XLOC_031099 (lman2lb)


Basic Information

Item Value
gene id XLOC_031099
gene name lman2lb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 26884676 ~ 26893310 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060415
TTTTGAAGTGAGCGAGGAAAAATGGCGACCATCGCGATGAAGTTGAACGGGACAATTTACACAACAATAATGGATTTACCGCACAGTCTGTCAAACAAAATTAAAGTGTCGGCGTTATTAGTTTTAATACTCGCTTTTGTAAGTAGTAGCAATGGAGAAAACACATATGAAGATAACTCTTATGAATTTCTCAAGCGGGAGTATTCGCTGAGTAAGCCGTACCAAGGACTGGGCTCCTCCAGCTCGTCACACTGGGAGTTTATGGGCAACACCATGGTCATGCCTGAACACATACGGCTGACACCAGACATGCAGAGCAGACAAGGAGCCGTGTGGAGTCGTATTcCCTGTTACCTGAGGGACTGGGAGCTTCAAGTTCAGTTTAAGATCCATGGAGAGGGCAAGAAGAACCTGAATGGGGATGGCCTTGCAATATGGCTGACCAAAGAGCGAATGCAAATAGGTCAGGTGTTTGGAAGCGCCAACATTTTTACTGGTTTGGGTATTTTTGTGGACACTTATCCAAACGATGATAAGCAGCACGAGAGAACGTTTCCATTCATCTCCGCAATGGTTGGGAATGGAAGTGTTGCGTATGATCATGACCGTGACGGACGAACTACTGATCTTGGTGGTTGTACTGCTCACGTTCGCAACGTTGAGCATGACACATTTGTCCTGATCAGATACATGAGGAGCAGACTAACAATTATGACTGATATTGAAGGGAAGCAGGAGTGGAAGGACTGTCTGGATATGCCTGGAGTAAGACTGCCACAGGGATACTACTTTGGTGTCTCATCCGCAACTGGAGATTTATCAGATAACCATGACCTGGTCTCTTTCAAGCTCTATGAGCTCACAGTGGAACGCAGTCCTGAAGAGGAAGAGGAGCAGCAGGAGATCACACTACCTAGTGTTGACTACCGAGTGGACCCTAATGTTCACGTGGAGGATGAAGGAAGGAGCATCATCACCACCTTCTTCATCTTCATCGTCTCTGTCGTTGCACTGGTCGTGGTGATCGTGGTCATTCTCTTCCTATATAGTCAATATAAAGACAGCCGCCGCAAGCGCTTCTATTGATCTACTGATTGAAGAGAGCAAAGACATGCCATGAGAGATCCAATGTGAGTTTGActggcttttttgttttgttgttttttgcaaaAAGAACCATTTCTGGTTCACTCCAACAGAAAGGAACTGAAGGCCAACACTGAACTAGAAGCCATAGCTGATCTCTCAGTATGAAAACAGACCACCTCAATCATCaatatcatctcaaaaacaaacTGTTGAAGAGTGTTTGAGAGACtgtgcgtcttttttttttttttttttgaaggtctCTTCAGATATTTGTGCGTTTTTCTGTAATTTTTGTACCAATTACACTGACCTTGGCCTTTCTCCCTGTGACAGCATTTACAGAGGCTAAAGAGTTCAACAAACTATGGTATTCTCAGGTTGTCAACTGTAACGCAACTGCAGAAGTCCCAGAAGCCCtggtgcttgtttttttttatgatcaaAAGAAGAAACTCGGTCACCAGACTTCAGTAAATCATCTTATCCACCACACTCGCTAAATAGTCAAAGATCATGTTTTAAGATTTGtaaaattaattgagatttaTTTCACCTTTATACAAGTAATGCTGGCCAGCCGTGCTCTTCTTAACCGACAGTAGCAACCGACAGTGTGAACGTGAATAAAATAGTTTCTCCAAATTTGTGTTTCGTAATAAATGATAGATACTTGATGTCTTTTGTTATATGTGGTCCTGTTTAATGTTATTCAACACTGCACTGAACTGCTCGGCCATATGTAGCTTGTCTAAAGTTACTTTGGTTTGTGAAACATGATTTAATTAACTATGATTTTTGTGTGAAACCTTTATTTTACGTGTCAATGGCCTTATTTGAATACTATGTTCAATTGTTTTGATGTGCTGGACAATATAACAACAGAAATGAACGAAAACGTGGTTTCTTGAGTTTACTTTTATCTTGATAGTTTTTCAATAATTGAAGATATCCAGTTGTTTTCCTTCCATGCTGCAGTTTTTCCTGTCACTTCTAGTTGCTGCTGTTTACAGTTATTCAAGGTTTGCTGATTGTCTGTATAATGGCAGAGACTGTAGCTCAGTGATTGAGGAAGCTGCTGTATAAAACTGTTGTGTCTTTTGTCGTCTTAGTTTTTTCCACCATGTTTAATGCTCAAACTAAATTAAAGAAGTTTTTCTTGT

Function

symbol description
lman2lb Predicted to enable mannose binding activity. Predicted to be involved in Golgi organization; endoplasmic reticulum organization; and endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including COPII-coated ER to Golgi transport vesicle; Golgi membrane; and endoplasmic reticulum-Golgi intermediate compartment. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human LMAN2L (lectin, mannose binding 2 like).

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0007029 endoplasmic reticulum organization biological_process
GO:0007030 Golgi organization biological_process
GO:0030134 COPII-coated ER to Golgi transport vesicle cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005793 endoplasmic reticulum-Golgi intermediate compartment cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005537 mannose binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-256 Predicted to enable mannose binding activity. Predicted to be involved in Golgi organization; endoplasmic reticulum organization; and endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including COPII-coated ER to Golgi transport vesicle; Golgi membrane; and endoplasmic reticulum-Golgi intermediate compartment. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human LMAN2L (lectin, mannose binding 2 like).

Ensembl:

ensembl_id ENSDARG00000088663

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060415 True 2252 mRNA 0.41 8 26884676 26893310

Neighbor

gene id symbol gene type direction distance location
XLOC_031098 zgc:64051 coding downstream 5355 26869580 ~ 26879321 (-)
XLOC_031097 si:ch211-102c2.4 coding downstream 49969 26824303 ~ 26834707 (-)
XLOC_031096 si:ch211-102c2.7 coding downstream 89238 26786969 ~ 26795438 (-)
XLOC_031095 rnf181 coding downstream 119488 26756021 ~ 26765188 (-)
XLOC_031094 arvcfb coding downstream 318241 26263128 ~ 26566435 (-)
XLOC_031100 htra4 coding upstream 36752 26930062 ~ 26950374 (-)
XLOC_031101 BX927282.1 coding upstream 145714 27039024 ~ 27047864 (-)
XLOC_031102 CR933001.1 coding upstream 200914 27094224 ~ 27094338 (-)
XLOC_031103 BX323062.1 coding upstream 521460 27414770 ~ 27434404 (-)
XLOC_031104 drd7 coding upstream 544171 27437481 ~ 27438812 (-)
XLOC_031092 NA non-coding downstream 652588 26228094 ~ 26232088 (-)
XLOC_031087 NA non-coding downstream 775043 26100322 ~ 26109633 (-)
XLOC_031085 NA non-coding downstream 813362 26061567 ~ 26071314 (-)
XLOC_031084 NA non-coding downstream 916852 25964182 ~ 25967824 (-)
XLOC_031081 NA non-coding downstream 1201986 25680616 ~ 25682690 (-)
XLOC_031111 NA non-coding upstream 1263628 28156938 ~ 28188693 (-)
XLOC_031112 NA non-coding upstream 1320281 28213591 ~ 28271267 (-)
XLOC_031113 NA non-coding upstream 1594693 28488003 ~ 28490988 (-)

Expression

Expression of XLOC_031099(lman2lb) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.

Expression of XLOC_031099(lman2lb) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_03848230_03850745 LMAN2LB coding CI01000339 null 3848197 ~ 3851487 (-)