13153679 ~ 13158596 (-)
LOC110488833 LOC106611662 coding downstream 58706 13122200 ~ 13145177 (-)
si:dkey-6i22.5 pmf1 coding downstream 87465 13114642 ~ 13116418 (-)
LOC110488846 LOC106604652 coding upstream 94565 13308030 ~ 13310487 (-)
LOC110487735 LOC106604649 coding upstream 118796 13332261 ~ 13348339 (-)
LOC110488848 LOC106604648 coding upstream 144353 13357818 ~ 13366998 (-)
LOC110488850 LOC106604647 coding upstream 178220 13391685 ~ 13400674 (-)
LOC118938697 NA coding upstream 432370 13645835 ~ 13661276 (-)
G1216906 NA non-coding downstream 1510 13201098 ~ 13202373 (-)
G1216890 NA non-coding downstream 50375 13153276 ~ 13153508 (-)
med19a LOC106604664 non-coding downstream 91498 13107379 ~ 13114497 (-)
G1216925 NA non-coding upstream 1614 13215079 ~ 13266417 (-)
G1216938 NA non-coding upstream 12546 13226011 ~ 13227315 (-)
G1216909 NA non-coding upstream 30356 13243821 ~ 13316860 (-)
G1217034 NA non-coding upstream 198431 13411896 ~ 13412160 (-)
G1216443 NA other downstream 361130 12841496 ~ 12842753 (-)
LOC110488817 LOC105028880 other downstream 375231 12820904 ~ 12828721 (-)
LOC110488811 LOC106604684 other downstream 635218 12563911 ~ 12568719 (-)
G1216013 NA other downstream 725416 12478019 ~ 12478467 (-)
G1215447 NA other downstream 1227106 11964493 ~ 11976777 (-)
LOC110488853 LOC106604605 other upstream 470319 13683784 ~ 13715500 (-)
LOC110488886 LOC106604622 other upstream 1343368 14542673 ~ 14642681 (-)
G1218808 NA other upstream 1780355 14993820 ~ 14994379 (-)
G1219208 NA other upstream 2104328 15317793 ~ 15318160 (-)
asb5a LOC101464329 other upstream 4184876 17395671 ~ 17399280 (-)

Expression


Co-expression Network