Gene
RNA
| Item | Value |
|---|---|
| gene id | smtnl1 |
| gene name | LOC106604657 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048578.1 |
| NCBI id | CM023232.3 |
| chromosome length | 43310081 |
| location | 13225979 ~ 13231303 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| smoothelin-like protein 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036943625.1 | False | 2185 | mRNA | 0.48 | 7 | 13226090 | 13231303 |
| TU1389116 | False | 849 | TUCP | 0.49 | 3 | 13225979 | 13228776 |
| TU1389117 | True | 846 | TUCP | 0.49 | 3 | 13225979 | 13228776 |
13,223,000
13,224,000
13,225,000
13,226,000
13,227,000
13,228,000
13,229,000
13,230,000
13,231,000
13,232,000
13,233,000
13,234,000
13,235,000
13,236,000
13,237,000
13,238,000
NC_048578.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110488838 | LOC106604659 | coding | upstream | 38988 | 13182470 ~ 13187102 (+) |
| tmx2a | LOC106611665 | coding | upstream | 106530 | 13116230 ~ 13120175 (+) |
| slc43a1a | LOC106604665 | coding | upstream | 118979 | 13061631 ~ 13107111 (+) |
| clcf1 | LOC106604667 | coding | upstream | 198097 | 13015329 ~ 13027993 (+) |
| zgc:113229 | LOC106604669 | coding | upstream | 257989 | 12961672 ~ 12968101 (+) |
| LOC110488842 | LOC106604656 | coding | downstream | 16002 | 13247305 ~ 13250098 (+) |
| LOC110488843 | LOC106604654 | coding | downstream | 23885 | 13255188 ~ 13299558 (+) |
| LOC110488844 | NA | coding | downstream | 73305 | 13304608 ~ 13307720 (+) |
| LOC110488845 | LOC106604651 | coding | downstream | 80638 | 13311941 ~ 13314294 (+) |
| LOC110488847 | LOC106604650 | coding | downstream | 89298 | 13320601 ~ 13326630 (+) |
| G1216626 | NA | non-coding | upstream | 21867 | 13202114 ~ 13204223 (+) |
| G1216609 | LOC106604660 | non-coding | upstream | 53526 | 13172254 ~ 13172564 (+) |
| G1216600 | NA | non-coding | upstream | 65704 | 13159743 ~ 13160386 (+) |
| G1216599 | NA | non-coding | upstream | 66875 | 13158713 ~ 13159215 (+) |
| G1216681 | LOC106604649 | non-coding | downstream | 101318 | 13332621 ~ 13333255 (+) |
| G1216716 | NA | non-coding | downstream | 151570 | 13382873 ~ 13385936 (+) |
| G1217031 | NA | non-coding | downstream | 177908 | 13409211 ~ 13409437 (+) |
| G1217045 | NA | non-coding | downstream | 188905 | 13420208 ~ 13420490 (+) |
| G1217099 | NA | non-coding | downstream | 295196 | 13526499 ~ 13526719 (+) |
| G1216530 | NA | other | upstream | 175414 | 13005017 ~ 13050676 (+) |
| G1216450 | ran1 | other | upstream | 303508 | 12919196 ~ 12922582 (+) |
| G1215252 | NA | other | upstream | 1382623 | 11843082 ~ 11843467 (+) |
| LOC110488808 | LOC106604600 | other | upstream | 1446118 | 11778890 ~ 11785680 (+) |
| si:ch211-235e9.8 | mgarp | other | upstream | 1789705 | 11426418 ~ 11446804 (+) |
| LOC110487741 | nudt6 | other | downstream | 1808963 | 14997793 ~ 15041211 (+) |
| G1218893 | NA | other | downstream | 1901559 | 15132862 ~ 15133316 (+) |
| G1219453 | nano1 | other | downstream | 2270961 | 15502264 ~ 15504778 (+) |
| G1219625 | NA | other | downstream | 2385199 | 15615929 ~ 15616976 (+) |
| G1222640 | NA | other | downstream | 4810042 | 18041345 ~ 18041649 (+) |
