LOC110488856 (LOC106604639)


Basic Information

Item Value
gene id LOC110488856
gene name LOC106604639
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 13753353 ~ 13764618 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561286.2
gatCATGACCAGCTGGTGTGtgtcaattacattttttttacaggcAAACTCCCCCACCTATGCTTCTGGTGTAATTCATGACCTGGAAGCCTTGAGTTGTTTATAACACTTTCATCAAGCTGAAAATCTGTCTCTATTTGCAACAGACCCATGACTATACAGTTGAAAATACCACATTTCACAAGTGAGGGCACGTGTCTGCCCAGACTAGAGCCTGCTTCCTGGAATGCTCCAAAAGACTTTGGACCCAACCATGGACCCAACAGACCAAAGTTAGTTTTTGTGCAGCAGTACACTGTTGGCCGGAGAATGCAGTCTGTGTGGGTTGCTCTCatgttatattttttattttgcatTTAGGCCTGGTAGATCCTCTCCTGAAACATTCCCCACACACAGAGGTCACACAGAAGGATGGGCATCACTTGAACCATCCCATccagATTGTATGGCCATTTGGAACATTGGGATTTGGAAAGAAGAAGCCCCCGGCAGAAACACTAGCTGGCGCTGGCGCTGACGTCAGCCATCCCTGCAAACAGACGGAGCCAGGCCGATGTGTAGGAATGTGTGGAAACTTCTTCCGTGAATAGTTTGTGTACTATTACATCGATAATATAGACCGAATACCGACAAGGAGTGGATACAGATATACGCCCTCCCAGCATGGCTTCTCAGACGGTATATCCAATGGGGTTGGTCATGTATGCCACCTCAGCTGGCATGCCCTTGGTGGAGGATGCCCAGGGGTTGGCTGAGCTTCCACAGAATGAGCTGCCGGCCCCACAGCTGGTCATGCTCGCCAACGTAGCCTGTGAAAATCCAACAGAAGGGAAGGAGATGATGGAGCTTCAAACCGTCGGCAGCAGCAGCTACTCCGATAGTGAAGACGAGAACATCATCAGATACAGTTACGATAGccatgagagagagatgtgtattgtAGACTACCCAGAGTCTCCACGGGTGGCCCTTTCCCAGGTTGAGGAGATTGACAATGAAGTAGAAGAGGAAGAAGGTCTGGACCTGTCCAAACCATCTGAAAAGCGTCCTTCTAGCCCTCCCACCCCTTTTACCCCTTCTACCCCTCTGGGCATGATCATGGAGTCAGCTAAGAAGAAGAAACCCTTCTTCTGTAAACCCTGCAACTACCAGGCCCAGCGAGAGGAGGAGTTTGTAACCCACATCCAAATCCACAGTGCCAATAGGATGATCGTGGTGAAACGCGTGGAGGGGGACAAGGCACGGGCAAAAGAGACTTTGGCGGGACCAGATCAAGAGGCGGAGAGCGGTGATGGTGGGGCCAACAACAAAGGGGTGATCCGCTGTGAGCGCTGCGGCTACAACACCAACCGCTACGACCATTACATGGCTCACCTCAAGCACCACGAGAAGGAGGGCGACGACCAGAGGGTCTACAAATGCACCATCTGCACTTATACCACCGTCAGCCAGTACCACTGGAGGAAGCACCTCAGGAACCATTTCCCCAGTAAGCTCTTCACCTGCAACCAGTGCTGCTATTTCTCGGACCGTAAGAACAACTACGTGCAGCATATCCGCACCCACACAGGGGAGCGTCCTTTTCGATGTCCGTACTGTGAGTACTCAAGCTCCCAGAAGACCCATCTTACCAGGCATATGAGAACCCACTCAGGTGAAAGGCCTTTCAAATGTGACCGCTGCAACTACCTGGCTGCCAATCAGCATGAGGTGACACGCCATTCCAGACAGGTTCACAATGGGCCCAAGCCCCTGTGCTGCCCCCACTGTCCATACAAGACGGCTGATCGCAGCAACTACAAGAAGCATGTGGAGCTCCACCTCAACCCGCGTCAGTTCCTTTGTCCTGTTTGCAAGTACGCCGCTTCCAAGAAGTGTAACCTGCAGTATCACATCAAATCCAGACATCCCGGCTGCCCACAGATTGCAATGGATGTGTCAAAGGTCAAGCTGCGTGTCAAGAAACCTGATTCTGATGAATTTGCTGATGAGTACACCATCGTGAATGGAATTGCAAAGTTTGAGCTGTCTGCAattgatgatgaggaggaggacatggaggagagaccagagatcTCTGGAGCTGATAAACAATCAAGCCATATCAATCTCTCAACCAAGAAGAGCAGCAATCCCGTCCCTCTTCAAGCTGCAGAAAGTGTAGCAACAGACAAGACCCAAAAGAAATGTTGTGTCTCCCCTGTCAAAGAGACACCTAAAAAGGCAAAGGACAAGGCAGAGAAAAAGGTAACACTGAAACGCAAGAGTACAGAGATGAGCAGTGAGAATACAAAGCAGCATGTTACCCTGAAGGAGACAGCAGCTGCAGTTCAAACCACAGGTTATAAAGTTAAGAGACGTCCCAAAAAACAGATGAAGGGGAAAACGAGTGTTCAGGATAAGAGTGAAATAAAGGAAACCGTGGAAAAAGTTCAAAAGGCGAGTTTGGAAGAGGACGATGTTGAGAAGGAGAAATCGGTCAAGGAGACGTTAGAGAAAGACATGCTGGAGAGGGAGAATATGGAGAAAGTGAAGGAGGAAAACAagaagctggagaaggagaaAAAAGAGCAGCTGGGAACACTGAAGAATGAGAGGGAAGGAAAAGagaacaaaaacacaacaaaatctaAGAAGAGTCCTTCTAAAAAAATTAAGAAAGTGGTTGATAAGACTGTTGCAAAAGCACCTCAAAGTCTGGACGCACCAGTGGAAAAACAGGGAGCGAAGAGCAGGACGAAGCCGCTAAAGAGAAAGGCTGCAGAGGCCTTGGACTTATCAATGAAGGAATCTCCTGAGGAGCCCTGCACCAACATAAAGGCCAAACGGTTAAAAATCAAGGCTGGTCACAAGTCACAATCAAAAGCCAGTATCCGCCAAAGCATGACGACTGAGCCTTGCCCAGTGTCAGAACAGGAGAACCCAGCAAACCAGATTATGAACTCGCCTGTGAAAAAGAGCAACAAGACAGAAGCAAGCTATGAAGAGACCGAGGCTTCCAGTGAGAACAAGGGGTGTTCCATCATTGAGAACCCTATTAGCCTCCCTGAAAACAAAAAGGGTCCAGCTACAAAGCTTCAGCCAACAGTTCTACAGGGAGAGCAGAAGGCGTCTGACCAGGAGACTGTCCCCGCTATGCATACCTCTACATCTCAGGACACAACTCCACAGGCTGAGCAGGCTACGGTCGCCGACCATTCAGAGGAAACTCCTACTCCTGAAGACGAGTCCCCATCTCCCACAGAAATTGACGGCTCTCCCGATTTCAGACGACCACAGGGAGAACcatcaacaccaacaacaccCTCCCTGGAGCTCCCTAGGCCAAGAGGAAAGCCTACCGAAACTGAAGAGGACGAGGGCATCCACAGCCATGACGGAGGAAGTGAGATCAGTGATAGCGCCTCGGAGGGCAGCGACGACTCGGGGCTCAACGGACTGGCCGCTGCCGCCGGCAAACTGGCCAATGACCCTGAAACTCCCACAGAAGAGATTCCGACTCCAACAGAACTCAAGAGTCACATGTGTATTTTCTGCGACCGTACCTTCCCCTTGGAGGTGGAGTACCGTCGGCACCTGAATCGCCACCTGGTGAATGTGTATTATCTTGACAATGCATCCAAGCTGGACCAGTGAGTGCAGAGCAGGGGGCTTTGATTTATCCCATTTTAATCAGTTTCAGCAGTGTATTTTTGTTTTACCCTTTCTACCTGTTATAAAACATAATTGTCTGTGTAAATATGTTGACACTACATATTCAGTTACCTTGCATTAGTGCTCACTAGTAAGTACTGTATAAAATATTATATGGTATGCCTAAAACTCTCTGACAGCCATTGTAATACAGTTTTAGGCCGACTAGTTCATTTGATTATTGGTGTCTGGGCTTTCACGGATTGGTTCCCAGACATTTTGACTATTAATTCTACAGTTCTTGTTTTCAAACATGATAGGATGCCTTTAATTGAAATCGTAAAGGATATGTGAGTTAATACGTGAGAGGCCCCCAAAAATGTTTCATTGTTTGGCATTTGGCTGAAACACACATCAAAGAAAATATGGGATATTAATTTTGTTGCTCGTAAATCTCAGAATACTTGTAAATCTCAGAATACTTGTAAATCTCAGAATACTTGTAAATCTCAGAATACTTGTAAATCTCAGAATACTTGTAAATCTGATATGGTTATTCAACTACTGGTATCTAAAATCGAATAGCATTGTATATATCTTACATATATAGTGGTTGATAGTCAAGAAATCGCTACACCTTGCCGGTTGAGTTTCTATATTAGAAGAAGCCACCTAGAGACGAGTTGCACCAGGTTTTTGTATTTTTATCCATCAGCCATGTTGAACAACAACAGTACATCTATTATGAAAGGAAGTGGTACACTTTTTCAATTAAGTACCAAAGAAACCCCTTCATTCACACAGGGATTATATTAGAAGGACCCAGGTGGTCCTGTTGTGTGAGTCCACTCCAGTGACGTGGTCTGTGCCCTAAATAGGGAAGAGGGCTGCATGTTCAAAGTCGGCACACGTGTAAGTTGTCCACTCCACCATTTAGGGAGCACTTGACAGCTActttaatttgtatttttattgataacatcaagagatttttttttttttaaacattgtatAAATTAATGATCAATCTTCACAATGGACTAATTATAAAAATCTCTTAATTACAAAAAAACTTGACTTACACTCAAATTGATGAACTATGAAATGGGGCGAGTTTTTTTTTTGGTTCATCCGGTACAATGGTGGCGAGATGTGTATAGAATTGTTTCTTGAGTTAATGTTTGAAATATGTTGTCACTTTTTGAATATCCAAGTAAATGTAGTCATGCAAAAAAAACTCATACTACTCATTAATAAATGCACAACTCTGTGGAAGGTAGGGTGTTCCTAGTGTCAGCCTACTGGACCTTGACATTTGTAGCCCTCTAGAACTTAAGATATGGATAGAGATTTTCTGGGTGGTATAAACAGATACTATGTTACTATCACTGACAGAGAATAGACAGCTAACATTGAAAACAAGTTGTGAAATGGAAGTTTGTGAACACACCATTATCGGTTTTGTATCTGATTTCAGAAAAAGTCCaaagatatttttatttttttagttgTTGAGCCTGCGAAGATGCCCGTAGTTccacatttttttcttcttcttattttttTACTCTTCAGTGCCTTCGACAAtcagtattttatgtttttgcaTATTAACAGTGTAGGTTTCTGTTAATTGAGTCACATTCTTTGTACACTGTAAGAGCTCTGATTTCAATTACATTGTTGTTACATCATGTCTATCTTTATAACCATTCCTTGAGGTTTAGTTGTAATTGTTTGATTTCTCTGACTGTGTCTGTTTTTATTACCCCACTCATCTGTTTTTACAGAATTGTACTTCCAAAGCGTAGCCTGTGAAATACTTCATTCATATGCATTTAGTTTTCTGTACTATGAGGTGATTGTTAGACTGagctaataataaaaaaaatatgccaTGTGTACTCTTTTAGTAAATTCAGTGCAATATATTTTGGGTGTGATGCCAAAGTGAGAAGATATAGAATTATAACGATGTATGTCTTGAGTATCCTGACTATTGGAAGGAACAGACTATACCAGGGTTCCCTGGGAAACTGGTCCAATTTAGCCGATGTGCTCTTGAACCAGTCTATAAATGCAGTTTCCCAGGGAACCCTATCTAGACAGATTCCGTAGCACTGTAAATGTACACCTTTTATCTCTTTGTTCACTTACTGTATTGTGCTTGTTAGTGGATAAGAACTGTATTTCAGTCATTGTAACCATTTTGCATTCACATATTGTAATCATGTGTACCGTAAAACTTCAATTAAATGCTGAGTCTCAAATTGCCAGCCGCCTGTTCATTTTAATAGCTGGGAATCggcacacatttcagcaaataaacGAATGTTTCAAATGAATTCCCGGGTCTAATGAATTGCTTACGATATTCCCATGTgcattaattatttatttttattctgtcattgttgctagccatGTCGCCACCAAAAAGAAAAAACTACATTAAATTCATGTTGCTGAAGGGTGAAATTGGGGTGTATGATAAGCAGCTTTTGCTAGTCTGATCTGCGATGGATTTGTTATTATGTTTATACTGGTCACAAACTGTGGTAGTCTTTACAACATTTTATTGAGGAAAAGCTGTGTGCATTAGGAAATAGAAGCCTGGCTCAAATAAGCGCCGGTTGTGTTCAGCGATTAAAGCAAATACATGCCCAggctatttatttttattttttactgttagCTTATACCTGTCATTTGCAGTTAGTGAAGAAATGTACTCTTTTTCAATATAATAATTGACAACTAACTTCTATTAACACCTTCACCAAAGTGGGGAGTTATTGGCCATTGTCCCTAAGACTTTTTGAAAACAATTGGCTGTTTTAAAAACCATTTTGTGCAGTTTAAAACAAAGCATCCTGTACCATTTTCTGCTCTACACTTTTTAATAAAAGTTGGCCTAATATCCAGA
>TU1390181
GACCAGCTGGTGTGtgtcaattacattttttttacaggcAAACTCCCCCACCTATGCTTCTGGTGTAATTCATGACCTGGAAGCCTTGAGTTGTTTATAACACTTTCATCAAGCTGAAAATCTGTCTCTATTTGCAACAGACCCATGACTATACAGTTGAAAATACCACATTTCACAAGTGAGGGCACGTGTCTGCCCAGACTAGAGCCTGCTTCCTGGAATGCTCCAAAAGACTTTGGACCCAACCATGGACCCAACAGACCAAAGTTAGTTTTTGTGCAGCAGTACACTGTTGGCCGGAGAATGCAGTCTGTGTGGGTTGCTCTCatgttatattttttattttgcatTTAGGCCTGGTAGATCCTCTCCTGAAACATTCCCCACACACAGAGGTCACACAGAAGGATGGGCATCACTTGAACCATCCCATccaggtattatattatattggtgtGGACAGAATTCAATCAAACCTGCATTGTGGAATTTATGCAATAGCTCTTTCCCCATGGTCAGTGGTAATAAAACACAGAAACAGGAAGATTAAGCTATTTTCTCCCCTTACACTGATCTAATAACTACACATTCTGTATGTATATATTACACATCATGTAAACAATGTGTAAGGACTGTTTTGGGGAGATAACCAGACCAGCCAACCTAGGTATGGTGACTTAAATCATGATACCATCTGATTATGTGGCATTATCAGGGTGCTGGAGCTGTCAACTGTTTGTTGTGAAGCCGACAATGTGAAGATTTAAAACACATCATGAATTATGCAAAAATTGTTGTACTTTGACTTGTGAAATTTCTTTATATGTAATTATAATGTTACATTTGTGATGGTATTATTGGGAATGATGTGTATAGCAGTAGACAGTGTATGTAACCCAATATGTACACTTAAGGAGCCTACCGGTACTCCTTAATGTCCAAGGATTTAACATATTATTTTCAGAGGTAGACTCGCTCTggcagccaaaacagccaaatactccatctaaacgtgaattgATTCTCAGTACAGCCctttactttcatatcacatcaaaataatttcagaaatgcaaaatatacacttactgtacactgttTAAACTGGCTTTATCACAGTTGCAGCTTACACATTTCTGGCAGCCTTCTTCCATTACACGCAGGTGTTCCGAGCAttctagatagctaattagccccccagtgtaata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561286.2 False 6562 mRNA 0.43 5 13753353 13764618
TU1390181 True 1208 lncRNA 0.40 1 13763405 13764612

Neighbor

gene id symbol gene type direction distance location
LOC110488858 LOC106604641 coding downstream 5182 13738427 ~ 13748171 (-)
LOC110488853 LOC106604605 coding downstream 37853 13683784 ~ 13715500 (-)
LOC110488852 LOC106604643 coding downstream 49289 13687627 ~ 13704064 (-)
LOC110487738 LOC106596785 coding downstream 56144 13683023 ~ 13697209 (-)
LOC118938697 NA coding downstream 92077 13645835 ~ 13661276 (-)
LOC110488862 exosc3 coding upstream 26635 13791253 ~ 13793746 (-)
LOC110488864 LOC106604798 coding upstream 29935 13794142 ~ 13796834 (-)
abca1b LOC106604636 coding upstream 37315 13801933 ~ 13840874 (-)
tbc1d2 LOC106604634 coding upstream 105457 13870075 ~ 13896532 (-)
LOC110489470 LOC106604797 coding upstream 147539 13912157 ~ 13913527 (-)
G1217351 NA non-coding downstream 70599 13682524 ~ 13682754 (-)
G1217350 NA non-coding downstream 71853 13681270 ~ 13681500 (-)
G1217349 NA non-coding downstream 72477 13680537 ~ 13680876 (-)
G1217339 NA non-coding downstream 85485 13667636 ~ 13667868 (-)
G1217480 NA non-coding upstream 12965 13777583 ~ 13780174 (-)
G1217478 NA non-coding upstream 22574 13787192 ~ 13790418 (-)
G1217501 NA non-coding upstream 63390 13828008 ~ 13829624 (-)
G1217507 NA non-coding upstream 76763 13841381 ~ 13841619 (-)
G1216443 NA other downstream 910600 12841496 ~ 12842753 (-)
LOC110488817 LOC105028880 other downstream 924701 12820904 ~ 12828721 (-)
LOC110488811 LOC106604684 other downstream 1184688 12563911 ~ 12568719 (-)
G1216013 NA other downstream 1274886 12478019 ~ 12478467 (-)
LOC110488886 LOC106604622 other upstream 792215 14542673 ~ 14642681 (-)
G1218808 NA other upstream 1229202 14993820 ~ 14994379 (-)
G1219208 NA other upstream 1553175 15317793 ~ 15318160 (-)
asb5a LOC101464329 other upstream 3633723 17395671 ~ 17399280 (-)
G1225043 LOC108238713 other upstream 6071260 19835878 ~ 19836319 (-)

Expression


Co-expression Network