LOC110487735 (LOC106604649)


Basic Information

Item Value
gene id LOC110487735
gene name LOC106604649
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 13332261 ~ 13348339 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942998.1
CACTAACAACCGCTGAACagggatagatagagacaggggaaagggagaaaagagaaggggagggaaaTCAAGGGAGTACCAAGGGAGAACAATTTTATTTTGGAAAAGTTAGCTATTTTCTGATTTTAAACttgggagagagaaagcaagTCAAAGCAGAATTTAGAAGAGTCCAGACAAAATGACTTTAATAGATACAGAACTAGTCAGTTTGAAGTGTCTGTAAAAAAATCCACTCCGAAaactagagaggagagggaggaagtgagagagagagtgagagcgagaaagagagggaacgagaaagggagggggagaaagagatagggCGTGTAAGAAAACAACACCGAGATGTTCATGATCATTCCGAAGGATTCTTCCGCTGGAGGAGGTGGTTCAGCAGGGATGAGCTCGCCGCACGGGAAAAGTGcaaaacagGTAAAAGCAGCGATCAGTAAGAAAGTTCAGAAACAGCAGATTAAGCAGAGGAGGCGGTCCAGTGAGCAGAGTGGAGACTCAGAAGTGTCAGCGGCTGGAGTCAACCCCCCCCATGGTAGGAGGTACAGCCAGACCCCCACCCCCTTccccagagatagagagagaggtacaggggatgaagaggaggcagaggaggaccTGGATGTGGAGGACCTGGATGTGGCAGATATGATGAAGACGAGTGGTCAGAAGCAGGAAGAGAAGGAGTCCATAGACCTGCTCCCTATAATGGACCCAGCATTTGGACCGGACAGGGACCTACGACCAGAGGAGATTGAAGAGCTTCGCGAGGCGTTTGTGGAGTTTGATAGGAAGAAGAATGGTTATGTCAGCTACAAGGACCTGGGAGAGTGCATGAGGACCATGGGCTACATGCCCACAGAGATGGAGCTCATCGAGCTGGGCCAGTCCATCTGTGGCGGCAAACTAGACTTTGAGGACTTTGTGGAGCTGATGGGCCCAAAGATGCTGGCAGAGACAGCAGACATGATCGGAGTGAAAGAACTGAGAGATGCATTCaaggagtttGATGCTAACAGTGATGGTCAGATCAGTATAATGGAACTGAGGGAGGCCATGAAGAAGCTGATGGGAGAACAGCTGACCAACAGAGAGATCGACGAGATCCTCCGAGACGTGGATCTCAACCAGGATGGACTGGTCGACTTTGAGgAATTTGTTCGAATGATGTCACGCTGAGATAACCATATGGTTGTTGTGCAACAACTGGAAAAGGTACCACTACGTTTGTAGTGAACAACTGGAAAAGGGACCACTAGATTTGTAGTGAACAACTGGAAAAGGGACCACTACGTTTGTAGTGAACAACTGGAAAAGGGACCACTACATTTGTAGTGAACATTCTTGTTCTACTGACTGGACCTCGGTTTGCTTTTTTTTGTTAAGCAGCACTTAAATTGTAGTTCTACAAATCTTGTAACTCAAGCTGTGACAGTTAAATTAAACATTGATTGGTTGTAACATATCAAAATCCTAATGCTTGGCTGTCTCTTATGAGTATCTCTTATCTTTTTAAAGTGTCTTTTTTTTAAGTGAATGTTTTTACTCTGATTGTATGTGTGTTCAAAGGTTTAACCTCGTTTGTAAAATGTGACGTTATTTTCAAATAAAAAGT

Function

NR:

description
PREDICTED: calcium-binding protein 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942998.1 True 1633 mRNA 0.46 7 13332261 13348339

Neighbor

gene id symbol gene type direction distance location
LOC110488846 LOC106604652 coding downstream 21774 13308030 ~ 13310487 (-)
LOC110488839 LOC106604658 coding downstream 118796 13203883 ~ 13213465 (-)
LOC110488837 LOC106604660 coding downstream 157844 13168814 ~ 13174417 (-)
LOC110488836 NA coding downstream 167575 13158680 ~ 13164686 (-)
LOC110488835 LOC106604661 coding downstream 173665 13153679 ~ 13158596 (-)
LOC110488848 LOC106604648 coding upstream 9479 13357818 ~ 13366998 (-)
LOC110488850 LOC106604647 coding upstream 43346 13391685 ~ 13400674 (-)
LOC118938697 NA coding upstream 297496 13645835 ~ 13661276 (-)
LOC110487738 LOC106596785 coding upstream 334684 13683023 ~ 13697209 (-)
LOC110488852 LOC106604643 coding upstream 339288 13687627 ~ 13704064 (-)
G1216909 NA non-coding downstream 15401 13243821 ~ 13316860 (-)
G1216925 NA non-coding downstream 65844 13215079 ~ 13266417 (-)
G1216938 NA non-coding downstream 104946 13226011 ~ 13227315 (-)
G1216906 NA non-coding downstream 129888 13201098 ~ 13202373 (-)
G1217034 NA non-coding upstream 63557 13411896 ~ 13412160 (-)
G1217327 NA non-coding upstream 301259 13649598 ~ 13649849 (-)
G1217335 NA non-coding upstream 315997 13664336 ~ 13664603 (-)
G1217339 NA non-coding upstream 319297 13667636 ~ 13667868 (-)
G1216443 NA other downstream 489508 12841496 ~ 12842753 (-)
LOC110488817 LOC105028880 other downstream 503609 12820904 ~ 12828721 (-)
LOC110488811 LOC106604684 other downstream 763596 12563911 ~ 12568719 (-)
G1216013 NA other downstream 853794 12478019 ~ 12478467 (-)
G1215447 NA other downstream 1355484 11964493 ~ 11976777 (-)
LOC110488853 LOC106604605 other upstream 335445 13683784 ~ 13715500 (-)
LOC110488886 LOC106604622 other upstream 1208494 14542673 ~ 14642681 (-)
G1218808 NA other upstream 1645481 14993820 ~ 14994379 (-)
G1219208 NA other upstream 1969454 15317793 ~ 15318160 (-)
asb5a LOC101464329 other upstream 4050002 17395671 ~ 17399280 (-)

Expression


Co-expression Network