nanos1 (nano1)


Basic Information

Item Value
gene id nanos1
gene name nano1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 15502250 ~ 15504805 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561351.2
TGTACAAGCGTTTATACACTAGAAGAACACTGGAGCAGTCCAGTTCACCAACCATCCTGGAAACGAACTCTGGCTGTAAACCTGGAGGATTACATTGGTGCTTTTGCATAGAAGGGAGAAAAATAATCATGGATTTTCTCAATCATAACTATTTGAGTGCGCGCAACCCATATGACTATACCTTTAATTTTTGGAACGACTATCTGGGTCTGTCGACGTTGGTCACGAAGAATAACAAGCACATGATGCCCCAAAGCCCAAACTCCATCACCGAGTCCCTGAAAGCAACCCTGGGTTTGGATGACTCTCCAGAATGTGCGTGCGTAATCTCGGGCAGTAGTGGAGGCGGACACCTGGACTGCTGTTGTCCATCCGCGAGCCCCCCGCCTACCTCCATCCTGGACTTGAAGGAGCGCTTTTCAATTCTGAGTCCATTCCAAAACCAAATCGGTGGCATCCCACTACAAGACCGGGATTTGGGCTTCGGGGGGAGCTTCGCAGGATTTGACCTGTTCGGAGTGGAGAGGAAGATGCGCAAACCAACGTCAAGGAATAAACAGGAGCCCAAAATCTGCGTCTTCTGCAGGAATAACGGTGCGCCGGAGGAGGTGTACGGCTCCCACGTTCTGAAGACACCGGACGGGAGGGTGGTGTGCCCCATTCTTCGGGCTTATACCTGCCCTCTTTGCAGTGCCAATGGTGACAATGCGCACACAATTAAGTACTGTCCACTCTCCAAAGATCAACCAACCCAGCGACCATtaaagggagggagggcagtGGGTGGTAAGCGAATGAAAATATTCTAGAGATAGATTTGTACACAAATAAAGAAACTAAATTGAATTGCACTGAACAATTTTCAGATGACTGTTTCCATTGCGGCTATAGCATATCCCAGTCCTAATGGCTAGGCTACATGACTTcataaacaaataaaacaatatatTGATTTTATGCTTTTTCCAAAATCTCTTATATTTTTATAGTTGCTTTATTCACATAGATGTTTTTATTCGTTATACATTGAATTGATTTTCTTCTTATAGTGTATAGCTCTTTGCGTGTTCATTTAAATTCACCTATATTCATAATCACAATGTGTGAATACATGCTGAATGTTTCGTGGGGTACATTGATTTATGAGGGCGTGAGAAGGTTGTGATTGTCATGTTACCAGTACTTTTTACTGTAAGCTTAGCTATTCTTTTCTCTTTTGAAAACCAAAGTTATGTTTGTCATTAAACAAGGGTAAGAATGTTCATGAATAAAACTATTTCCATTCGAGATGTCTGTAAAACAAGGTATGGCTCTTTTGAGGCCCATTCCTCGGTCTGCCACTCCACAACACAGTTTCAAACTTGCTCTGAAGTTGACATGTAATATCTGTAGcataaaaaaacaagacaatgaCATCTCTGTTATGGCCTGGTGTTTTCTGGGTAACTTCATACTCAATAATAGCCAAGCCAAATGACTCATCTCCCATGTCACACATCACCCAGACTTATGAATAATCATTACCCCAATAAGATATACCCTTGATGTTTACATTCCCAAGAGAGGGTAACACACTGGATATAATTGCTTGTAGGCCTTTCTTTTCAATGCAGTTTTTCTTTTATCAACAATTACCCCAAAATGTCCTCAACAGAGGACTGAACTGGGGAGGCAAGGAGTGCTCTGCGATGGTAGAGTCAGGAGGACAATTCACCTTGAGAAATAGTGGGATAGCGCAAATGAATGTTATTAAACAAGCCTTTTTAAAAACAATGTATTAGCCCCCTTTTGCATTATTTCCCTGAATAAATCCAAAAAGATGCAAAATTATTGTGAATGTAAGATGGAAAGATGGAAAGTTGTCACTTGTGAGACTGCACATTTCTGACAGTTATGTTAACCAAAGGATTATACCATTTTAATGAACTGAAATGAGGAAGAGAGATTTGCTGTATTGTATATAAAGTTGACTTACGTTTATTCAGTATTTTAGCATTTCAAGTGACTTCAGAGGGTACTACCTCAACAGGATTTTGTACTTACATGTAAAATGTCAACTGCAGTTTATTAATATAGTGCTGCCATTTATAATAAGGGTTTGAATAGTATTTTTGATCTTTGTATAACATAATTGTATTTTTCTTTTGCTGCATTCAAACATGACAAAAGTGTATTTCCAATAAGCTCTACTCATTCTTCACCAAAGCGTGATTGTCTGTATATAGTGTTATCCCTACTTTAACAGTTTACGTGTTCAATGTTACATTCTTGGGGTTGTTTGCAAGAGAATGGGATATATTGAAAACAGTTGACAATTTGCCACTTGTAACAGAGGTTTTTGATTAAATGAAATGAGAAAAAAGAAACACTTTGTTATTAATATTTTACCACAATTTCCCTATATGCCTTGTGTGCAGAATAATACTATATGAATGAATTAATCCCTGTATGCTGCCTGTGCAGAATAATACGATATGAATGAATTAGTCCCTGTATGCTGCCTGTGCAGAATAATACTATATGAATTAATTACATGAATAAATAGCTTATCAAATA

Function

NR:

description
nanos homolog 1-like

GO:

id name namespace
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K18741 NANOS1, NOS1; protein nanos 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561351.2 True 2556 mRNA 0.39 1 15502250 15504805

Neighbor

gene id symbol gene type direction distance location
lbx2 LOC106604581 coding downstream 129444 15370261 ~ 15372806 (-)
adad1 adad1 coding downstream 338415 15146305 ~ 15163835 (-)
bbs12 LOC106604585 coding downstream 436277 15063216 ~ 15065973 (-)
LOC100136280 LOC106604591 coding downstream 441051 15056048 ~ 15061199 (-)
LOC110488889 NA coding downstream 466284 15032346 ~ 15035966 (-)
LOC110488901 LOC106604584 coding upstream 54109 15557717 ~ 15562695 (-)
LOC110488902 LOC106604579 coding upstream 113098 15617903 ~ 15628633 (-)
LOC110488905 LOC106604573 coding upstream 278282 15783087 ~ 15804150 (-)
LOC110488908 LOC106604571 coding upstream 333800 15838605 ~ 15860342 (-)
LOC110488909 LOC106604570 coding upstream 360082 15864887 ~ 15888346 (-)
G1219483 NA non-coding downstream 1558 15500489 ~ 15500692 (-)
G1219427 NA non-coding downstream 42155 15459880 ~ 15460095 (-)
G1219417 NA non-coding downstream 47166 15454833 ~ 15455084 (-)
G1219415 NA non-coding downstream 48465 15453495 ~ 15453785 (-)
G1219414 NA non-coding downstream 49103 15452906 ~ 15453147 (-)
G1219494 NA non-coding upstream 5828 15510633 ~ 15510899 (-)
G1219499 NA non-coding upstream 10706 15515511 ~ 15515810 (-)
G1219506 NA non-coding upstream 16407 15521212 ~ 15521429 (-)
G1219559 NA non-coding upstream 48223 15553028 ~ 15553234 (-)
G1219560 NA non-coding upstream 48683 15553488 ~ 15553730 (-)
G1219208 NA other downstream 184090 15317793 ~ 15318160 (-)
G1218808 NA other downstream 507871 14993820 ~ 14994379 (-)
LOC110488886 LOC106604622 other downstream 944869 14542673 ~ 14642681 (-)
LOC110488853 LOC106604605 other downstream 1787373 13683784 ~ 13715500 (-)
G1216443 NA other downstream 2659497 12841496 ~ 12842753 (-)
asb5a LOC101464329 other upstream 1893536 17395671 ~ 17399280 (-)
G1225043 LOC108238713 other upstream 4331073 19835878 ~ 19836319 (-)
G1225499 NA other upstream 4628906 20133711 ~ 20134053 (-)
G1225505 upf3b other upstream 4816973 20321778 ~ 20325219 (-)
G1225647 LOC106604448 other upstream 4960925 20465730 ~ 20470523 (-)

Expression


Co-expression Network