LOC110488858 (LOC106604641)


Basic Information

Item Value
gene id LOC110488858
gene name LOC106604641
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 13738427 ~ 13748171 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943017.1
AGCAAGCAAGCTTGCTAGCGCAATATATCCAATacgatgaggatgaggatgaaatCACCCCCGATTTATGGCAGGAAGCTTGCTGGATTGTTATCAGTTCCTACTTTGATGAGAAGGGTCTGGTGCGACAGCAGCTGGACTCCTTTGATGAGTTCATCCAGATGTCTGTGCAGAGGATTGTGGAGGACGCCCCGCCCATTGACCTGCAGGCTGAGGCCCAGCACACCTCTGGAGAGGTGGAGGACCCGCCACGCTACCTGCTGAAGTTTGAACAGATCTACCTTTCCAAACCCACTCACTGGGAAAGAGATGGAGCACCTTCACCTATGATGCCCAACGAAGCCAGACTCCGGAACCTCACGTACTCTGCTCCCCTGTACGTGGACATCACCAAGACCATCATCAAGGAGGGAGAGGACCAGCTGCAGACCCAGCACCAAAAGACCTTCATCGGCAAGATCCCGATCATGCTGCGCTCCACCTACTGCCTTCTCAGCGGCCTGACGGACCGTGATCTCTGTGAGCTCAACGAGTGCCCGCTAGATCCCGGGGGCTACTTCATCATCAACGGCTCTGAGAAGGTCCTGATTGCCCAAGAAAAGATGGCCACAAACACAGTGTACGTCTTTGCCAAGAAGGACTCAAAGTACGCATACACAGGGGAGTGCCGCTCCTGCCTGGAGAACTCCTCGCGGCCCACCAGCTCCATCTGGGTCAGCATGATGGCCAGGGGAGGACAGGGGGTGAAGAAAAGTGCCATTGGTCAGAGGATCGTGTCCACTCTGCCCTATATCAGACAGGAGGTGCCCATCATCATAGTGTTCCGAGCCCTGGGCTTTGTTTCCGACAGAGACATCCTGGAGCACATCATCTACGACTTTGACGACCCTGAGATGATGGAGATGGTCAAGCCCTCCCTGGATGAGGCCTTTGTGATCCAGGAGCAGAACGTGGCCCTAAACTTCATCGGCTCTCGTGGTGCCAAGCCCGGTGTCACCAAAGAGAGGAGGATCAAGTACGCCAAGGAGGTGCTGCAGAAGGAGGTGCTCCCCCATGTCGGAGTCAGTGACTTCTGTGAGACCAAAAAAGCCTATTTCTTAGGGTACATGGTCCACAGACTGCTATTGGCTGCTCTGGGCAGAAGAGAGCTGGATGACAGGGATCACTACGGCAACAAAAGATTGGACCTGGCTGGGCCTCTGTTGGCTTTCCTGTTCCGAGGAATGTTCAAGAACCTGCTGAAAGAGATCCGCATCTACGCCCAGAAGTTCATTGACAGAGGGAAAGACTTCAACCTGGAGTTGGCCATCAAGACACGCATCATCTCCGATGGCCTGAAGTACTCTCTTGCCACGGGGAACTGGGGTGACGTCAAGAAGGCCCATCAGGCCAGAGCTGGAGTGTCCCAGGTGTTGAACCGCTTGACCTTTGCCTCAACCCTCTCCCATCTTCGACGGGTGAACTCCCCCATCGGTCGAGACGGCAAGCTAGCCAAGCCCAGGCAGCTTCACAACACGCTGTGGGGCATGGTGTGCCCTGCCGAGACCCCCGAGGGTCATGCTGTAGGCCTGGTGAAGAACCTGGCCCTCATGGCTTACATCTCTGTGGGCTCCCAGCCCTCTCCCATCCTGGAGTTCTTGGAGGAGTGGAGCATGGAGAACCTGGAGGAGATCTCACCTGCAGCCATCGCAGATGCCACAAAGATCTTTGTGAATGGCTGCTGGGTGGGAATACACAAGGACCCAGAGCAGCTGATGAACACACTGAGGAAACTGAGGAGGCAGATGGACATCATTGTGTCTGAGGTGTCCATGATCAGAGACATCCGAGAGAGGGAGATCCGCATCTACACAGACGCCGGGAGGATCTGTCGTCCTCTGCTGATCGTAGAGAAACAGAAGCTGCTGCTGAAGAGGAGACACATCGACCAGCTGAAGGAGAGGGAGTACAACAACTACAGTTGGCAGGACCTGGTGGCCAGCGGCGTGGTGGAGTACATCGACACCCTGGAGGAGGAGACAGTGATGCTGGCCATGACCCCTGACGACCTCCAGGAGAAGGGCGTGGCCTACTGTTCTACATACAGCCACTGTGAGATCCACCCCTCCATGATCCTGGGAGTCTGTGCTTCCATCATCCCCTTCCCCGATCACAACCAGTCTCCCAGAAACACGTACCAGTCTGCTATGGGTAAACAAGCCATGGGTGTGTACATCACCAACTTCCACGTGCGGATGGACACCCTGGCCCATGTGCTCTACTACCCCCAGAAACCCTTAGTCACCACTCGCTCTATGGAGTACCTGCGTTTCAGAGAGCTCCCAGCAGGTATCAATTCTATTGTGGCTATTGCGGCGTACACTGGCTACAACCAGGAGGACTCTGTCATCATGAACCGCTCTGCGGTGGACCGTGGATTCTTCAGGTCTGTGTTCTACCGCTCCTATAAAGAACAAGAGTCGAAGAAAGGCTTTGATCAGGAGGAAGTCTTTGAAAAACCCACACGCGAAACATGTTCGGGTATGAGGCACGCCATTTACGACAAGCTGGACGACGACGGCCTGATAGCTCCCGGCGTGCGCGTCTCCGGCGAGGACGTGATCATCGGCAAGACGGTGACCCTGCCGGAGAACGACGACGAGCTGGACAGCACCAACCGGCGCTACACCAAGAGGGACTGCAGCACCTTCCTCCGCACCAGCGAGACGGGCATCGTGGACCAAGTCATGGTCACCCTCAACCAGGAGGGCTACAAGTTCTGCAAGATCAGGGTTCGCTCTGTTCGTATCCCCCAGATTGGTGACAAGTTTGCCAGTCGACACGGGCAGAAGGGTACTTGTGGTATTCAGTACAGACAGGAGGACATGCCCTTCACTTGCGAGGGAATTACCCCAGACATCATCATCAACCCCCATGCCATCCCCTCTCGTATGACAGTCGGCCATTTGATCGAGTGCCTGCAGGGCAAGGTTTCAGCCAACAAAGGGGAGATTGGTGACGCCACACCTTTCAACGATGCGGTCAACGTGCAGAAGGTCTCCAACCTGCTGTCTGAATACGGATATCACCTGAGGGGCAACGAGGTGTTGTACAACGGTTTTACCGGCCGTAAGATTACCTCTCAGATCTTCCTCGGTCCCACATACTACCAACGCCTAAAGCACATGGTGGACGACAAGATCCACTCTCGGGCCCGAGGCCCTGTCCAGATCCTCAACAGACAGCCCATGGAGGGCAGATCACGTGATGGAGGTCTTCGTTTTGGGGAGATGGAGCGTGATTGTCAGATAGCCCACGGCGCGGCTCAGTTCTTGCGTGAGAGGCTGTTCGAGGCGTCTGACCCCTACCAGGTCCACGTCTGCAACCTCTGTGGCCTCATGGCCATCGCCAACACCCGTACACACACCTACGAGTGCAGGGGCTGTCGCAACAAAACACAGATCTCACTGGTCAGAATGCCATACGCCTGCAAGCTGCTCTTCCAGGAGCTCATGTCCATGAGTATCGCCCCTCGCATGATGACCAGTTAGGAGCACTACTAAACCCCTGTCCAGTCAACAGGAATTGAATTGTGTTGTAGGAATGTCGAGGACATCGCTTATCTCTTCAGTGGGAGAGATGGAGCCTCAGGAGACAAAAACCAAACGCAACAGTCAACTTGTTTTGACGCTAATGGTCAGGTCCCCACGATTTGTCTCGCAAAATTATTTTGGCCGTGATATCACTGTTTTATAAAGGAAGGAACATCATCTCGGTTGTTTTTGTCAAACTAGAATAAATAAATGTTGGTTTTTAATTTAT
>XM_036943016.1
TGACGTTTTACGATAGACCGTCAATATTTCTTTTTGTATTAATTTAGATAGCAAAGTGTGCAACGTTAGACAACGTTGAATCCGACACTGTTGATGATTTAAACGTCGGATTCTGCTTATTTAGGCAAACACGAGAGGGAATAAGCAGTAACCATGTATGACCAAGATGAAGATATCCAATacgatgaggatgaggatgaaatCACCCCCGATTTATGGCAGGAAGCTTGCTGGATTGTTATCAGTTCCTACTTTGATGAGAAGGGTCTGGTGCGACAGCAGCTGGACTCCTTTGATGAGTTCATCCAGATGTCTGTGCAGAGGATTGTGGAGGACGCCCCGCCCATTGACCTGCAGGCTGAGGCCCAGCACACCTCTGGAGAGGTGGAGGACCCGCCACGCTACCTGCTGAAGTTTGAACAGATCTACCTTTCCAAACCCACTCACTGGGAAAGAGATGGAGCACCTTCACCTATGATGCCCAACGAAGCCAGACTCCGGAACCTCACGTACTCTGCTCCCCTGTACGTGGACATCACCAAGACCATCATCAAGGAGGGAGAGGACCAGCTGCAGACCCAGCACCAAAAGACCTTCATCGGCAAGATCCCGATCATGCTGCGCTCCACCTACTGCCTTCTCAGCGGCCTGACGGACCGTGATCTCTGTGAGCTCAACGAGTGCCCGCTAGATCCCGGGGGCTACTTCATCATCAACGGCTCTGAGAAGGTCCTGATTGCCCAAGAAAAGATGGCCACAAACACAGTGTACGTCTTTGCCAAGAAGGACTCAAAGTACGCATACACAGGGGAGTGCCGCTCCTGCCTGGAGAACTCCTCGCGGCCCACCAGCTCCATCTGGGTCAGCATGATGGCCAGGGGAGGACAGGGGGTGAAGAAAAGTGCCATTGGTCAGAGGATCGTGTCCACTCTGCCCTATATCAGACAGGAGGTGCCCATCATCATAGTGTTCCGAGCCCTGGGCTTTGTTTCCGACAGAGACATCCTGGAGCACATCATCTACGACTTTGACGACCCTGAGATGATGGAGATGGTCAAGCCCTCCCTGGATGAGGCCTTTGTGATCCAGGAGCAGAACGTGGCCCTAAACTTCATCGGCTCTCGTGGTGCCAAGCCCGGTGTCACCAAAGAGAGGAGGATCAAGTACGCCAAGGAGGTGCTGCAGAAGGAGGTGCTCCCCCATGTCGGAGTCAGTGACTTCTGTGAGACCAAAAAAGCCTATTTCTTAGGGTACATGGTCCACAGACTGCTATTGGCTGCTCTGGGCAGAAGAGAGCTGGATGACAGGGATCACTACGGCAACAAAAGATTGGACCTGGCTGGGCCTCTGTTGGCTTTCCTGTTCCGAGGAATGTTCAAGAACCTGCTGAAAGAGATCCGCATCTACGCCCAGAAGTTCATTGACAGAGGGAAAGACTTCAACCTGGAGTTGGCCATCAAGACACGCATCATCTCCGATGGCCTGAAGTACTCTCTTGCCACGGGGAACTGGGGTGACGTCAAGAAGGCCCATCAGGCCAGAGCTGGAGTGTCCCAGGTGTTGAACCGCTTGACCTTTGCCTCAACCCTCTCCCATCTTCGACGGGTGAACTCCCCCATCGGTCGAGACGGCAAGCTAGCCAAGCCCAGGCAGCTTCACAACACGCTGTGGGGCATGGTGTGCCCTGCCGAGACCCCCGAGGGTCATGCTGTAGGCCTGGTGAAGAACCTGGCCCTCATGGCTTACATCTCTGTGGGCTCCCAGCCCTCTCCCATCCTGGAGTTCTTGGAGGAGTGGAGCATGGAGAACCTGGAGGAGATCTCACCTGCAGCCATCGCAGATGCCACAAAGATCTTTGTGAATGGCTGCTGGGTGGGAATACACAAGGACCCAGAGCAGCTGATGAACACACTGAGGAAACTGAGGAGGCAGATGGACATCATTGTGTCTGAGGTGTCCATGATCAGAGACATCCGAGAGAGGGAGATCCGCATCTACACAGACGCCGGGAGGATCTGTCGTCCTCTGCTGATCGTAGAGAAACAGAAGCTGCTGCTGAAGAGGAGACACATCGACCAGCTGAAGGAGAGGGAGTACAACAACTACAGTTGGCAGGACCTGGTGGCCAGCGGCGTGGTGGAGTACATCGACACCCTGGAGGAGGAGACAGTGATGCTGGCCATGACCCCTGACGACCTCCAGGAGAAGGGCGTGGCCTACTGTTCTACATACAGCCACTGTGAGATCCACCCCTCCATGATCCTGGGAGTCTGTGCTTCCATCATCCCCTTCCCCGATCACAACCAGTCTCCCAGAAACACGTACCAGTCTGCTATGGGTAAACAAGCCATGGGTGTGTACATCACCAACTTCCACGTGCGGATGGACACCCTGGCCCATGTGCTCTACTACCCCCAGAAACCCTTAGTCACCACTCGCTCTATGGAGTACCTGCGTTTCAGAGAGCTCCCAGCAGGTATCAATTCTATTGTGGCTATTGCGGCGTACACTGGCTACAACCAGGAGGACTCTGTCATCATGAACCGCTCTGCGGTGGACCGTGGATTCTTCAGGTCTGTGTTCTACCGCTCCTATAAAGAACAAGAGTCGAAGAAAGGCTTTGATCAGGAGGAAGTCTTTGAAAAACCCACACGCGAAACATGTTCGGGTATGAGGCACGCCATTTACGACAAGCTGGACGACGACGGCCTGATAGCTCCCGGCGTGCGCGTCTCCGGCGAGGACGTGATCATCGGCAAGACGGTGACCCTGCCGGAGAACGACGACGAGCTGGACAGCACCAACCGGCGCTACACCAAGAGGGACTGCAGCACCTTCCTCCGCACCAGCGAGACGGGCATCGTGGACCAAGTCATGGTCACCCTCAACCAGGAGGGCTACAAGTTCTGCAAGATCAGGGTTCGCTCTGTTCGTATCCCCCAGATTGGTGACAAGTTTGCCAGTCGACACGGGCAGAAGGGTACTTGTGGTATTCAGTACAGACAGGAGGACATGCCCTTCACTTGCGAGGGAATTACCCCAGACATCATCATCAACCCCCATGCCATCCCCTCTCGTATGACAGTCGGCCATTTGATCGAGTGCCTGCAGGGCAAGGTTTCAGCCAACAAAGGGGAGATTGGTGACGCCACACCTTTCAACGATGCGGTCAACGTGCAGAAGGTCTCCAACCTGCTGTCTGAATACGGATATCACCTGAGGGGCAACGAGGTGTTGTACAACGGTTTTACCGGCCGTAAGATTACCTCTCAGATCTTCCTCGGTCCCACATACTACCAACGCCTAAAGCACATGGTGGACGACAAGATCCACTCTCGGGCCCGAGGCCCTGTCCAGATCCTCAACAGACAGCCCATGGAGGGCAGATCACGTGATGGAGGTCTTCGTTTTGGGGAGATGGAGCGTGATTGTCAGATAGCCCACGGCGCGGCTCAGTTCTTGCGTGAGAGGCTGTTCGAGGCGTCTGACCCCTACCAGGTCCACGTCTGCAACCTCTGTGGCCTCATGGCCATCGCCAACACCCGTACACACACCTACGAGTGCAGGGGCTGTCGCAACAAAACACAGATCTCACTGGTCAGAATGCCATACGCCTGCAAGCTGCTCTTCCAGGAGCTCATGTCCATGAGTATCGCCCCTCGCATGATGACCAGTTAGGAGCACTACTAAACCCCTGTCCAGTCAACAGGAATTGAATTGTGTTGTAGGAATGTCGAGGACATCGCTTATCTCTTCAGTGGGAGAGATGGAGCCTCAGGAGACAAAAACCAAACGCAACAGTCAACTTGTTTTGACGCTAATGGTCAGGTCCCCACGATTTGTCTCGCAAAATTATTTTGGCCGTGATATCACTGTTTTATAAAGGAAGGAACATCATCTCGGTTGTTTTTGTCAAACTAGAATAAATAAATGTTGGTTTTTAATTTAT

Function

NR:

description
PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform X1

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0032549 ribonucleoside binding molecular_function

KEGG:

id description
K03010 RPB2, POLR2B; DNA-directed RNA polymerase II subunit RPB2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943017.1 False 3801 mRNA 0.54 24 13738427 13747910
XM_036943016.1 True 3949 mRNA 0.54 24 13738427 13748171

Neighbor

gene id symbol gene type direction distance location
LOC110488853 LOC106604605 coding downstream 22927 13683784 ~ 13715500 (-)
LOC110488852 LOC106604643 coding downstream 34363 13687627 ~ 13704064 (-)
LOC110487738 LOC106596785 coding downstream 41218 13683023 ~ 13697209 (-)
LOC118938697 NA coding downstream 77151 13645835 ~ 13661276 (-)
LOC110488850 LOC106604647 coding downstream 337753 13391685 ~ 13400674 (-)
LOC110488856 LOC106604639 coding upstream 5182 13753353 ~ 13764618 (-)
LOC110488862 exosc3 coding upstream 43082 13791253 ~ 13793746 (-)
LOC110488864 LOC106604798 coding upstream 46382 13794142 ~ 13796834 (-)
abca1b LOC106604636 coding upstream 53762 13801933 ~ 13840874 (-)
tbc1d2 LOC106604634 coding upstream 121904 13870075 ~ 13896532 (-)
G1217351 NA non-coding downstream 55673 13682524 ~ 13682754 (-)
G1217350 NA non-coding downstream 56927 13681270 ~ 13681500 (-)
G1217349 NA non-coding downstream 57551 13680537 ~ 13680876 (-)
G1217339 NA non-coding downstream 70559 13667636 ~ 13667868 (-)
G1217480 NA non-coding upstream 29412 13777583 ~ 13780174 (-)
G1217478 NA non-coding upstream 39021 13787192 ~ 13790418 (-)
G1217501 NA non-coding upstream 79837 13828008 ~ 13829624 (-)
G1216443 NA other downstream 895674 12841496 ~ 12842753 (-)
LOC110488817 LOC105028880 other downstream 909775 12820904 ~ 12828721 (-)
LOC110488811 LOC106604684 other downstream 1169762 12563911 ~ 12568719 (-)
G1216013 NA other downstream 1259960 12478019 ~ 12478467 (-)
LOC110488886 LOC106604622 other upstream 808662 14542673 ~ 14642681 (-)
G1218808 NA other upstream 1245649 14993820 ~ 14994379 (-)
G1219208 NA other upstream 1569622 15317793 ~ 15318160 (-)
asb5a LOC101464329 other upstream 3650170 17395671 ~ 17399280 (-)
G1225043 LOC108238713 other upstream 6087707 19835878 ~ 19836319 (-)

Expression


Co-expression Network