LOC110488846 (LOC106604652)


Basic Information

Item Value
gene id LOC110488846
gene name LOC106604652
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 13308030 ~ 13310487 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561269.2
AGGATCTCTTGAAGCTCAACGCGAGATAGCGTTAGGCGCGTGTCACTACCGAGCTCATCACGAATAAGTGCCAAACTAGGTGTAAAGATGTACAGAACCACTAGATCACCAATGATGCAATCCCTTGTCAACTCGGGAATGGGCGTGGCTCCTTTCTTCAAGgtgactGTATTCGAGCAGGAGCACTTCCAGGGCAAGTGCCAGGAGTTCACCTCTGAGTGCTGTAACATCCACGAGTGTGGTCTGGACATCATCCGCTCCATCAGAGTGGAGAGTGGGGCCTGGGTGGGCTTTGAGCACCATGACTTCCAGGGCCAGCAGTTCatcctggagagaggagagtaccCCCATTGGGACGCCTACAGCGGTTCCCTGTCCTACCACGTGGAGCGCCTCATGTCCCTGCGTCCCATCTACTGTGCTTCCCACATGAGCAGTCGTATGATGATCTTTGAGAGAGAGAACTTCATGGGCCGCAGTGTTGAGCTGTGTGACGACTACCCCTCCCTGCAGGCCATGGGCTGGTCCATGCCTGAGGTCGGCTCCATGCACGTGCAGTGTGGCGCCTTTGTGTGCTACCAGTACCCCGGCTACAGGGGCCAGCAGTACATCATGGAGTGTGAGAGACACAGTGGAGACTACCAGCACTGGAAGAACTGGGGCTCCCACTCCCAGACCCCCCAGATCCAGTCTATCCGCCGTATCCAGCATTAAGAGGGGCTAGAGGCTGAGAGGCCCAAGAACCGCAATCCCCAGCCCAGATGCTGCTTTACCCTTTACCCCCCCAACGGAAGACCAGCTGCCCCTAACTACCGACTCACCAcataacactgacacacacagccgCTCCGAGGTACGATGAGACTATATCGCACCGGTAaagcacaggaacacacacacacacactgacatgactGACAtaacagtttattttttatcagGGTAgagcacccacacacagacacacacctgcgCTGTACTACCTGAACCCCTGTCCAGGTCACCTGGGCTGAGCAGGGAGCCACACATCCTGCTCGAACCAGAGGTCAACGCATCAACAGGCACCagtttcaagatggccaccaccGTAGTGCAGCCTTAATGTGATGTGTGTAGGAGGTTGAACCAAAGGTTAACTAATAAACTCATGTTCACTTCA

Function

NR:

description
beta-crystallin A1-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561269.2 True 1159 mRNA 0.55 6 13308030 13310487

Neighbor

gene id symbol gene type direction distance location
LOC110488839 LOC106604658 coding downstream 94565 13203883 ~ 13213465 (-)
LOC110488837 LOC106604660 coding downstream 133613 13168814 ~ 13174417 (-)
LOC110488836 NA coding downstream 143344 13158680 ~ 13164686 (-)
LOC110488835 LOC106604661 coding downstream 149434 13153679 ~ 13158596 (-)
LOC110488833 LOC106611662 coding downstream 162853 13122200 ~ 13145177 (-)
LOC110487735 LOC106604649 coding upstream 21774 13332261 ~ 13348339 (-)
LOC110488848 LOC106604648 coding upstream 47331 13357818 ~ 13366998 (-)
LOC110488850 LOC106604647 coding upstream 81198 13391685 ~ 13400674 (-)
LOC118938697 NA coding upstream 335348 13645835 ~ 13661276 (-)
LOC110487738 LOC106596785 coding upstream 372536 13683023 ~ 13697209 (-)
G1216925 NA non-coding downstream 41613 13215079 ~ 13266417 (-)
G1216938 NA non-coding downstream 80715 13226011 ~ 13227315 (-)
G1216906 NA non-coding downstream 105657 13201098 ~ 13202373 (-)
G1216890 NA non-coding downstream 154522 13153276 ~ 13153508 (-)
G1217034 NA non-coding upstream 101409 13411896 ~ 13412160 (-)
G1217327 NA non-coding upstream 339111 13649598 ~ 13649849 (-)
G1217335 NA non-coding upstream 353849 13664336 ~ 13664603 (-)
G1217339 NA non-coding upstream 357149 13667636 ~ 13667868 (-)
G1216443 NA other downstream 465277 12841496 ~ 12842753 (-)
LOC110488817 LOC105028880 other downstream 479378 12820904 ~ 12828721 (-)
LOC110488811 LOC106604684 other downstream 739365 12563911 ~ 12568719 (-)
G1216013 NA other downstream 829563 12478019 ~ 12478467 (-)
G1215447 NA other downstream 1331253 11964493 ~ 11976777 (-)
LOC110488853 LOC106604605 other upstream 373297 13683784 ~ 13715500 (-)
LOC110488886 LOC106604622 other upstream 1246346 14542673 ~ 14642681 (-)
G1218808 NA other upstream 1683333 14993820 ~ 14994379 (-)
G1219208 NA other upstream 2007306 15317793 ~ 15318160 (-)
asb5a LOC101464329 other upstream 4087854 17395671 ~ 17399280 (-)

Expression


Co-expression Network